Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	CP002094	670605	672212–671033	429–1608	46 [45]	[45] 46	LLNZ_03505–LLNZ_03520	LLNZ_03505,LLNZ_03510,LLNZ_03515,LLNZ_03520

TTGTTTTAAATTTTTGAAAAATAGGTTCTTTAGTTATCAAATCATATTTCTGCATCACGTTTTGTTTTTTCA‑TGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCATTATCT  >  CP002094/670506‑670642                                                                                                    |                                       ttGTTTTAAATTTTTGAAAAATAGGTTCTTTAGTTATCAAATCATATTTCTGCATCACGTTTTGTTTTTTCA‑TGTTTTTGTCCTTTGTCTAAATTATAc                                        >  1:1469631/1‑99 (MQ=255) tggTTTAAAATGTTTAAAAAATCGTTTC‑TTAGTTAATAAAAGATATTTCTTCCTCACGTTTTGTTTTTTGATTTTTTTTGTCC‑TTGCATAAATTTTACa                                       <  2:1111746/97‑1 (MQ=255)   gTTTTAAATTTTTGAAAAATAGGTTCTTTAGTTATCAAATCATATTTCTGCATCACGTTTTGTTTTTTCA‑TGTTTTTGTCCTTTGTCTAAATTATACaa                                      <  1:169785/99‑1 (MQ=255)    ttttAAATTTTTGAAAAATAGGTTCTTTAGTTATCAAATCATATTTCTGCATCACGTTTTGTTTTTTCA‑TGTTTTTGTCCTTTGTCTAAATTATACAAt                                     >  1:1125368/1‑99 (MQ=255)       tAAATTTTTGAAAAATAGGTTCTTTAGTTATCAAATCATATTTCTGCATCACGTTTTGTTTTTTCA‑TGTTTTTGTCCTTTGTCTAAATTATACAATAGt                                  <  1:975941/99‑1 (MQ=255)       tAAATTTTTGAAAAATAGGTTCTTTAGTTATCAAATCATATTTCTGCATCACGTTTTGTTTTTTCA‑TGTTTTTGTCCTTTGTCTAAATTATACAATAGt                                  <  2:1094189/99‑1 (MQ=255)       tAAATTTTTGAAAAATAGGTTCTTTAGTTATCAAATCATATTTCTGCATCACGTTTTGTTTTTTCA‑TGTTTTTGTCCTTTGTCTAAATTATACAATAGt                                  <  2:739200/99‑1 (MQ=255)        aaaTTTTTGAAAAATAGGTTCTTTAGTTATCAAATCATATTTCTGCATCACGTTTTGTTTTTTCA‑TGTTTTTGTCCTTTGTCTAAATTATACAATAGTg                                 <  1:1589401/99‑1 (MQ=255)        aaaTTTTTGAAAAATAGGTTCTTTAGTTATCAAATCATATTTCTGCATCACGTTTTGTTTTTTCA‑TGTTTTTGTCCTTTGTCTAAATTATACAATAGTg                                 >  1:1273488/1‑99 (MQ=255)         aaTTTTTGAAAAATAGGTTCTTTAGTTATCAAATCATATTTCTGCATCACGTTTTGTTTTTTCA‑TGTTTTTGTCCTTTGTCTAAATTATACAATAGTGa                                >  1:1087202/1‑99 (MQ=255)          aTTTTTGAAAAATAGGTTCTTTAGTTATCAAATCATATTTCTGCATCACGTTTTGTTTTTTCA‑TGTTTTTGTCCTTTGTCTAAATTATACAATAGTGAc                               <  1:1644599/99‑1 (MQ=255)            ttttGAAAAATAGGTTCTTTAGTTATCAAATCATCTTTCTGCATCACGTTTTGTTTTTTCA‑TGTTTTTGTCCTTTGTCTAAATTATACAATAGTGActc                             <  1:130231/99‑1 (MQ=255)            ttttGAAAAATAGGTTCTTTAGTTATCAAATCATATTTCTGCATCACGTTTTGTTTTTTCA‑TGTTTTTGTCCTTTGTCTAAATTATACAATAGTGActc                             <  2:1065894/99‑1 (MQ=255)            ttttGAAAAATAGGTTCTTTAGTTATCAAATCATATTTCTGCATCACGTTTTGGTTTTTCA‑TGTTTTTGTCCTTTGTCTAAATTATACAATAGTGActc                             <  1:202411/99‑1 (MQ=255)            ttttGAAAAATAGGTGCTTTAGTTAGCAAATCATATTTCTGCATCACGTTTTGTTTTTTCA‑TGTTTTTGTCCTTTGTCTAAATTATACAATAGTGActc                             <  1:707423/99‑1 (MQ=255)             tttGAAAAATAGGTTCTTTAGTTATCAAATCATATTTCTGCATCACGTTTTGTTTTTTCA‑TGTTTTTGTCCTTTGTCTAAATTATACAATAGTGActct                            >  2:1624195/1‑99 (MQ=255)                 aaaaaTAGGTTCTTTAGTTATCAAATCATATTTCTGCATCACGTTTTGTTTTTTCA‑TGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGa                        <  1:1338784/99‑1 (MQ=255)                  aaaaTAGGTTCTTTAGTTATCAAATCATATTTCTGCATCACGTTTTGTTTTTTCA‑TGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGAt                       >  2:525157/1‑99 (MQ=255)                  aaaaTAGGTTCTTTAGTTATCAAATCATATTTCTGCATCACGTTTTGTTTTTTCA‑TGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGAt                       <  2:180197/99‑1 (MQ=255)                  aaaaTAGGTTCTTTAGTTATCAAATCATATTTCTGAATCACGTTTTGTTTTTTCA‑TGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGAt                       <  1:1440132/99‑1 (MQ=255)                    aaTAGGTTCTTTAGTTATCAAATCATATTTCTGCATCACGTTTTGTTTTTTCA‑TGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGAttt                     >  1:486459/1‑99 (MQ=255)                    aaTAGGTTCTTTAGTTATCAAATCATATTTCTGCATCACGTTTTGTTTTTTCA‑TGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGAttt                     >  2:897890/1‑99 (MQ=255)                    aaTAGGTTCTTTAGTTATCAAATCATATTTCTGCATCACGTTTTGTTTTTTCA‑TGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGAtta                     >  2:628233/1‑98 (MQ=255)                     aTAGGTTCTTTAGTTATCAAATCATATTTCTGCATCACGTTTTGTTTTTTCA‑TGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTa                    >  2:730610/1‑99 (MQ=255)                      tAGGTTCTTTAGTTATCAAATCATATTTCTGCATCACGTTTTGTTTTTTCA‑TGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTaa                   >  1:934083/1‑99 (MQ=255)                       aGGTTCTTTAGTTATCAAATCATATTTCTGCATCACGTTTTGTTTTTTCA‑TGTTTTTGTCCTTTGTCTAAATTATACAATAGTGActct                            <  1:1106621/89‑1 (MQ=255)                       aGGTTCTTTAGTTATCAAATCATATTTCTGCATCACGTTTTGTTTTTTCA‑TGTTTTTGTCCTTTGTCTAAATTATACAATAGTGActct                            >  2:1106621/1‑89 (MQ=255)                         gTTCTTTAGTTATCATATCATATTTCTGCATCACGTTTTGTTTTTTCA‑TGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGa                >  2:448192/1‑99 (MQ=255)                         gTTCTTTAGTTATCAAATCATATTTCTGCATCACGTTTTGTTTTTTCA‑TGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGa                <  1:954149/99‑1 (MQ=255)                          ttCTTTAGTTATCAAATCATATTTCTGCATCACGTTTTGTTTTTTCA‑TGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGAt               >  1:588685/1‑99 (MQ=255)                            cTTTAGTTATCAAATCATATTTCTGCATCACGTTTTGTTTTTTCA‑TGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATaa             >  2:1001846/1‑99 (MQ=255)                            cTTTAGTTATCAAATCATATTTCTGCATCACGTTTTGTTTTTTCA‑TGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATaa             >  1:338958/1‑99 (MQ=255)                             tttAGTTATCAAATCATATTTCTGCATCACGTTTTGTTTTTTTA‑TGTTTTTTTTCTTTTTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAAc            >  2:1586825/1‑99 (MQ=21)                             tttAGTTATCAAATCATATTTCTGCATCACGTTTTGTTTTTTCA‑TGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAAc            >  2:323268/1‑99 (MQ=255)                              ttAGTTATCAAATCATATTTCTGCATCACGTTTTGTTTTTTCA‑TGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAAca           <  1:1540121/99‑1 (MQ=255)                               tAGTTATCAAATCATATTTCTGCATCACGTTTTGTTTTTTCA‑TGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAAcat          <  2:1076916/99‑1 (MQ=255)                                  ttATCAAATCATATTTCTGCATCACGTTTTGTTTTTTCA‑TGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAAcatcat       >  1:560296/1‑99 (MQ=255)                                  ttATCAAATCATATTTCTGCATCACGTTTTGTTTTTTCA‑TGTTTTTGCCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAAcatcat       <  1:783751/99‑1 (MQ=255)                                   tATCAAATCATATTTCTGCATCACGTTTTGTTTTTTCA‑TGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCAtt      <  2:1595563/99‑1 (MQ=255)                                   tATCAAATCATATTTCTGCATCACGTTTTGTTTTTTCA‑TGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCAtt      >  2:831568/1‑99 (MQ=255)                                    aTCAAATCATATTTCTGCATCACGTTTTGTTTTTTCA‑TGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCAttc     >  1:409497/1‑98 (MQ=255)                                    aTCAAATCATATTTCTGCATCACGTTTTGTTTTTTCA‑TGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCAttc     >  1:901693/1‑98 (MQ=255)                                    aTCAAATCATATTTCTGCATCACGTTTTGTTTTTTCA‑TGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCAttc     >  2:1064765/1‑98 (MQ=255)                                     tCAAATCATATTTCTGCATCACGTTTTGTTTTTTCA‑TGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCAttct    >  1:232319/1‑97 (MQ=255)                                       aaaTCATATTTCTGCATCACGTTTTGTTTTTTCA‑TGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCAttctga  >  2:583804/1‑95 (MQ=255)                                       aaaTCATATTTCTGCATCACGTTTTGTTTTTTCA‑TGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCAttctga  >  1:1318577/1‑95 (MQ=255)                                                                                                    |                                       TTGTTTTAAATTTTTGAAAAATAGGTTCTTTAGTTATCAAATCATATTTCTGCATCACGTTTTGTTTTTTCA‑TGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCATTATCT  >  CP002094/670506‑670642

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑