Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	CP002094	670605	672212–671033	429–1608	46 [45]	[45] 46	LLNZ_03505–LLNZ_03520	LLNZ_03505,LLNZ_03510,LLNZ_03515,LLNZ_03520

AAGGGTTTCTTTAAATTCTTTTGAGTAGCGTTTTTGCATGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCATTCCTTTGAATTTTTTCTGGATAAAGAATTCAAAAAATTAGAATGATTAAT  >  CP002094/672164‑672311                                                  |                                                                                                   aaGGGTTTCTTTAAATTCTTTTGAGTAGCGTTTTTGCATGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCAtt                                                   <  1:764726/99‑1 (MQ=31) aaGGGTTTCTTTAAATTCTTTTGAGTAGCGTTTTTGCATGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCAtt                                                   <  2:1061/99‑1 (MQ=31) aaGGGTTTCTTTAAATTCTTTTGAGTAGCGTTTTTGCATGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCAtt                                                   <  1:1614284/99‑1 (MQ=31) aaGGGTTTCTTTAAATTCTTTTGAGTAGCGTTTTTGCATGTTTTTGTCCTTTGTCTAAATTATACAATACTGACTCTAAGATTTAAGGATAACATCAtt                                                   >  1:1068161/1‑99 (MQ=14)  aGGGTTTCTTTAAATTCTTTTGAGTAGCGTTTTTGCATGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCATTc                                                  >  2:1176185/1‑99 (MQ=32)   gggTTTCTTTAAATTCTTTTGAGTAGCGTTTTTGCATGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCATTcc                                                 <  1:633831/99‑1 (MQ=33)    ggTTTCTTTAAATTCTTTTGAGTAGCGTTTTTGCATGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCATTCCt                                                <  1:1565551/99‑1 (MQ=34)    ggTTTCTTTAAATTCTTTTGAGTAGCGTTTTTGCATGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCATTCCt                                                <  2:808125/99‑1 (MQ=34)     gTTTCTTTAAATTCTTTTGAGTAGCGTTTTTGCATGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCATTCCtt                                               >  1:1295855/1‑99 (MQ=35)        tCTTTAAATTCTTTTGAGTAGCGTTTTTGCATGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCATTCCTTTGa                                            >  2:263339/1‑99 (MQ=38)        tCTTTAAATTCTTTTGAGTAGCGTTTTTGCATGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCATTCCTTTGa                                            <  1:762859/99‑1 (MQ=38)               aTTCTTTTGAGTAGCGTTTTTGCATGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCATTCCTTTGAAtttttt                                     <  2:683178/99‑1 (MQ=255)                  cTTTTGAGTAGCGTTTTTGCATGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCATTCCTTTGAATTTTTTCTg                                  >  1:452035/1‑99 (MQ=255)                   ttttGAGTAGCGTTTTTGCATGTTTTTGTCCTTTGTCTAAATTATACAATAGTTACTCTAAGATTTAAGGATAACATCATTCCTTTGAATTTTTTCTgg                                 <  2:1104369/99‑1 (MQ=255)                    tttGAGTAGCGTTTTTGCATGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCATTCCTTTGAATTTTTTCTGGa                                <  2:260604/99‑1 (MQ=255)                     ttGAGTAGCGTTTTTGCATGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCATTCCTTTGAATTTTTTCTGGAt                               <  1:448724/99‑1 (MQ=255)                        aGTAGCGTTTTTGCATGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCATTCCTTTGAATTTTTTCTGGATaaa                            <  1:147275/99‑1 (MQ=255)                        aGTAGCGTTTTTGCATGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCATTCCTTTGAATTTTTTCTGGATaaa                            <  2:1163741/99‑1 (MQ=255)                        aGTAGCGTTTTTGCATGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCATTCCTTTGAATTTTTTCTGGATaaa                            <  2:955047/99‑1 (MQ=255)                            gCGTTTTTGCATGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCATTCCTTTGAATTTTTTCTGGATAAAGAAt                        <  2:839389/99‑1 (MQ=255)                            gCGTTTTTGCATGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCATTCCTTTGAATTTTTTCTGGATAAAGAAt                        <  2:965741/99‑1 (MQ=255)                            gCGTTTTTGCATGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCATTCCTTTGAATTTTTTCTGGATAAAGAAt                        >  1:176387/1‑99 (MQ=255)                             cGTTTTTGCATGTTTTTGTCCTTTGTCTAAATTATACGATAGTGACTCTAAGATTTAAGGATAACATCATTCCTTTGAATTTTTTCTGGATAAAGAAtt                       <  1:279554/99‑1 (MQ=255)                             cGTTTTTGCATGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCATTCCTTTGAATTTTTTCTGGATAAAGAAtt                       <  2:695603/99‑1 (MQ=255)                             cGTTTTTGCATGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCATTCCTTTGAATTTTTTCTGGATAAAGAAtt                       <  2:1065086/99‑1 (MQ=255)                             cGTTTTTGCATGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCATTCCTTTGAATTTTTTCTGGATAAAGAAtt                       <  2:1341623/99‑1 (MQ=255)                              gTTTTTGCATGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCATTCCTTTGAATTTTTTCTGGATAAAGAATTc                      >  1:1596305/1‑99 (MQ=255)                              gTTTTTGCATGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCATTCCTTTGAATTTTTTCTGGATAAAGAATTc                      >  1:345043/1‑99 (MQ=255)                               tttttGCATGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCATTCCTTTGAATTTTTTCTGGATAAAGAATTCa                     >  1:15957/1‑99 (MQ=255)                               tttttGCATGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCATTCCTTTGAATTTTTTCTGGATAAAGAATTCa                     >  1:24840/1‑99 (MQ=255)                                 tttGCATGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCATTCCTTTGAATTTTTTCTGGATAAAGAATTCaaa                   <  1:1440129/99‑1 (MQ=255)                                    gCATGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCATTCCTTTGAATTTTTTCTGGATAAAGAATTCaaaaaa                >  2:384559/1‑99 (MQ=255)                                     cATGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCATTCCTTTGAATTTTTTCTGGATAAAGAATTCAAAAAAt               <  1:1176185/99‑1 (MQ=255)                                       tGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCATTCCTTTGAATTTTTTCTGGATAAAGAATTCAAAAAATTa             <  2:92892/99‑1 (MQ=255)                                          ttttGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCATTCCTTTGAATTTTTTCTGGATAAAGAATTCAAAAAATTAGaa          <  2:463420/99‑1 (MQ=255)                                          ttttGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCATTCCTTTGAATTTTTTCTGGATAAAGAATTCAAAAAATTAGaa          <  1:701785/99‑1 (MQ=255)                                          tttaGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCATTCCTTTGAATTTTTTCTGGATAAAGAATTCAAAAAATTAGaa          <  2:1460721/99‑1 (MQ=255)                                            ttGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCATTCCTTTGAATTTTTTCTGGATAAAGAATTCAAAAAATTAGAATg        >  2:647118/1‑99 (MQ=255)                                             tGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCATTCCTTTGAATTTTTTCTGGATAAAGAATTCAAAAAATTAGAATGa       <  1:908929/99‑1 (MQ=255)                                             tGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCATTCCTTTGAATTTTTTCTGGATAAAGAATTCAAAAAATTAGAATGa       >  1:422413/1‑99 (MQ=255)                                               tCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCATTCCTTTGAATTTTTTCTGGATAAAGAATTCAAAAAATTAGAATGAtt     <  1:37382/99‑1 (MQ=255)                                               tCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCATTCCTTTGAATTTTTTCTGGATAAAGAATTCAAAAAATTACAATGAtt     >  1:181181/1‑99 (MQ=255)                                               tCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGAATAACATCATTCCTTTGAATTTTTTCTGGATAAAGAATTCAAAAAATTAGAATGAtt     >  1:606930/1‑99 (MQ=255)                                                ccTTTGTCTAAATTATACAATAGTGACTCTAAGACTTAAGGATAACATCATTCCTTTGAATTTTTTCTGGATAAAGAATTCAAAAAATTAGAATGATta    <  2:376003/99‑1 (MQ=255)                                                 cTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCATTCCTTTGAATTTTTTCTGGATAAAGAATTCAAAAAATTAGAATGATtaa   <  1:1414882/99‑1 (MQ=255)                                                  tttGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCATTCCTTTGAATTTTTTCTGGATAAAGAATTCAAAAAATTAGAATGATtaat  <  2:606915/99‑1 (MQ=255)                                                  |                                                                                                   AAGGGTTTCTTTAAATTCTTTTGAGTAGCGTTTTTGCATGTTTTTGTCCTTTGTCTAAATTATACAATAGTGACTCTAAGATTTAAGGATAACATCATTCCTTTGAATTTTTTCTGGATAAAGAATTCAAAAAATTAGAATGATTAAT  >  CP002094/672164‑672311

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑