mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP022686 | 119,184 | T→G | 11.8% | F47V (TTT→GTT) | marB → | multiple antibiotic resistance protein MarB |
| RA | NZ_CP022686 | 119,210 | C→G | 7.3% | G55G (GGC→GGG) | marB → | multiple antibiotic resistance protein MarB |
| RA | NZ_CP022686 | 196,840 | A→C | 7.4% | N132T (AAC→ACC) | dtpA → | dipeptide/tripeptide permease DtpA |
| RA | NZ_CP022686 | 235,846 | A→C | 6.0% | N287T (AAC→ACC) | pykF → | pyruvate kinase PykF |
| RA | NZ_CP022686 | 238,279 | G→T | 9.9% | F100L (TTC→TTA) | sufE ← | cysteine desulfuration protein SufE |
| RA | NZ_CP022686 | 238,312 | G→T | 8.3% | Y89* (TAC→TAA) | sufE ← | cysteine desulfuration protein SufE |
| RA | NZ_CP022686 | 238,317 | G→T | 13.1% | L88I (CTT→ATT) | sufE ← | cysteine desulfuration protein SufE |
| RA | NZ_CP022686 | 238,323 | A→C | 20.8% | F86V (TTT→GTT) | sufE ← | cysteine desulfuration protein SufE |
| RA | NZ_CP022686 | 263,831 | A→C | 7.7% | intergenic (+38/+19) | fadK → / ← ppsA | medium‑chain fatty‑acid‑‑CoA ligase/phosphoenolpyruvate synthase |
| RA | NZ_CP022686 | 298,027 | A→C | 11.3% | F60C (TTT→TGT) | chbC ← | PTS N,N'‑diacetylchitobiose transporter subunit IIC |
| RA | NZ_CP022686 | 314,813 | T→G | 8.5% | V204G (GTC→GGC) | ynjC → | ABC transporter permease |
| RA | NZ_CP022686 | 349,106 | A→C | 12.7% | T607P (ACC→CCC) | yeaG → | protein kinase YeaG |
| RA | NZ_CP022686 | 360,246 | T→G | 11.9% | E28D (GAA→GAC) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| RA | NZ_CP022686 | 360,256 | C→A | 25.6% | G25V (GGA→GTA) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| RA | NZ_CP022686 | 377,274 | A→C | 11.0% | K136N (AAA→AAC) | manX → | PTS mannose transporter subunit IIAB |
| RA | NZ_CP022686 | 418,379 | T→G | 6.9% | G49G (GGT→GGG) | znuB → | zinc ABC transporter permease subunit ZnuB |
| RA | NZ_CP022686 | 442,342 | A→C | 8.9% | S80A (TCG→GCG) | CIW80_RS02340 ← | phage tail protein |
| RA | NZ_CP022686 | 457,894 | Δ1 bp | 100% | pseudogene (288/997 nt) | CIW80_RS02445 ← | DUF968 domain‑containing protein |
| RA | NZ_CP022686 | 474,664 | C→A | 8.2% | E297* (GAA→TAA) | torZ ← | trimethylamine N‑oxide reductase TorZ |
| RA | NZ_CP022686 | 482,349 | T→G | 6.9% | N172T (AAC→ACC) | flhA ← | flagellar biosynthesis protein FlhA |
| RA | NZ_CP022686 | 498,662 | A→C | 7.4% | C183G (TGT→GGT) | araH ← | arabinose ABC transporter permease AraH |
| RA | NZ_CP022686 | 560,880 | C→T | 100% | intergenic (+62/+53) | CIW80_RS03085 → / ← pilV | hypothetical protein/shufflon system plasmid conjugative transfer pilus tip adhesin PilV |
| RA | NZ_CP022686 | 601,295 | T→G | 17.7% | V1607G (GTC→GGC) | irp1 → | yersiniabactin polyketide synthase HMWP1 |
| RA | NZ_CP022686 | 601,302 | T→G | 20.8% | R1609R (CGT→CGG) | irp1 → | yersiniabactin polyketide synthase HMWP1 |
| RA | NZ_CP022686 | 601,337 | T→G | 8.8% | V1621G (GTT→GGT) | irp1 → | yersiniabactin polyketide synthase HMWP1 |
| MC JC | NZ_CP022686 | 628,478 | Δ1,286 bp | 100% | [clbP] | [clbP] | |
| RA | NZ_CP022686 | 693,021 | A→C | 8.1% | T121P (ACG→CCG) | CIW80_RS03550 → | YaiO family outer membrane beta‑barrel protein |
| RA | NZ_CP022686 | 694,391 | C→A | 11.6% | intergenic (+151/‑45) | CIW80_RS03555 → / → CIW80_RS03560 | transposase/PfkB family carbohydrate kinase |
| RA | NZ_CP022686 | 756,115 | A→G | 100% | G181G (GGT→GGC) | galE ← | UDP‑glucose 4‑epimerase GalE |
| RA | NZ_CP022686 | 759,039 | A→T | 14.7% | L219* (TTA→TAA) | CIW80_RS03960 ← | glycosyltransferase family 2 protein |
| RA | NZ_CP022686 | 764,997 | T→G | 11.6% | N41T (AAC→ACC) | wcaM ← | colanic acid biosynthesis protein WcaM |
| RA | NZ_CP022686 | 765,001 | A→T | 8.8% | Y40N (TAC→AAC) | wcaM ← | colanic acid biosynthesis protein WcaM |
| RA | NZ_CP022686 | 794,460 | C→T | 100% | A568V (GCG→GTG) | dgcE → | diguanylate cyclase |
| RA | NZ_CP022686 | 829,452 | G→T | 24.3% | intergenic (‑41/+186) | gatY ← / ← fbaB | tagatose‑bisphosphate aldolase subunit GatY/class I fructose‑bisphosphate aldolase |
| RA | NZ_CP022686 | 829,467 | C→A | 16.9% | intergenic (‑56/+171) | gatY ← / ← fbaB | tagatose‑bisphosphate aldolase subunit GatY/class I fructose‑bisphosphate aldolase |
| RA | NZ_CP022686 | 829,472 | G→T | 9.4% | intergenic (‑61/+166) | gatY ← / ← fbaB | tagatose‑bisphosphate aldolase subunit GatY/class I fructose‑bisphosphate aldolase |
| RA | NZ_CP022686 | 837,561 | G→T | 10.1% | intergenic (‑134/+89) | thiM ← / ← rcnR | hydroxyethylthiazole kinase/Ni(II)/Co(II)‑binding transcriptional repressor RcnR |
| RA | NZ_CP022686 | 859,954 | A→C | 9.7% | R605R (CGA→CGC) | yehM → | DUF5682 family protein |
| RA | NZ_CP022686 | 896,395 | T→G | 10.8% | W17G (TGG→GGG) | yeiG → | S‑formylglutathione hydrolase |
| RA | NZ_CP022686 | 917,427:1 | +TT | 100% | intergenic (+130/‑91) | yeiP → / → yeiQ | elongation factor P‑like protein YeiP/mannitol dehydrogenase family protein |
| RA | NZ_CP022686 | 948,025 | G→T | 11.8% | intergenic (+94/‑163) | CIW80_RS04855 → / → CIW80_RS04860 | terminase small subunit/hypothetical protein |
| RA | NZ_CP022686 | 948,049 | A→T | 12.2% | intergenic (+118/‑139) | CIW80_RS04855 → / → CIW80_RS04860 | terminase small subunit/hypothetical protein |
| RA | NZ_CP022686 | 948,080 | G→T | 14.3% | intergenic (+149/‑108) | CIW80_RS04855 → / → CIW80_RS04860 | terminase small subunit/hypothetical protein |
| RA | NZ_CP022686 | 948,090 | C→A | 14.3% | intergenic (+159/‑98) | CIW80_RS04855 → / → CIW80_RS04860 | terminase small subunit/hypothetical protein |
| RA | NZ_CP022686 | 1,005,082 | T→A | 9.5% | Y379* (TAT→TAA) | nrdA → | ribonucleoside‑diphosphate reductase subunit alpha |
| RA | NZ_CP022686 | 1,040,909 | A→C | 8.3% | E232D (GAA→GAC) | rbn → | ribonuclease BN |
| RA | NZ_CP022686 | 1,065,978 | A→C | 6.2% | F37V (TTT→GTT) | yfbS ← | SLC13 family permease |
| RA | NZ_CP022686 | 1,100,944 | T→G | 11.0% | D187A (GAC→GCC) | aroC ← | chorismate synthase |
| RA | NZ_CP022686 | 1,131,892 | A→C | 9.9% | V119G (GTG→GGG) | dsdC ← | DNA‑binding transcriptional regulator DsdC |
| RA | NZ_CP022686 | 1,151,773 | T→G | 7.0% | N379T (AAC→ACC) | alaC ← | alanine transaminase |
| RA | NZ_CP022686 | 1,167,039 | A→C | 11.2% | F96V (TTC→GTC) | mntH ← | Nramp family divalent metal transporter |
| RA | NZ_CP022686 | 1,174,272 | A→C | 13.5% | intergenic (+1/‑43) | CIW80_RS05855 → / → CIW80_RS05860 | tRNA‑Val/tRNA‑Val |
| RA | NZ_CP022686 | 1,174,305 | A→T | 7.7% | intergenic (+34/‑10) | CIW80_RS05855 → / → CIW80_RS05860 | tRNA‑Val/tRNA‑Val |
| RA | NZ_CP022686 | 1,195,297 | C→A | 10.2% | K132N (AAG→AAT) | cysP ← | thiosulfate/sulfate ABC transporter substrate‑binding protein CysP |
| RA | NZ_CP022686 | 1,209,908 | T→G | 21.0% | D396A (GAC→GCC) | eutH ← | ethanolamine utilization protein EutH |
| RA | NZ_CP022686 | 1,209,917 | G→T | 14.5% | P393Q (CCA→CAA) | eutH ← | ethanolamine utilization protein EutH |
| RA | NZ_CP022686 | 1,237,929 | C→A | 6.3% | L299F (TTG→TTT) | tmcA ← | tRNA cytosine(34) acetyltransferase TmcA |
| RA | NZ_CP022686 | 1,239,833 | G→T | 12.3% | intergenic (‑130/+38) | ypfJ ← / ← purC | neutral zinc metallopeptidase/phosphoribosylaminoimidazolesuccinocarboxamide synthase |
| RA | NZ_CP022686 | 1,269,551 | T→G | 9.9% | K1124N (AAA→AAC) | CIW80_RS06320 ← | DUF823 domain‑containing adhesin |
| RA | NZ_CP022686 | 1,278,783 | T→G | 7.5% | D242A (GAC→GCC) | bamB ← | outer membrane protein assembly factor BamB |
| RA | NZ_CP022686 | 1,319,604 | T→G | 13.1% | N327T (AAC→ACC) | glyA ← | serine hydroxymethyltransferase |
| RA | NZ_CP022686 | 1,349,193 | A→C | 6.6% | K401N (AAA→AAC) | srmB → | ATP‑dependent RNA helicase SrmB |
| RA | NZ_CP022686 | 1,360,724 | G→T | 13.4% | intergenic (‑59/+265) | kgtP ← / ← rrf | alpha‑ketoglutarate permease/5S ribosomal RNA |
| RA | NZ_CP022686 | 1,360,727 | A→T | 9.5% | intergenic (‑62/+262) | kgtP ← / ← rrf | alpha‑ketoglutarate permease/5S ribosomal RNA |
| RA | NZ_CP022686 | 1,360,756 | C→A | 10.8% | intergenic (‑91/+233) | kgtP ← / ← rrf | alpha‑ketoglutarate permease/5S ribosomal RNA |
| RA | NZ_CP022686 | 1,370,612 | C→A | 14.4% | D81Y (GAT→TAT) | rluD ← | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD |
| RA | NZ_CP022686 | 1,371,086 | G→T | 23.6% | E34* (GAA→TAA) | bamD → | outer membrane protein assembly factor BamD |
| RA | NZ_CP022686 | 1,441,726 | A→C | 8.8% | L612V (TTA→GTA) | hypF ← | carbamoyltransferase HypF |
| RA | NZ_CP022686 | 1,441,772 | A→C | 6.6% | R596R (CGT→CGG) | hypF ← | carbamoyltransferase HypF |
| RA | NZ_CP022686 | 1,443,795 | T→G | 6.7% | T149P (ACC→CCC) | hydN ← | electron transport protein HydN |
| RA | NZ_CP022686 | 1,447,222 | A→C | 10.0% | A27A (GCT→GCG) | hycI ← | hydrogenase maturation peptidase HycI |
| RA | NZ_CP022686 | 1,460,615 | A→C | 10.9% | K673N (AAA→AAC) | flhA → | formate hydrogenlyase transcriptional activator FlhA |
| RA | NZ_CP022686 | 1,479,607 | A→C | 11.5% | intergenic (‑16/+177) | ftsB ← / ← ygbE | cell division protein FtsB/DUF3561 family protein |
| RA | NZ_CP022686 | 1,479,633 | A→C | 12.8% | intergenic (‑42/+151) | ftsB ← / ← ygbE | cell division protein FtsB/DUF3561 family protein |
| RA | NZ_CP022686 | 1,504,250 | T→G | 15.4% | V229V (GTT→GTG) | CIW80_RS07520 → | YgcG family protein |
| RA | NZ_CP022686 | 1,504,258 | G→T | 14.4% | S232I (AGT→ATT) | CIW80_RS07520 → | YgcG family protein |
| RA | NZ_CP022686 | 1,504,289 | T→G | 8.6% | R242R (CGT→CGG) | CIW80_RS07520 → | YgcG family protein |
| RA | NZ_CP022686 | 1,504,310 | G→T | 13.6% | M249I (ATG→ATT) | CIW80_RS07520 → | YgcG family protein |
| RA | NZ_CP022686 | 1,504,323 | C→A | 12.1% | P254T (CCT→ACT) | CIW80_RS07520 → | YgcG family protein |
| RA | NZ_CP022686 | 1,504,353 | G→C | 8.2% | A264P (GCT→CCT) ‡ | CIW80_RS07520 → | YgcG family protein |
| RA | NZ_CP022686 | 1,504,355 | T→A | 9.4% | A264A (GCT→GCA) ‡ | CIW80_RS07520 → | YgcG family protein |
| RA | NZ_CP022686 | 1,535,318 | A→T | 8.7% | M20L (ATG→TTG) | fucI → | L‑fucose isomerase |
| RA | NZ_CP022686 | 1,535,365 | A→C | 24.2% | K35N (AAA→AAC) | fucI → | L‑fucose isomerase |
| RA | NZ_CP022686 | 1,547,003 | G→C | 11.7% | intergenic (+25/‑9) | CIW80_RS07705 → / → CIW80_RS07710 | tRNA‑Met/tRNA‑Met |
| RA | NZ_CP022686 | 1,558,395 | A→C | 15.4% | K464N (AAA→AAC) | vgrG → | type VI secretion system Vgr family protein |
| RA | NZ_CP022686 | 1,597,235 | T→G | 11.7% | N19H (AAC→CAC) | thyA ← | thymidylate synthase |
| RA | NZ_CP022686 | 1,604,862 | A→C | 7.5% | F379V (TTC→GTC) | lplT ← | lysophospholipid transporter LplT |
| RA | NZ_CP022686 | 1,632,480 | T→G | 7.2% | V159G (GTC→GGC) | arcC → | carbamate kinase |
| RA | NZ_CP022686 | 1,632,501 | T→G | 17.8% | V166G (GTT→GGT) | arcC → | carbamate kinase |
| RA | NZ_CP022686 | 1,674,224 | T→G | 14.9% | K188N (AAA→AAC) | ygfB ← | UPF0149 family protein YgfB |
| RA | NZ_CP022686 | 1,674,244 | T→G | 12.4% | T182P (ACC→CCC) | ygfB ← | UPF0149 family protein YgfB |
| RA | NZ_CP022686 | 1,674,248 | T→G | 13.0% | Q180H (CAA→CAC) | ygfB ← | UPF0149 family protein YgfB |
| RA | NZ_CP022686 | 1,705,974 | T→G | 12.8% | intergenic (‑584/‑71) | yqgB ← / → metK | acid stress response protein YqgB/methionine adenosyltransferase |
| RA | NZ_CP022686 | 1,708,105 | T→G | 6.4% | A157A (GCT→GCG) | galP → | galactose/proton symporter |
| RA | NZ_CP022686 | 1,716,145 | A→C | 13.8% | T42P (ACC→CCC) | rdgB → | XTP/dITP diphosphatase |
| RA | NZ_CP022686 | 1,716,154 | A→C | 8.3% | T45P (ACC→CCC) | rdgB → | XTP/dITP diphosphatase |
| RA | NZ_CP022686 | 1,716,167 | A→C | 16.3% | N49T (AAC→ACC) | rdgB → | XTP/dITP diphosphatase |
| RA | NZ_CP022686 | 1,716,202 | A→C | 7.6% | T61P (ACC→CCC) | rdgB → | XTP/dITP diphosphatase |
| RA | NZ_CP022686 | 1,758,771 | T→G | 5.1% | intergenic (+18/‑254) | sat → / → CIW80_RS08700 | serine protease autotransporter toxin Sat/transposase |
| RA | NZ_CP022686 | 1,784,279 | A→C | 8.8% | K111T (AAG→ACG) | CIW80_RS08870 → | IS66 family transposase |
| RA | NZ_CP022686 | 1,805,002 | C→A | 6.5% | pseudogene (283/934 nt) | CIW80_RS09020 → | nucleotidyl transferase AbiEii/AbiGii toxin family protein |
| RA | NZ_CP022686 | 1,805,056 | A→C | 9.7% | pseudogene (337/934 nt) | CIW80_RS09020 → | nucleotidyl transferase AbiEii/AbiGii toxin family protein |
| RA | NZ_CP022686 | 1,833,750 | A→T | 13.7% | V466D (GTC→GAC) | gspD ← | type II secretion system secretin GspD |
| RA | NZ_CP022686 | 1,911,602 | T→G | 14.2% | N224T (AAC→ACC) | CIW80_RS09520 ← | MurR/RpiR family transcriptional regulator |
| RA | NZ_CP022686 | 2,016,153 | T→G | 6.0% | noncoding (121/377 nt) | rnpB ← | RNase P RNA component class A |
| RA | NZ_CP022686 | 2,016,170 | A→C | 7.7% | noncoding (104/377 nt) | rnpB ← | RNase P RNA component class A |
| RA | NZ_CP022686 | 2,027,390 | A→C | 7.4% | K80N (AAA→AAC) | agaE → | PTS N‑acetylgalactosamine transporter subunit IID |
| RA | NZ_CP022686 | 2,047,984 | A→C | 8.6% | R624R (CGT→CGG) | deaD ← | ATP‑dependent RNA helicase DeaD |
| RA | NZ_CP022686 | 2,049,089 | T→G | 19.7% | N256T (AAC→ACC) | deaD ← | ATP‑dependent RNA helicase DeaD |
| RA | NZ_CP022686 | 2,049,094 | G→T | 9.2% | T254T (ACC→ACA) | deaD ← | ATP‑dependent RNA helicase DeaD |
| RA | NZ_CP022686 | 2,049,126 | C→A | 5.3% | D244Y (GAT→TAT) | deaD ← | ATP‑dependent RNA helicase DeaD |
| RA | NZ_CP022686 | 2,056,147 | A→C | 5.8% | G621G (GGT→GGG) | infB ← | translation initiation factor IF‑2 |
| RA | NZ_CP022686 | 2,061,804 | A→C | 10.6% | K391N (AAA→AAC) | argG → | argininosuccinate synthase |
| RA | NZ_CP022686 | 2,110,457 | T→G | 10.5% | K12N (AAA→AAC) | rplM ← | 50S ribosomal protein L13 |
| RA | NZ_CP022686 | 2,110,465 | T→G | 8.1% | T10P (ACC→CCC) | rplM ← | 50S ribosomal protein L13 |
| RA | NZ_CP022686 | 2,110,472 | T→G | 11.0% | K7N (AAA→AAC) | rplM ← | 50S ribosomal protein L13 |
| RA | NZ_CP022686 | 2,130,829 | A→C | 7.8% | V237G (GTT→GGT) | mreC ← | rod shape‑determining protein MreC |
| RA | NZ_CP022686 | 2,148,109 | T→G | 14.6% | V124G (GTG→GGG) | panF → | sodium/pantothenate symporter |
| RA | NZ_CP022686 | 2,148,115 | T→G | 10.5% | L126R (CTG→CGG) | panF → | sodium/pantothenate symporter |
| RA | NZ_CP022686 | 2,148,132 | C→G | 16.6% | L132V (CTG→GTG) | panF → | sodium/pantothenate symporter |
| RA | NZ_CP022686 | 2,184,330 | G→T | 11.4% | F64L (TTC→TTA) | rplO ← | 50S ribosomal protein L15 |
| RA | NZ_CP022686 | 2,185,075 | A→C | 7.2% | V46G (GTT→GGT) | rpsE ← | 30S ribosomal protein S5 |
| RA | NZ_CP022686 | 2,188,229 | G→T | 5.4% | intergenic (‑98/+67) | rplN ← / ← rpsQ | 50S ribosomal protein L14/30S ribosomal protein S17 |
| RA | NZ_CP022686 | 2,194,054 | G→T | 6.3% | Q444K (CAA→AAA) | gspA ← | type II secretion system protein GspA |
| RA | NZ_CP022686 | 2,209,074 | C→A | 5.2% | A258A (GCG→GCT) | chiA ← | bifunctional chitinase/lysozyme |
| RA | NZ_CP022686 | 2,214,419 | T→C | 100% | K43R (AAA→AGA) | rpsL ← | 30S ribosomal protein S12 |
| RA | NZ_CP022686 | 2,222,531 | T→G | 6.8% | F417V (TTT→GTT) | yheS → | ABC transporter ATP‑binding protein |
| RA | NZ_CP022686 | 2,232,148 | T→G | 10.0% | K48N (AAA→AAC) | ppiA ← | peptidylprolyl isomerase A |
| RA | NZ_CP022686 | 2,232,217 | C→A | 6.1% | A25A (GCG→GCT) | ppiA ← | peptidylprolyl isomerase A |
| RA | NZ_CP022686 | 2,272,831 | G→T | 6.7% | intergenic (+73/‑24) | greB → / → yhgF | transcription elongation factor GreB/Tex family protein |
| RA | NZ_CP022686 | 2,320,775 | C→T | 100% | G274S (GGC→AGC) | CIW80_RS11675 ← | DNA‑processing protein DprA |
| RA | NZ_CP022686 | 2,353,173 | T→G | 5.7% | L108V (TTG→GTG) | yhhN → | lysoplasmalogenase |
| RA | NZ_CP022686 | 2,357,291 | A→C | 8.8% | N26T (AAC→ACC) | dcrB → | phage sensitivity protein DcrB |
| RA | NZ_CP022686 | 2,357,322 | T→A | 10.7% | S36R (AGT→AGA) | dcrB → | phage sensitivity protein DcrB |
| RA | NZ_CP022686 | 2,357,324 | A→C | 14.7% | N37T (AAC→ACC) | dcrB → | phage sensitivity protein DcrB |
| RA | NZ_CP022686 | 2,362,954 | T→G | 6.2% | F152V (TTT→GTT) | nikB → | nickel ABC transporter permease subunit NikB |
| RA | NZ_CP022686 | 2,380,936 | A→C | 7.7% | K186N (AAA→AAC) | pitA → | inorganic phosphate transporter PitA |
| RA | NZ_CP022686 | 2,386,496 | T→G | 5.6% | K417N (AAA→AAC) | prlC ← | oligopeptidase A |
| RA | NZ_CP022686 | 2,393,013 | T→G | 5.1% | intergenic (+151/‑2) | slp → / → dctR | outer membrane lipoprotein Slp/LuxR C‑terminal‑related transcriptional regulator |
| RA | NZ_CP022686 | 2,394,287 | T→G | 18.8% | N115T (AAC→ACC) | chuS ← | hematinate‑forming heme oxygenase ChuS |
| RA | NZ_CP022686 | 2,398,896 | A→C | 15.8% | K206N (AAA→AAC) | hutW → | heme anaerobic degradation radical SAM methyltransferase ChuW/HutW |
| RA | NZ_CP022686 | 2,408,861 | Δ1 bp | 100% | pseudogene (1097/3115 nt) | mdtF → | multidrug efflux pump RND permease MdtF |
| RA | NZ_CP022686 | 2,460,576 | C→A | 10.2% | M1M (ATG→ATT) † | yhjY ← | autotransporter outer membrane beta‑barrel domain‑containing protein |
| RA | NZ_CP022686 | 2,460,581 | A→C | 22.7% | intergenic (‑3/‑155) | yhjY ← / → tag | autotransporter outer membrane beta‑barrel domain‑containing protein/DNA‑3‑methyladenine glycosylase I |
| RA | NZ_CP022686 | 2,468,070 | G→T | 10.3% | G9V (GGA→GTA) | CIW80_RS26235 → | hypothetical protein |
| RA | NZ_CP022686 | 2,470,422 | T→G | 12.4% | K72N (AAA→AAC) | glyS ← | glycine‑‑tRNA ligase subunit beta |
| RA | NZ_CP022686 | 2,516,216 | T→C | 7.7% | S542S (TCT→TCC) | upaG → | trimeric autotransporter adhesin UpaG |
| RA | NZ_CP022686 | 2,516,426 | T→A | 7.7% | G612G (GGT→GGA) | upaG → | trimeric autotransporter adhesin UpaG |
| RA | NZ_CP022686 | 2,516,872 | A→C | 6.1% | K761T (AAA→ACA) | upaG → | trimeric autotransporter adhesin UpaG |
| RA | NZ_CP022686 | 2,533,236 | A→C | 7.3% | L301R (CTG→CGG) | tdh ← | L‑threonine 3‑dehydrogenase |
| RA | NZ_CP022686 | 2,555,403 | G→C | 18.5% | intergenic (‑30/+36) | pyrE ← / ← rph | orotate phosphoribosyltransferase/ribonuclease PH |
| RA | NZ_CP022686 | 2,555,413 | A→C | 19.6% | intergenic (‑40/+26) | pyrE ← / ← rph | orotate phosphoribosyltransferase/ribonuclease PH |
| RA | NZ_CP022686 | 2,559,398 | T→G | 7.0% | N461T (AAC→ACC) | ligB ← | NAD‑dependent DNA ligase LigB |
| RA | NZ_CP022686 | 2,572,705 | A→C | 15.8% | G191G (GGT→GGG) | CIW80_RS12885 ← | ROK family protein |
| RA | NZ_CP022686 | 2,574,429 | T→G | 14.6% | N230T (AAC→ACC) | CIW80_RS12895 ← | class II fructose‑bisphosphate aldolase family protein |
| RA | NZ_CP022686 | 2,574,441 | A→T | 6.3% | V226E (GTA→GAA) | CIW80_RS12895 ← | class II fructose‑bisphosphate aldolase family protein |
| JC | NZ_CP022686 | 2,590,563 | +TTGG | 100% | coding (109/153 nt) | CIW80_RS26455 → | hypothetical protein |
| RA | NZ_CP022686 | 2,632,661 | G→T | 6.0% | F112L (TTC→TTA) | dgoT ← | MFS transporter |
| RA | NZ_CP022686 | 2,638,855 | C→A | 6.7% | intergenic (‑170/+70) | yidB ← / ← gyrB | YidB family protein/DNA topoisomerase (ATP‑hydrolyzing) subunit B |
| RA | NZ_CP022686 | 2,736,585 | T→A | 7.6% | Y183N (TAC→AAC) ‡ | rffA → | dTDP‑4‑amino‑4,6‑dideoxygalactose transaminase |
| RA | NZ_CP022686 | 2,736,586 | A→C | 11.9% | Y183S (TAC→TCC) ‡ | rffA → | dTDP‑4‑amino‑4,6‑dideoxygalactose transaminase |
| RA | NZ_CP022686 | 2,743,563 | T→G | 10.4% | noncoding (65/87 nt) | CIW80_RS13750 → | tRNA‑Leu |
| RA | NZ_CP022686 | 2,743,601 | G→T | 9.2% | intergenic (+16/‑27) | CIW80_RS13750 → / → CIW80_RS13755 | tRNA‑Leu/tRNA‑Pro |
| RA | NZ_CP022686 | 2,780,149 | T→G | 6.5% | V690G (GTC→GGC) | metE → | 5‑methyltetrahydropteroyltriglutamate‑‑ homocysteine S‑methyltransferase |
| RA | NZ_CP022686 | 2,801,864 | T→G | 5.2% | L16F (TTA→TTC) | CIW80_RS14030 ← | 2‑dehydro‑3‑deoxy‑6‑phosphogalactonate aldolase |
| RA | NZ_CP022686 | 2,808,132 | A→T | 5.8% | I443F (ATT→TTT) | ubiB → | ubiquinone biosynthesis regulatory protein kinase UbiB |
| RA | NZ_CP022686 | 2,814,142 | A→C | 5.5% | L341R (CTG→CGG) | fadA ← | acetyl‑CoA C‑acyltransferase FadA |
| RA | NZ_CP022686 | 2,836,157 | C→A | 6.1% | intergenic (+275/+107) | polA → / ← yihA | DNA polymerase I/ribosome biogenesis GTP‑binding protein YihA/YsxC |
| RA | NZ_CP022686 | 2,868,740 | T→G | 22.0% | Q22P (CAG→CCG) | fdoH ← | formate dehydrogenase O subunit beta |
| RA | NZ_CP022686 | 2,868,753 | T→G | 13.1% | T18P (ACC→CCC) | fdoH ← | formate dehydrogenase O subunit beta |
| RA | NZ_CP022686 | 2,871,422 | T→G | 8.5% | N149T (AAC→ACC) | fdnG ← | formate dehydrogenase‑N subunit alpha |
| RA | NZ_CP022686 | 2,920,408 | C→A | 6.7% | Q62K (CAA→AAA) | CIW80_RS14610 → | bifunctional UDP‑sugar hydrolase/5'‑nucleotidase |
| RA | NZ_CP022686 | 2,920,418 | C→A | 5.6% | A65E (GCA→GAA) | CIW80_RS14610 → | bifunctional UDP‑sugar hydrolase/5'‑nucleotidase |
| RA | NZ_CP022686 | 2,981,625 | A→C | 9.2% | D571A (GAC→GCC) | rpoC → | DNA‑directed RNA polymerase subunit beta' |
| RA | NZ_CP022686 | 2,989,627 | T→G | 7.5% | Q39H (CAA→CAC) | thiC ← | phosphomethylpyrimidine synthase ThiC |
| RA | NZ_CP022686 | 3,020,229 | T→G | 11.0% | V133G (GTC→GGC) | yjbB → | Na/Pi cotransporter family protein |
| RA | NZ_CP022686 | 3,070,986 | T→G | 8.4% | G53G (GGT→GGG) | CIW80_RS15290 → | 2‑oxoglutarate dehydrogenase E1 component |
| RA | NZ_CP022686 | 3,090,093 | G→T | 7.2% | R12S (CGC→AGC) | yjcB ← | YjcB family protein |
| RA | NZ_CP022686 | 3,136,940 | T→G | 8.6% | D161A (GAC→GCC) | phnN ← | ribose 1,5‑bisphosphokinase |
| RA | NZ_CP022686 | 3,150,252 | T→G | 13.1% | F20V (TTT→GTT) | rdcB → | YjcZ‑like family protein |
| JC | NZ_CP022686 | 3,196,873 | +GCGTAATCGGTT | 100% | coding (944/1122 nt) | ampC ← | BlaEC family class C beta‑lactamase |
| RA | NZ_CP022686 | 3,200,595 | A→C | 7.0% | V199G (GTT→GGT) | frdA ← | fumarate reductase (quinol) flavoprotein subunit |
| RA | NZ_CP022686 | 3,280,824 | T→G | 6.5% | F15V (TTT→GTT) | yjfF → | sugar ABC transporter permease YjfF |
| RA | NZ_CP022686 | 3,280,835 | T→G | 6.0% | G18G (GGT→GGG) | yjfF → | sugar ABC transporter permease YjfF |
| RA | NZ_CP022686 | 3,281,004 | T→G | 10.2% | F75V (TTT→GTT) | yjfF → | sugar ABC transporter permease YjfF |
| RA | NZ_CP022686 | 3,286,882 | C→A | 6.3% | Q63K (CAA→AAA) | cybC → | cytochrome b562 |
| RA | NZ_CP022686 | 3,334,291 | C→A | 7.3% | G250C (GGT→TGT) | fecD ← | Fe(3+) dicitrate ABC transporter permease subunit FecD |
| RA | NZ_CP022686 | 3,348,342 | A→T | 8.3% | intergenic (‑158/‑42) | CIW80_RS16685 ← / → CIW80_RS26495 | inovirus Gp2 family protein/hypothetical protein |
| RA | NZ_CP022686 | 3,348,345 | G→T | 7.1% | intergenic (‑161/‑39) | CIW80_RS16685 ← / → CIW80_RS26495 | inovirus Gp2 family protein/hypothetical protein |
| RA | NZ_CP022686 | 3,348,357 | T→G | 6.7% | intergenic (‑173/‑27) | CIW80_RS16685 ← / → CIW80_RS26495 | inovirus Gp2 family protein/hypothetical protein |
| RA | NZ_CP022686 | 3,387,644 | A→C | 8.0% | L222R (CTG→CGG) | sgcQ ← | BtpA family protein SgcQ |
| RA | NZ_CP022686 | 3,390,616 | C→G | 14.2% | A143P (GCC→CCC) | sgcX ← | M42 family metallopeptidase |
| RA | NZ_CP022686 | 3,390,625 | C→A | 16.7% | D140Y (GAT→TAT) | sgcX ← | M42 family metallopeptidase |
| RA | NZ_CP022686 | 3,424,795 | A→C | 100% | intergenic (‑41/+27) | yjiJ ← / ← yjiK | MFS transporter/YjiK family protein |
| RA | NZ_CP022686 | 3,444,704 | T→G | 15.6% | T530P (ACC→CCC) | btsT ← | pyruvate/proton symporter BtsT |
| RA | NZ_CP022686 | 3,451,834 | C→A | 8.5% | H275N (CAT→AAT) | lgoD → | L‑galactonate oxidoreductase |
| RA | NZ_CP022686 | 3,461,200 | C→A | 11.5% | intergenic (‑9/+26) | CIW80_RS17335 ← / ← CIW80_RS17340 | tRNA‑Leu/tRNA‑Leu |
| RA | NZ_CP022686 | 3,461,215 | A→T | 12.4% | intergenic (‑24/+11) | CIW80_RS17335 ← / ← CIW80_RS17340 | tRNA‑Leu/tRNA‑Leu |
| RA | NZ_CP022686 | 3,461,223 | G→T | 15.0% | intergenic (‑32/+3) | CIW80_RS17335 ← / ← CIW80_RS17340 | tRNA‑Leu/tRNA‑Leu |
| RA | NZ_CP022686 | 3,461,229 | T→G | 23.0% | noncoding (84/87 nt) | CIW80_RS17340 ← | tRNA‑Leu |
| RA | NZ_CP022686 | 3,496,444 | T→G | 10.9% | I270S (ATC→AGC) | thrA → | bifunctional aspartate kinase/homoserine dehydrogenase I |
| RA | NZ_CP022686 | 3,547,355 | T→G | 6.7% | V99G (GTT→GGT) | folA → | type 3 dihydrofolate reductase |
| RA | NZ_CP022686 | 3,604,564 | G→T | 15.1% | intergenic (+80/‑151) | lpxC → / → secM | UDP‑3‑O‑acyl‑N‑acetylglucosamine deacetylase/secA translation cis‑regulator SecM |
| RA | NZ_CP022686 | 3,652,079 | T→G | 11.2% | intergenic (‑88/+24) | panB ← / ← CIW80_RS18255 | 3‑methyl‑2‑oxobutanoate hydroxymethyltransferase/fimbrial‑like adhesin |
| RA | NZ_CP022686 | 3,652,083 | C→G | 6.9% | intergenic (‑92/+20) | panB ← / ← CIW80_RS18255 | 3‑methyl‑2‑oxobutanoate hydroxymethyltransferase/fimbrial‑like adhesin |
| RA | NZ_CP022686 | 3,656,188 | A→G | 100% | S549P (TCC→CCC) | htrE ← | outer membrane usher protein |
| RA | NZ_CP022686 | 3,657,085 | A→T | 6.6% | Y250N (TAC→AAC) | htrE ← | outer membrane usher protein |
| RA | NZ_CP022686 | 3,661,518 | C→A | 14.5% | C9F (TGC→TTC) | pcnB ← | polynucleotide adenylyltransferase PcnB |
| RA | NZ_CP022686 | 3,734,367 | T→G | 19.5% | F225V (TTT→GTT) | yafD → | endonuclease/exonuclease/phosphatase family protein |
| RA | NZ_CP022686 | 3,770,508 | T→G | 6.4% | intergenic (‑244/+219) | CIW80_RS26265 ← / ← CIW80_RS18890 | ATP‑binding protein/hypothetical protein |
| RA | NZ_CP022686 | 3,770,509 | A→T | 9.6% | intergenic (‑245/+218) | CIW80_RS26265 ← / ← CIW80_RS18890 | ATP‑binding protein/hypothetical protein |
| RA | NZ_CP022686 | 3,770,526 | C→G | 7.9% | intergenic (‑262/+201) | CIW80_RS26265 ← / ← CIW80_RS18890 | ATP‑binding protein/hypothetical protein |
| RA | NZ_CP022686 | 3,792,805 | A→G | 100% | Y421C (TAC→TGC) | fucP → | L‑fucose:H+ symporter permease |
| RA | NZ_CP022686 | 3,797,481 | T→G | 14.6% | L130V (TTA→GTA) | CIW80_RS19065 → | LacI family DNA‑binding transcriptional regulator |
| RA | NZ_CP022686 | 3,798,092 | C→A | 8.9% | F333L (TTC→TTA) | CIW80_RS19065 → | LacI family DNA‑binding transcriptional regulator |
| RA | NZ_CP022686 | 3,806,265 | T→A | 9.3% | Y1586N (TAC→AAC) | cdiA → | contact‑dependent inhibition effector tRNA nuclease |
| RA | NZ_CP022686 | 3,818,256 | A→C | 7.4% | V311G (GTG→GGG) | pic ← | serine protease autotransporter toxin Pic |
| RA | NZ_CP022686 | 3,828,913 | T→G | 5.5% | G131G (GGT→GGG) | CIW80_RS19170 → | hypothetical protein |
| RA | NZ_CP022686 | 3,868,846 | T→G | 9.1% | T383P (ACG→CCG) | ecpC ← | fimbrial usher EcpC |
| RA | NZ_CP022686 | 3,881,917 | C→A | 5.2% | S224* (TCG→TAG) | fdeC → | inverse autotransporter adhesin FdeC |
| RA | NZ_CP022686 | 3,885,499 | A→C | 12.5% | intergenic (+2/+123) | fdeC → / ← CIW80_RS19455 | inverse autotransporter adhesin FdeC/helix‑turn‑helix domain‑containing protein |
| RA | NZ_CP022686 | 3,909,251 | G→T | 6.1% | D285Y (GAC→TAC) | pdeL → | DNA‑binding transcriptional activator/c‑di‑GMP phosphodiesterase PdeL |
| RA | NZ_CP022686 | 3,925,289 | A→C | 11.5% | N156T (AAC→ACC) | prpC → | 2‑methylcitrate synthase |
| RA | NZ_CP022686 | 3,928,345 | T→G | 13.7% | F277V (TTC→GTC) | prpE → | propionate‑‑CoA ligase |
| RA | NZ_CP022686 | 3,928,355 | C→G | 11.9% | A280G (GCT→GGT) ‡ | prpE → | propionate‑‑CoA ligase |
| RA | NZ_CP022686 | 3,928,356 | T→G | 8.3% | A280A (GCT→GCG) ‡ | prpE → | propionate‑‑CoA ligase |
| RA | NZ_CP022686 | 3,928,361 | A→T | 7.2% | D282V (GAT→GTT) | prpE → | propionate‑‑CoA ligase |
| RA | NZ_CP022686 | 3,928,369 | T→G | 8.7% | W285G (TGG→GGG) | prpE → | propionate‑‑CoA ligase |
| RA | NZ_CP022686 | 3,935,324 | T→G | 11.7% | N705T (AAC→ACC) | lacZ ← | beta‑galactosidase |
| RA | NZ_CP022686 | 3,940,707 | A→C | 9.2% | F314V (TTT→GTT) | frmA ← | S‑(hydroxymethyl)glutathione dehydrogenase |
| RA | NZ_CP022686 | 3,949,969 | T→G | 11.1% | D141A (GAC→GCC) | hemB ← | porphobilinogen synthase |
| RA | NZ_CP022686 | 3,949,972 | T→G | 5.4% | N140T (AAC→ACC) | hemB ← | porphobilinogen synthase |
| RA | NZ_CP022686 | 3,977,611 | A→C | 6.7% | E73D (GAA→GAC) | phoR → | phosphate regulon sensor histidine kinase PhoR |
| RA | NZ_CP022686 | 3,981,933 | T→G | 12.4% | intergenic (+70/‑86) | proY → / → malZ | proline‑specific permease ProY/maltodextrin glucosidase |
| RA | NZ_CP022686 | 3,984,841 | T→G | 9.3% | R67R (CGT→CGG) | queA → | tRNA preQ1(34) S‑adenosylmethionine ribosyltransferase‑isomerase QueA |
| RA | NZ_CP022686 | 4,014,242 | A→T | 13.1% | intergenic (+88/‑256) | bolA → / → tig | transcriptional regulator BolA/trigger factor |
| RA | NZ_CP022686 | 4,014,250 | C→G | 11.8% | intergenic (+96/‑248) | bolA → / → tig | transcriptional regulator BolA/trigger factor |
| RA | NZ_CP022686 | 4,032,292 | A→C | 15.2% | E106D (GAA→GAC) | glnK → | P‑II family nitrogen regulator |
| RA | NZ_CP022686 | 4,056,962 | C→A | 19.6% | F137L (TTC→TTA) | adk → | adenylate kinase |
| RA | NZ_CP022686 | 4,056,978 | G→T | 9.1% | E143* (GAA→TAA) | adk → | adenylate kinase |
| RA | NZ_CP022686 | 4,067,840 | A→C | 5.7% | K7N (AAA→AAC) | ybaQ → | HigA family addiction module antitoxin |
| RA | NZ_CP022686 | 4,079,328 | G→C | 7.8% | S170* (TCA→TGA) | ybbO ← | NADP(+)‑dependent aldehyde reductase |
| RA | NZ_CP022686 | 4,079,363 | A→C | 11.3% | A158A (GCT→GCG) | ybbO ← | NADP(+)‑dependent aldehyde reductase |
| RA | NZ_CP022686 | 4,118,545 | G→T | 6.7% | S252* (TCA→TAA) | nfrA ← | bacteriophage adsorption protein NfrA |
| RA | NZ_CP022686 | 4,188,944 | A→C | 8.0% | V321G (GTA→GGA) | rlpA ← | endolytic peptidoglycan transglycosylase RlpA |
| RA | NZ_CP022686 | 4,213,261 | A→T | 6.6% | M189L (ATG→TTG) | ubiF → | 3‑demethoxyubiquinol 3‑hydroxylase |
| RA | NZ_CP022686 | 4,214,103 | T→A | 11.0% | intergenic (‑3/+35) | CIW80_RS21080 ← / ← CIW80_RS21085 | tRNA‑Gln/tRNA‑Gln |
| RA | NZ_CP022686 | 4,214,435 | G→C | 9.4% | intergenic (‑8/+27) | CIW80_RS21095 ← / ← CIW80_RS21100 | tRNA‑Gln/tRNA‑Gln |
| RA | NZ_CP022686 | 4,287,456 | T→G | 10.3% | noncoding (47/76 nt) | CIW80_RS21475 → | tRNA‑Val |
| RA | NZ_CP022686 | 4,287,503 | T→G | 7.9% | noncoding (16/76 nt) | CIW80_RS21480 → | tRNA‑Lys |
| RA | NZ_CP022686 | 4,331,751 | T→G | 10.2% | T352P (ACG→CCG) | ybhR ← | ABC transporter permease |
| RA | NZ_CP022686 | 4,368,341 | T→G | 9.4% | D47A (GAC→GCC) | ybiY ← | glycyl‑radical enzyme activating protein |
| RA | NZ_CP022686 | 4,412,284 | A→C | 13.6% | W241G (TGG→GGG) | ybjT ← | SDR family oxidoreductase |
| RA | NZ_CP022686 | 4,435,749 | A→C | 9.5% | intergenic (‑66/+57) | cydD ← / ← trxB | cysteine/glutathione ABC transporter permease/ATP‑binding protein CydD/thioredoxin‑disulfide reductase |
| RA | NZ_CP022686 | 4,440,324 | C→A | 14.1% | P794Q (CCG→CAG) | ftsK → | DNA translocase FtsK |
| RA | NZ_CP022686 | 4,440,334 | A→T | 15.4% | Q797H (CAA→CAT) | ftsK → | DNA translocase FtsK |
| RA | NZ_CP022686 | 4,445,543 | C→G | 10.1% | intergenic (+49/‑190) | serS → / → dmsA | serine‑‑tRNA ligase/dimethylsulfoxide reductase subunit A |
| RA | NZ_CP022686 | 4,562,550 | T→G | 15.8% | N140H (AAC→CAC) | putA ← | trifunctional transcriptional regulator/proline dehydrogenase/L‑glutamate gamma‑semialdehyde dehydrogenase |
| RA | NZ_CP022686 | 4,571,354 | C→A | 10.3% | E87D (GAG→GAT) | pgaC ← | poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine synthase |
| RA | NZ_CP022686 | 4,587,091 | T→G | 12.9% | N609T (AAC→ACC) | CIW80_RS22915 ← | enterotoxin |
| RA | NZ_CP022686 | 4,587,098 | A→T | 6.2% | Y607N (TAT→AAT) | CIW80_RS22915 ← | enterotoxin |
| RA | NZ_CP022686 | 4,589,367 | T→G | 7.5% | T247P (ACC→CCC) | CIW80_RS22920 ← | PatB family C‑S lyase |
| RA | NZ_CP022686 | 4,632,182 | T→G | 11.3% | R276R (CGT→CGG) | mchF → | microcin export transporter peptidase/ATP‑binding subunit MchF |
| RA | NZ_CP022686 | 4,678,033 | T→G | 38.6% | intergenic (+31/‑90) | agn43 → / → CIW80_RS23450 | autotransporter adhesin Ag43/hypothetical protein |
| RA | NZ_CP022686 | 4,678,047 | A→C | 26.0% | intergenic (+45/‑76) | agn43 → / → CIW80_RS23450 | autotransporter adhesin Ag43/hypothetical protein |
| RA | NZ_CP022686 | 4,764,877 | T→G | 12.4% | intergenic (‑57/‑204) | ycfT ← / → lolC | acyltransferase family protein/lipoprotein‑releasing ABC transporter permease subunit LolC |
| RA | NZ_CP022686 | 4,764,880 | T→G | 5.9% | intergenic (‑60/‑201) | ycfT ← / → lolC | acyltransferase family protein/lipoprotein‑releasing ABC transporter permease subunit LolC |
| RA | NZ_CP022686 | 4,764,904 | G→T | 10.6% | intergenic (‑84/‑177) | ycfT ← / → lolC | acyltransferase family protein/lipoprotein‑releasing ABC transporter permease subunit LolC |
| RA | NZ_CP022686 | 4,780,176 | A→C | 12.1% | intergenic (‑75/+95) | phoP ← / ← purB | two‑component system response regulator PhoP/adenylosuccinate lyase |
| RA | NZ_CP022686 | 4,783,334 | A→C | 12.7% | V32G (GTC→GGC) | mnmA ← | tRNA 2‑thiouridine(34) synthase MnmA |
| RA | NZ_CP022686 | 4,804,059 | A→C | 9.9% | E620A (GAG→GCG) | CIW80_RS24225 → | phage terminase large subunit family protein |
| RA | NZ_CP022686 | 4,814,961 | T→G | 10.4% | F61C (TTT→TGT) | CIW80_RS24295 → | phage tail protein |
| RA | NZ_CP022686 | 4,814,990 | T→G | 10.5% | F71V (TTT→GTT) | CIW80_RS24295 → | phage tail protein |
| RA | NZ_CP022686 | 4,839,687 | T→G | 8.8% | N144T (AAC→ACC) | minD ← | septum site‑determining protein MinD |
| RA | NZ_CP022686 | 4,870,912 | Δ1 bp | 100% | intergenic (‑108/‑120) | dhaK ← / → dhaR | dihydroxyacetone kinase subunit DhaK/dihydroxyacetone kinase operon transcriptional regulator DhaR |
| RA | NZ_CP022686 | 4,905,191 | T→G | 15.8% | L106R (CTT→CGT) | CIW80_RS24815 → | coenzyme F390 synthetase |
| RA | NZ_CP022686 | 4,910,213 | A→C | 8.5% | F48V (TTT→GTT) | purU ← | formyltetrahydrofolate deformylase |
| RA | NZ_CP022686 | 4,918,846 | C→A | 9.9% | Q387H (CAG→CAT) | adhE ← | bifunctional acetaldehyde‑CoA/alcohol dehydrogenase |
| RA | NZ_CP022686 | 4,919,017 | T→G | 8.2% | E330D (GAA→GAC) | adhE ← | bifunctional acetaldehyde‑CoA/alcohol dehydrogenase |
| RA | NZ_CP022686 | 4,932,144 | T→G | 9.2% | F124V (TTT→GTT) | tonB → | TonB system transport protein TonB |
| RA | NZ_CP022686 | 4,952,020 | T→G | 6.6% | V205G (GTC→GGC) | topA → | type I DNA topoisomerase |
| RA | NZ_CP022686 | 4,980,895 | A→C | 10.0% | C101W (TGT→TGG) | sapD ← | peptide ABC transporter ATP‑binding protein SapD |
| RA | NZ_CP022686 | 5,001,157 | G→T | 13.4% | D161Y (GAT→TAT) | ompG → | monomeric porin OmpG |
| RA | NZ_CP022686 | 5,043,648 | G→C | 5.3% | V1093V (GTG→GTC) | CIW80_RS25525 → | EntS/YbdA MFS transporter |
| RA | NZ_CP022686 | 5,043,855 | T→A | 10.9% | G1162G (GGT→GGA) | CIW80_RS25525 → | EntS/YbdA MFS transporter |
| RA | NZ_CP022686 | 5,044,182 | T→A | 6.1% | G1271G (GGT→GGA) | CIW80_RS25525 → | EntS/YbdA MFS transporter |
| RA | NZ_CP022686 | 5,044,614 | T→C | 8.1% | G1415G (GGT→GGC) | CIW80_RS25525 → | EntS/YbdA MFS transporter |
| RA | pMUT1‑hok‑empty | 4,123:1 | +T | 94.8% | intergenic (‑341/–) | putative rom (RNA I inhibition modulator protein) ← / – | –/– |
| RA | pMUT1‑hok‑empty | 4,127 | C→A | 100% | intergenic (‑345/–) | putative rom (RNA I inhibition modulator protein) ← / – | –/– |
| RA | pMUT1‑hok‑empty | 4,132 | 4 bp→TA | 100% | intergenic (‑350/–) | putative rom (RNA I inhibition modulator protein) ← / – | –/– |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_MW240712 | 400–2618 | 3048–2957 | 340–2649 | 8835 [8822] | [8663] 9063 | [JNG15_RS00005]–mobA | [JNG15_RS00005],JNG15_RS00010,JNG15_RS00015,mobA |
| * | * | ÷ | pMUT1‑hok‑empty | 1256–1317 | 3987–1721 | 405–2732 | 7481 [7175] | [6991] 8618 | putative HTH domain protein–putative rom (RNA I inhibition modulator protein) | putative HTH domain protein,uncharacterized protein,hypothetical protein,putative rom (RNA I inhibition modulator protein) |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP022686 | 1522881 = | NA (NA) | 8 (0.000) | 8/250 | NT | NA | intergenic (‑394/‑72) | yqcC/CIW80_RS07590 | YqcC family protein/IS3‑like element ISEc52 family transposase |
| ? | pMUT1‑hok‑empty | 1135 = | NA (NA) | intergenic (–/+582) | –/putative HTH domain protein | –/– | |||||
| * | ? | pMUT1‑hok‑empty | 456 = | 5315 (0.450) | 7716 (0.660) | 206/250 | NT | 67.5% | intergenic (–/+1261) | –/putative HTH domain protein | –/– |
| ? | pMUT1‑hok‑empty | 4136 = | 2099 (0.180) | intergenic (‑354/–) | putative rom (RNA I inhibition modulator protein)/– | –/– | |||||
| * | ? | pMUT1‑hok‑empty | = 491 | 7850 (0.670) | 5825 (0.620) | 168/200 | NT | 58.2% | intergenic (–/+1226) | –/putative HTH domain protein | –/– |
| ? | pMUT1‑hok‑empty | = 4098 | 2090 (0.220) | intergenic (‑316/–) | putative rom (RNA I inhibition modulator protein)/– | –/– | |||||