| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_017635 | = 254282 | 2 (0.050) | 46 (1.160) | 34/96 | 0.1 | 95.9% | coding (404/1281 nt) | tagH | type VI secretion system‑associated FHA domain protein TagH |
| ? | NC_017635 | = 986727 | NA (NA) | coding (12/189 nt) | ECW_RS28140 | hypothetical protein | |||||
TGAGTCATTCCCGGATAGTGTGGCGTACCCTCCGTTGATAGCAGGGTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_017635/254234‑254282‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tGTAGTGGCACACTAAATTTGGCCACCTGATGAAAGGTGATATTCTCACC < NC_017635/986727‑986679 TGAGTCATTCCCGGATAGTGTGGCGTACCCTCCGTTGATAGCAGGGTATG > 1:1275549/1‑50TGAGTCATTCCCGGATAGTGTGGCGTACCCTCCGTTGATAGCAGGGTATG > 1:1887825/1‑50TGAGTCATTCCCGGATAGTGTGGCGTACCCTCCGTTGATAGCAGGGTATG > 2:877310/1‑50 GAGTCATTCCCGGATAGTGTGGCGTGCCCTCCGTTGATAGCAGGGTATG > 2:630135/1‑49 GAGTCATTCCCGGATAGTGTGGCGTACCCTCCGTTGATAGCAGGGTATG > 1:952656/1‑49 GAGTCATTCCCGGATAGTGTGGCGTACCCTCCGTTGATAGCAGGGTATG > 2:1295464/1‑49 AGTCATTCCCGGATAGTGTGGCGTACCCTCCGTTGATAGCAGGGTATGTA < 2:608345/50‑1 AGTCATTCCCGGATAGTGTGGCGTACCCTCCGTTGATAGCAGGGTATGTA < 1:1145350/50‑1 AGTCATTCCCGGATAGTGTGGCGTACCCTCCGTTGATAGCAGGGTATG > 2:832281/1‑48 CATTCCCGGATAGTGTGGCGTACCCTCCGTTGATAGCAGGGTATGTAGTG > 1:1659067/1‑50 CATTCCCGGATAGTGTGGCGTACCCTCCGTTGATAGCAGGGTATGTAGTG > 1:1299651/1‑50 ATTCCCGGATAGTGTGGCGTACCCTCCGTTGATAGCAGGGTATGTAGTGG > 1:622189/1‑50 TTCCCGGATAGTGTGGCGTACCCTCCGTTGATAGCAGGGTATGTAGTGGC < 2:86710/50‑1 CCGGATAGTGTGGCGTACCCTCCGTTGATAGCAGGGTATGTAGTGGCACA < 2:873808/50‑1 CGGATAGTGTGGCGTACCCTCCGTTGATAGCAGGGTATGTAGTGGCACAC > 1:614751/1‑50 GGATAGTGTGGCGTACCCTCCGTTGATAGCAGGGTATGTAGTGGCACAC > 1:26747/1‑49 ATAGTGTGGCGTACCCTCCGTTGATAGCAGGGTATGTAGTGGCACACTA > 2:612038/1‑49 AGTGTGGCGTACCCTCCGTTGATAGCAGGGTATGTAGTGGCACACTAAAT > 2:1372000/1‑50 ttTGGCGTACCCTCCGTTGATAGCAGGGTATGTAGTGGCACACTAAATTT < 2:810838/48‑1 TGTGGCGTACCCTCCGTTGATAGCAGGGTATGTAGTGGCACACTAAATTT < 1:1226085/50‑1 TGGCGTACCCTCCGTTGATAGCAGGGTATGTAGTGGCACACTAAATTTGG > 2:1513266/1‑50 TACCCTCCGTTGATAGCAGGGTATGTAGTGGCACACTAAATTTGGCCACC < 1:439489/50‑1 TACCCTCCGTTGATAGCAGGGTATGTAGTGGCACACTAAATTTGGCCACC > 1:1483167/1‑50 CCCTCCGTTGATAGCAGGGTATGTAGTGGCACACTAAATTTGGCCACCT < 2:1489122/49‑1 CCTCCGTTGATAGCAGGGTATGTAGTGGCACACTAAATTTGGCCACCTGA > 2:1452865/1‑50 CGTTGATAGCAGGGTATGTAGTGGCACACTAAATTTGGCCACCTGATGAA < 1:893683/50‑1 CGTTGATAGCAGGGTATGTAGTGGCACACTAAATTTGGCCACCTGATGA < 2:834686/49‑1 CGTTGATAGCAGGGTATGTAGTGGCACACTAAATTTGGCCACCTGATG < 1:1545854/48‑1 GTTGATAGCAGGGTATGTAGTGGCACACTAAATTTGGCCACCTGATGA > 2:1540330/1‑48 GTTGATAGCAGGGTATGTAGTGGCACACTAAATTTGGCCACCTGATGA > 2:1592817/1‑48 TTGATAGCAGGGTATGTAGTGGCACACTAAATTTGGCCACCTGATGAAAG < 1:1424512/50‑1 TGATAGCAGGGTATGTAGTGGCACACTAAATTTGGCCACCTGATGAAAGG > 1:908174/1‑50 GATAGCAGGGTATGTAGTGGCACACTAAATTTGGCCACCTGATGAAAGGT > 2:1336379/1‑50 GATAGCAGGGTATGTAGTGGCACACTAAATTTGGCCACCTGATGAAAGGT > 1:1432537/1‑50 TAGCAGGGTATGTAGTGGCACACTAAATTTGGCCACCTGATGAAAGGTGA < 1:874586/50‑1 CAGGGTATGTAGTGGCACACTAAATTTGGCCACCTGATGAAAGGTGATAT < 2:94757/50‑1 CAGGGTATGTAGTGGCACACTAAATTTGGCCACCTGATGAAAGGTGATAT > 1:1303022/1‑50 AGGGTATGTAGTGGCACACTAAATTTGGCCACCTGATGAAAGGTGATATT < 2:212714/50‑1 AGGGTATGTAGTGGCACACTAAATTTGGCCACCTGATGAAAGGTGATATT > 2:1226504/1‑50 AGGGTATGTAGTGGCACACTAAATTTGGCCACCTGATGAAAGGTGATATT > 2:1218164/1‑50 GGTATGTAGTGGCACACTAAATTTGGCCACCTGATGAAAGGTGATATTCT > 2:358781/1‑50 GGTATGTAGTGGCACACTAAATTTGGCCACCTGATGAAAGGTGATATTCT > 1:800707/1‑50 GTATGTAGTGGCACACTAAATTTGGCCACCTGATGAAAGGTGATATTCT > 2:381828/1‑49 TATGTAGTGGCACACTAAATTTGGCCACCTGATGAAAGGTGATATTCTCA > 2:872183/1‑50 TATGTAGTGGCACACTAAATTTGGCCACCTGATGAAAGGTGATATTCTCA > 1:1351812/1‑50 ATGTAGTGGCACACTAAATTTGGCCACCTGATGAAAGGTGATATTCTCAC > 1:92900/1‑50 TGTAGTGGCACACTAAATTTGGCCACCTGATGAAAGGTGATATTCTCACC < 1:677040/50‑1 TGTAGTGGCACACTAAATTTGGCCACCTGATGAAAGGTGATATTCTCAC > 2:786505/1‑49 TGTAGTGGCACACTAAATTTGGCCACCTGATGAAAGGTGATATTCTCAC > 1:1350601/1‑49 TGAGTCATTCCCGGATAGTGTGGCGTACCCTCCGTTGATAGCAGGGTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_017635/254234‑254282‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tGTAGTGGCACACTAAATTTGGCCACCTGATGAAAGGTGATATTCTCACC < NC_017635/986727‑986679 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |