| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_017635 | = 2314113 | 13 (0.320) | 16 (0.580) | 16/68 | 0.4 | 52.5% | coding (52/414 nt) | ECW_RS28245 | hypothetical protein |
| ? | NC_017635 | = 2315924 | 20 (0.720) | pseudogene (17/459 nt) | ECW_RS28250 | phage tail protein | |||||
GCCAGTTGCCCGTTATCTCTGCATTTTCATAAACGTTGGTTTGGGAGAAGCGGCAAAACGGGATGTGGGTAACGGGCAAAACCAAATTCCTGATATGTC > NC_017635/2314064‑2314162 | gCCAGTTGCCCGTTATCTCTGCATTTTCATAAACGTTGGTTTGGGAGAAG > 2:1360973‑M1/1‑50 (MQ=255) ccAGTTGCCCGTTATCTCTGCATTTTCATAAACGTTGGTTTGGGAGAAGc < 1:1034041/50‑1 (MQ=255) cAGTTGCCCGTTATCTCTGCATTTTCATAAACGTTGGTTTGGGAGAAGgt < 2:14547‑M1/50‑3 (MQ=255) aGTTGCCCGTTATCTCTGCATTTTCATAAACGTTGGTTTGGGAGAAGgtg < 1:444720‑M1/50‑4 (MQ=255) ggaaaagatgtggctggtcttctcgcataccTTGGTTTGGGGGAAGCgg < 2:1794654‑M1/18‑1 (MQ=255) ttGCCCGTTATCTCTGCATTTTCATAAACGTTGGTTTGGGAGAAGgtgct < 2:1662760‑M1/50‑6 (MQ=255) aaaagatgtggctggtcttctcgcataccTTGGTTTGGGAGAAGCGGCaa > 2:448213‑M1/30‑50 (MQ=255) gCCCGTTATCTCTGCATTTTCATAAACGTTGGTTTGGGAGAAGCGGCaa < 1:1596228/49‑1 (MQ=255) cccGTTATCTCTGCATTTTCATAAACGTTGGTTTGGGAGAAGgtgctcca < 1:975435‑M1/50‑9 (MQ=255) cccGTTATCTCTGCATTTTCATAAACGTTGGTTTGGGAGAAGgtgctcc < 2:1515576‑M1/49‑8 (MQ=255) cccGTTATCTCTGCATTTTCATAAACGTTGGTTTGGGAGAAGCGGCaaa < 1:1892134/49‑1 (MQ=255) aagatgtggctggtcttctcgcataccTTGGTTTGGGAGAAGCGGCaaaa > 2:1352630‑M1/28‑50 (MQ=255) aagatgtggctggtcttctcgcataccTTGGTTTGGGAGAAGCGGCaaaa > 1:2032255‑M1/28‑50 (MQ=255) aagatgtggctggtcttctcgcataccTTGGTTTGGGAGAAGCGGCaaaa < 1:1030646‑M1/23‑1 (MQ=255) ccGTTATCTCTGCATTTTCATAAACGTTGGTTTGGGAGAAGgtgctccag > 2:488095‑M1/1‑41 (MQ=255) cGTTATCTCTGCATTTTCATAAACGTTGGTTTGGGAGAAGCGGCAAAACg < 1:437030/50‑1 (MQ=255) gTTATCTCTGCATTTTCATAAACGTTGGTTTGGGAGAAGgtgctccagct < 1:564272‑M1/50‑12 (MQ=255) gTTATCTCTGCATTTTCATAAACGTTGGTTTGGGAGAAGCGGCAAAACgg > 1:1577519/1‑50 (MQ=255) gTTATCTCTGCATTTTCATAAACGTTGGCTTGGGAGAAGCGGCAAAACgg > 1:1866508/1‑50 (MQ=255) ttATCTCTGCATTTTCATAAACGTTGGTTTGGGAGAAGCGGCAAAACggg < 1:1043554/50‑1 (MQ=255) aTCTCTGCATTTTCATAAACGTTGGTTTGGGAGAAGgtgctccagctatt > 2:1049632‑M1/1‑36 (MQ=255) ggctggtcttctcgcataccTTGGTTTGGGAGAAGCGGCAAAACGGGAtg < 1:89740‑M1/30‑1 (MQ=255) gctggtcttctcgcataccTTGGTTTGGGAGAAGCGGCAAAACGGGAtg > 2:704051‑M1/20‑49 (MQ=255) ctctGCATTTTCATAAACGTTGGTTTGGGAGAAGgtgctccagctattgg > 1:1912886‑M1/1‑34 (MQ=255) ctggtcttctcgcataccTTGGTTTGGGAGAAGCGGCAAAACGGGAtgtg > 1:633821‑M1/19‑50 (MQ=255) ctggtcttctcgcataccTTGGTTTGGGAGAAGCGGCAAAACGGGAtgtg > 1:1060392‑M1/19‑50 (MQ=255) tggtcttctcgcataccTTGGTTTGGGAGAAGCGGCAAAACGGGATGTgg < 2:1394518‑M1/33‑1 (MQ=255) tggtcttctcgcataccTTGGTTTGGGAGAAGCGGCAAAACGGGATGTgg < 2:1401892‑M1/33‑1 (MQ=255) tggtcttctcgcataccTTGGTTTGGGAGAAGCGGCAAAACGGGATGTgg < 1:1935009‑M1/33‑1 (MQ=255) tGCATTTTCATAAACGTTGGTTTGGGAGAAGgtgctccagctattg < 1:492555‑M1/46‑16 (MQ=255) tGCATTTTCATAAACGTTGGTTTGGGAGAAGCGGCAAAACGGGAtgtg < 1:2053418/48‑1 (MQ=255) tGCATTTTCATAAACGTTGGTTTGGGAGAAGCGGCAAAACGGGAtg < 2:1807012/46‑1 (MQ=255) gtcttctcgcataccTTGGTTTGGGAGAAGCGGCAAAACGGGATGTggg > 2:67557‑M1/16‑49 (MQ=255) tcttctcgcataccTTGGTTTGGGAGAAGCGGCAAAACGGGATGTGGGTa > 2:1208621‑M1/15‑50 (MQ=255) cATTTTCATAAACGTTGGTTTGGGAGAAGgtgctccagctattggcgttc > 1:754851‑M1/1‑29 (MQ=255) cATTTTCATAAACGTTGGTTTGGGAGAAGCGGCAAAACGGGATGTGGGt < 2:1522702/49‑1 (MQ=255) cATTTTCATAAACGTTGGTTTGGGAGAAGCGGCAAAACGGGATGTGGGTa < 1:1330996/50‑1 (MQ=255) cttctcgcataccTTGGTTTGGGAGAAGCGGCAAAACGGGATGTGGGTaa < 2:667953‑M1/37‑1 (MQ=255) aTTTTCATAAACGTTGGTTTGGGAGAAGCGGCAAAACGGGATGTGGGTaa < 2:1633860/50‑1 (MQ=255) ttttCATAAACGTTGGTTTGGGAGAAGCGGCAAAACGGGATGTGGGTAAc > 2:1188244/1‑50 (MQ=255) ctcgcataccTTGGTTTGGGAGAAGCGGCAAAACGGGATGTGGGTAAc > 1:745072‑M1/11‑48 (MQ=255) ctcgcataccTTGGTTTGGGAGAAGCGGCAAAACGGGATGTGGGTAACg > 1:798802‑M1/11‑49 (MQ=255) cATAAACGTTGGTTTGGGAGAAGgtgctccagctattggcgttccgttct > 2:1748525‑M1/1‑23 (MQ=255) tAAACGTTGGTTTGGGAGAAGgtgctccagctattggcgttccgttcttc < 2:1465375‑M1/50‑30 (MQ=255) aaCGTTGGTTTGGGAGAAGgtgctccagctattggcgttccgttcttct < 2:711750‑M1/49‑31 (MQ=255) cGTTGGTTTGGGAGAAGgtgctccagctattggcgttccgttcttctggc < 1:774519‑M1/50‑34 (MQ=255) gTTGGTTTGGGAGAAGgtgctccagctattggcgttccgttcttctggcc < 1:841211‑M1/50‑35 (MQ=255) TGGTTTGGGAGAAGCGGCAAAACGGGATGTGGGTAACGGGCAAAACCaaa < 2:415629‑M1/50‑1 (MQ=255) TGGTTTGGGAGAAGCGGCAAAACGGGATGTGGGTAACGGGCAAAACCaaa < 1:3752‑M1/50‑1 (MQ=255) ggTTTGGGAGAAGgtgctccagctattggcgttccgttcttctggccctc > 1:229002‑M1/1‑13 (MQ=255) GGTTTGGGAGAAGCGGCAAAACGGGATGTGGGTAACGGGCAAAACCaaa > 1:956620‑M1/1‑49 (MQ=255) gTTTGGGAGAAGgtgctccagctattggcgttccgttcttctggccctcc < 2:1967417‑M1/50‑39 (MQ=255) gTTTGGGAGAAGgtgctccagctattggcgttccgttcttctggccctcc > 2:1426321‑M1/1‑12 (MQ=255) gTTTGGGAGAAGgtgctccagctactggcgttccgttcttctggccctcc > 1:1787566‑M1/1‑12 (MQ=255) GTTTGGGAGAAGCGGCAAAACGGGATGTGGGTAACGGGCAAAACCAAAtt < 1:746631‑M1/50‑1 (MQ=255) tttGGGAGAAGgtgctccagctattggcgttccgttcttctggccctccg < 1:1643018‑M1/50‑40 (MQ=255) TTTGGGAGAAGCGGCAAAACGGGATGTGGGTAACGGGCAAAACCAAATTc < 2:1939381‑M1/50‑1 (MQ=255) ttGGGAGAAGgtgctccagctattggcgttccgttcttctggccctccgc > 2:1808168‑M1/1‑10 (MQ=255) tGGGAGAAGgtgctccagctattggcgttccgttcttctggccctccgcg > 2:1640062‑M1/1‑9 (MQ=255) tGGGAGAAGgtgctccagctattggcgttccgttcttctggccctccgc < 1:493397‑M1/49‑41 (MQ=255) gggAGAAGgtgctccagctattggcgttccgttcttctggccctccgcgg > 2:1684963‑M1/1‑8 (MQ=255) gggAGAAGgtgctccagctattggcgttccgttcttctggccctccgcg < 2:2060066‑M1/49‑42 (MQ=255) GGGAGAAGCGGCAAAACGGGATGTGGGTAACGGGCAAAACCAAATTCCt < 1:409528‑M1/49‑1 (MQ=255) GGGAGAAGCGGCAAAACGGGATGTGGGTAACGGGCAAAACCAAATTCCt > 2:1593686‑M1/1‑49 (MQ=255) GGGAGAAGCGGCAAAACGGGATGTGGGTAACGGGCAAAACCAAATTCCt > 2:1845241‑M1/1‑49 (MQ=255) GGGAGAAGCGGCAAAACGGGATGTGGGTAACGGGCAAAACCAAATTCCt < 1:1558268‑M1/49‑1 (MQ=255) GGGAGAAGCGGCAAAACGGGATGTGGGTAACGGGCAAAACCAAATTCCt < 2:2042239‑M1/49‑1 (MQ=255) ggAGAAGgtgctccagctattggcgttccgttcttctggccctccgcgg > 2:1397658‑M1/1‑7 (MQ=255) GGAGAAGCGGCAAAACGGGATGTGGGTAACGGGCAAAACCAAATTCCTg > 1:681638‑M1/1‑49 (MQ=255) gagaAGgtgctccagctattggcgttccgttcttctggccctccgcggc > 2:1481161‑M1/1‑6 (MQ=255) AGAAGCGGCAAAACGGGATGTGGGTAACGGGCAAAACCAAATTCCTGata < 2:1346903‑M1/50‑1 (MQ=255) GAAGCGGCAAAACGGGATGTGGGTAACGGGCAAAACCAAATTCCTGatat > 2:1928056‑M1/1‑50 (MQ=255) GAAGCGGCAAAACGGGATGTGGGTAACGGGCAAAACCAAATTCCTGatat < 1:347999‑M1/50‑1 (MQ=255) GAAGCGGCAAAACGGGATGTGGGTAACGGGCAAAACCAAATTCCTGatat < 1:1877424‑M1/50‑1 (MQ=255) aaGgtgctccagctattggcgttccgttcttctggccctccgcggcaatg > 1:143206‑M1/1‑3 (MQ=255) aaGgtgctccagctattggcgttccgttcttctggccctccgcggcaatg > 2:1577319‑M1/1‑3 (MQ=255) ggtgctccagctattggcgttccgttcttctggccctccgcggcaatgcc < 2:413255‑M1/50‑50 (MQ=255) GCGGCAAAACGGGATGTGGGTAACGGGCAAAACCAAATTCCTGATATGt < 1:984432‑M1/49‑1 (MQ=255) GCGGCAAAACGGGATGTGGGTAACGGGCAAAACCAAATTCCTGATATGTc > 1:762062‑M1/1‑50 (MQ=255) | GCCAGTTGCCCGTTATCTCTGCATTTTCATAAACGTTGGTTTGGGAGAAGCGGCAAAACGGGATGTGGGTAACGGGCAAAACCAAATTCCTGATATGTC > NC_017635/2314064‑2314162 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |