| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_017635 | = 254282 | 2 (0.050) | 46 (1.160) | 34/96 | 0.1 | 95.9% | coding (404/1281 nt) | tagH | type VI secretion system‑associated FHA domain protein TagH |
| ? | NC_017635 | = 986727 | NA (NA) | coding (12/189 nt) | ECW_RS28140 | hypothetical protein | |||||
GTGAGAATATCACCTTTCATCAGGTGGCCAAATTTAGTGTGCCACTACACTTTGACTGAAGTAATCCCCGGTCTTCATGACGTGACCGGGGCTATT > NC_017635/986680‑986775 | gtgAGAATATCACCTTTCATCAGGTGGCCAAATTTAGTGTGCCACTacac > 2:1372631/1‑50 (MQ=32)gtgAGAATATCACCTTTCATCAGGTGGCCAAATTTAGTGTGCCACTacac < 2:1715570/50‑1 (MQ=32)gtgAGAATATCACCTTTCATCAGGTGGCCAAATTTAGTGTGCCACTacac < 2:1181778/50‑1 (MQ=32)gtgAGAATATCACCTTTCATCAGGTGGCCAAATTTAGTGTGCCACTacac > 1:1162806/1‑50 (MQ=32) agaATATCACCTTTCATCAGGTGGCCAAATTTAGTGTGCCACTACACttt > 2:1334855/1‑50 (MQ=40) aaTATCACCTTTCATCAGGTGGCCAAATTTAGTGTGCCACTACACTTTGa > 1:1278208/1‑50 (MQ=255) tCACCTTTCATCAGGTGGCCAAATTTAGTGTGCCACTACACTTTGACTg > 1:1137130/1‑49 (MQ=255) tCACCTTTCATCAGGTGGCCAAATTTAGTGTGCCACTACACTTTGACTg > 1:1399887/1‑49 (MQ=255) tCACCTTTCATCAGGTGGCCAAATTTAGTGTGCCACTACACTTTGACTg < 1:398035/49‑1 (MQ=255) cACCTTTCATCAGGTGGCCAAATTTAGTGTGCCACTACACTTTGACTg > 2:1942344/1‑48 (MQ=255) aCCTTTCATCAGGTGGCCAAATTTAGTGTGCCACTACACTTTGACTGAAg < 2:425393/50‑1 (MQ=255) ccTTTCATCAGGTGGCCAAATTTAGTGTGCCACTACACTTTGACTGAAGt < 1:1132620/50‑1 (MQ=255) cTTTCATCAGGTGGCCAAATTTAGTGTGCCACTACACTTTGACTGAAGt > 2:53736/1‑49 (MQ=255) tcatcaGGTGGCCAAATTTAGTGTGCCACTACACTTTGACTGAAGTAATc > 2:432371/1‑50 (MQ=255) tcatcaGGTGGCCAAATTTAGTGTGCCACTACACTTTGACTGAAGTAATc > 1:79179/1‑50 (MQ=255) atcaGGTGGCCAAATTTAGTGTGCCACTACACTTTGACTGAAGTAATccc > 1:1616907/1‑50 (MQ=255) atcaGGTGGCCAAATTTAGTGTGCCACTACACTTTGACTGAAGTAATccc < 1:416071/50‑1 (MQ=255) atcaGGTGGCCAAATTTAGTGTGCCACTACACTTTGACTGAAGTAATccc > 2:2049486/1‑50 (MQ=255) atcaGGTGGCCAAATTTAGTGTGCCACTACACTTTGACTGAAGTAATcc < 1:1108282/49‑1 (MQ=255) atcaGGTGGCCAAATTTAGTGTGCCACTACACTTTGACTGAAGTAATcc < 1:918533/49‑1 (MQ=255) atcaGGTGGCCAAATTTAGTGTGCCACTACACTTTGACTGAAGTAATcc < 1:852221/49‑1 (MQ=255) tcaGGTGGCCAAATTTAGTGTGCCACTACACTTTGACTGAAGTAATcccc < 2:2065068/50‑1 (MQ=255) tcaGGTGGCCAAATTTAGTGTGCCACTACACTTTGACTGAAGTAATcccc < 1:285098/50‑1 (MQ=255) tcaGGTGGCCAAATTTAGTGTGCCACTACACTTTGACTGAAGTAATcccc < 1:1900789/50‑1 (MQ=255) aGGTGGCCAAATTTAGTGTGCCACTACACTTTGACTGAAGTAATCCCCg < 1:1365002/49‑1 (MQ=255) tGGCCAAATTTAGTGTGCCACTACACTTTGACTGAAGTAATCCCCGGTCt > 2:1641023/1‑50 (MQ=255) gCCAAATTTAGTGTGCCACTACACTTTGACTGAAGTAATCCCCGGTCtt > 1:847415/1‑49 (MQ=255) gCCAAATTTAGTGTGCCACTACACTTTGACTGAAGTAATCCCCGGTCtt > 1:1003856/1‑49 (MQ=255) cAAATTTAGTGTGCCACTACACTTTGACTGAAGTAATCCCCGGTCTTCAt < 1:966872/50‑1 (MQ=255) aaaTTTAGTGTGCCACTACACTTTGACTGAAGTAATCCCCGGTCTTCAt > 2:816601/1‑49 (MQ=255) aTTTAGTGTGCCACTACACTTTTACTGAAGTAATCCCCGGTCTTCATGAc > 1:824903/1‑50 (MQ=255) ttgtgtGCCACTACACTTTGACTGAAGTAATCCCCGGTCTTCATGACGt < 2:930064/47‑1 (MQ=255) aGTGTGCCACTACACTTTGACTGAAGTAATCCCCGGTCTTCATGACGTg < 2:1906080/49‑1 (MQ=255) aGTGTGCCACTACACTTTGACTGAAGTAATCCCCGGTCTTCATGACGTg < 1:2051606/49‑1 (MQ=255) gtgtGCCACTACACTTTGACTGAAGTAATCCCCGGTCTTCATGACGTGAc < 2:1115362/50‑1 (MQ=255) tgtgCCACTACACTTTGACTGAAGTAATCCCCGGTCTTCATGACGTGAcc < 2:667256/50‑1 (MQ=255) gtgCCACTACACTTTGACTGAAGTAATCCCCTGTCTTCATGACGTGACCg < 2:1052438/50‑1 (MQ=255) tgCCACTACACTTTGACTGAAGTAATCCCCGGTCTTCATGACGTGACCg < 2:1715270/49‑1 (MQ=255) tgCCACTACACTTTGACTGAAGTAATCCCCGGTCTTCATGACGTGACCg < 2:2010099/49‑1 (MQ=255) tgCCACTACACTTTGACTGAAGTAATCCCCGGTCTTCATGACGTGACCg < 1:1983153/49‑1 (MQ=255) tgCCACTACACTTTGACTGAAGTAATCCCCGGTCTTCATGACGTGACCg < 1:125703/49‑1 (MQ=255) tgCCACTACACTTTGACTGAAGTAATCCCCGGTCTTCATGACGTGACCg < 2:723006/49‑1 (MQ=255) cACTACACTTTGACTGAAGTAATCCCCGGTCTTCATGACGTGACCGGGGc < 2:9489/50‑1 (MQ=255) aCTACACTTTGACTGAAGTAATCCCCGGTCTTCATGACGTGACCGGGGc > 2:681710/1‑49 (MQ=255) acacTTTGACTGAAGTAATCCCCGGTCTTCATGACGTGACCGGGGCTAtt > 2:747722/1‑50 (MQ=255) acacTTTGACTGAAGTAATCCCCGGTCTTCATGACGTGACCGGGGCTAtt > 2:627716/1‑50 (MQ=255) acacTTTGACTGAAGTAATCCCCGGTCTTCATGACGTGACCGGGGCTAtt > 2:1721299/1‑50 (MQ=255) cacTTTGACTGAAGTAATCCCCGGTCTTCATGACGTGACCGGGGCTAtt < 2:1135047/49‑1 (MQ=255) | GTGAGAATATCACCTTTCATCAGGTGGCCAAATTTAGTGTGCCACTACACTTTGACTGAAGTAATCCCCGGTCTTCATGACGTGACCGGGGCTATT > NC_017635/986680‑986775 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |