mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 119,500 | A→C | intergenic (+157/‑4) | pdhR → / → aceE | pyruvate dehydrogenase complex transcriptional repressor PdhR/pyruvate dehydrogenase (acetyl‑transferring), homodimeric type |
| MC JC | 1,290,924 | 2651 bp→80 bp | coding (4‑2654/2676 nt) | adhE ← | bifunctional acetaldehyde‑CoA/alcohol dehydrogenase |
| MC JC | 1,749,959 | 1388 bp→80 bp | coding (5‑1392/1413 nt) | pykF → | pyruvate kinase PykF |
| MC JC | 1,931,909 | 1419 bp→81 bp | coding (4‑1422/1443 nt) | pyk → | pyruvate kinase |
| RA | 3,081,838 | G→A | A66T (GCA→ACA) | galP → | galactose/proton symporter |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP009273 | 255803 | 256027 | 225 | 52 [50] | [49] 52 | [phoE] | [phoE] |
| * | * | ÷ | NZ_CP009273 | 578573 | 579155 | 583 | 53 [48] | [49] 52 | [BW25113_RS26085]–[appY] | [BW25113_RS26085],[appY] |
| * | * | ÷ | NZ_CP009273 | 748254 | 748661 | 408 | 52 [50] | [50] 52 | [gltA] | [gltA] |
| * | * | ÷ | NZ_CP009273 | 946672 | 949096 | 2425 | 51 [50] | [49] 52 | pflB–[focA] | pflB,[focA] |
| * | * | ÷ | NZ_CP009273 | 1524242 | 1524739 | 498 | 52 [50] | [47] 52 | BW25113_RS26145–[BW25113_RS25600] | BW25113_RS26145,[BW25113_RS25600] |
| * | * | ÷ | NZ_CP009273 | 1972971 | 1973160 | 190 | 106 [0] | [50] 51 | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC |
| * | * | ÷ | NZ_CP009273 | 2462577 | 2463411 | 835 | 51 [50] | [49] 51 | [yfdH]–[BW25113_RS12270] | [yfdH],[BW25113_RS12270] |
| * | * | ÷ | NZ_CP009273 | 2463508 | 2463986 | 479 | 53 [49] | [47] 59 | [BW25113_RS12270]–[BW25113_RS26185] | [BW25113_RS12270],[BW25113_RS26185] |
| * | * | ÷ | NZ_CP009273 | 3762856 | 3763589 | 734 | 52 [45] | [49] 51 | [BW25113_RS26240] | [BW25113_RS26240] |
| * | * | ÷ | NZ_CP009273 | 3797557 | 3798589 | 1033 | 51 [50] | [50] 52 | [rfaS]–[rfaP] | [rfaS],[rfaP] |
| * | * | ÷ | NZ_CP009273 | 4127770 | 4129012 | 1243 | 52 [49] | [45] 54 | gldA–[fsa] | gldA,[fsa] |
| * | * | ÷ | NZ_CP009273 | 4546125 | 4546569 | 445 | 52 [44] | [49] 57 | [yjiC] | [yjiC] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 360104 = | 61 (0.530) | 77 (0.670) | 51/474 | 1.4 | 56.2% | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | 59 (0.520) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
| * | ? | NZ_CP009273 | 1203246 = | 43 (0.380) | 91 (0.850) | 65/442 | 0.4 | 70.8% | coding (290/630 nt) | BW25113_RS05990 | protein StfP |
| ? | NZ_CP009273 | 1205075 = | 35 (0.330) | coding (40/540 nt) | BW25113_RS06005 | phage tail protein | |||||
| * | ? | NZ_CP009273 | = 1203261 | 43 (0.380) | 95 (0.890) | 73/442 | 0.2 | 71.7% | coding (305/630 nt) | BW25113_RS05990 | protein StfP |
| ? | NZ_CP009273 | = 1205058 | 35 (0.330) | coding (57/540 nt) | BW25113_RS06005 | phage tail protein | |||||
| * | ? | NZ_CP009273 | = 1972970 | 0 (0.000) | 105 (0.920) | 66/474 | 0.5 | 100% | intergenic (‑516/‑264) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC |
| ? | NZ_CP009273 | = 2283592 | NA (NA) | intergenic (‑68/‑387) | BW25113_RS11435/narP | IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP | |||||