mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 117,256 | T→A | 18.7% | intergenic (+36/+58) | PP_0111 → / ← metQ | electron transport protein SCO1/SenC/methionine ABC transporter substrate‑binding protein |
| RA | 117,258 | C→A | 19.2% | intergenic (+38/+56) | PP_0111 → / ← metQ | electron transport protein SCO1/SenC/methionine ABC transporter substrate‑binding protein |
| RA | 117,271 | A→T | 27.3% | intergenic (+51/+43) | PP_0111 → / ← metQ | electron transport protein SCO1/SenC/methionine ABC transporter substrate‑binding protein |
| RA | 151,037 | G→A | 5.0% | intergenic (‑88/+44) | PP_0142 ← / ← PP_0143 | ABC transporter permease/membrane protein |
| RA | 195,559 | C→A | 37.7% | T355T (ACC→ACA) | PP_0168 → | putative surface adhesion protein |
| RA | 195,628 | C→T | 11.6% | D378D (GAC→GAT) | PP_0168 → | putative surface adhesion protein |
| RA | 195,629 | A→G | 11.7% | T379A (ACC→GCC) | PP_0168 → | putative surface adhesion protein |
| RA | 195,634 | C→T | 49.1% | T380T (ACC→ACT) | PP_0168 → | putative surface adhesion protein |
| RA | 196,306 | T→C | 19.1% | N604N (AAT→AAC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,327 | A→C | 23.5% | T611T (ACA→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,351 | C→G | 24.8% | T619T (ACC→ACG) | PP_0168 → | putative surface adhesion protein |
| RA | 196,390 | T→C | 26.1% | D632D (GAT→GAC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,795 | G→C | 9.0% | T767T (ACG→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,879 | G→A | 19.4% | V795V (GTG→GTA) | PP_0168 → | putative surface adhesion protein |
| RA | 197,032 | C→T | 5.6% | T846T (ACC→ACT) | PP_0168 → | putative surface adhesion protein |
| RA | 197,089 | T→C | 11.5% | N865N (AAT→AAC) | PP_0168 → | putative surface adhesion protein |
| RA | 197,179 | A→G | 6.2% | V895V (GTA→GTG) | PP_0168 → | putative surface adhesion protein |
| RA | 197,185 | C→T | 5.0% | T897T (ACC→ACT) | PP_0168 → | putative surface adhesion protein |
| RA | 197,551 | C→G | 11.1% | T1019T (ACC→ACG) | PP_0168 → | putative surface adhesion protein |
| RA | 197,572 | G→A | 20.4% | K1026K (AAG→AAA) | PP_0168 → | putative surface adhesion protein |
| RA | 197,590 | T→C | 20.5% | D1032D (GAT→GAC) | PP_0168 → | putative surface adhesion protein |
| RA | 197,632 | T→C | 13.6% | T1046T (ACT→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 197,695 | G→C | 11.8% | T1067T (ACG→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 278,742:1 | +A | 100% | intergenic (‑237/+77) | PP_0224 ← / ← sctC | DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein |
| RA | 307,865:1 | +C | 100% | intergenic (+880/‑989) | hslO → / → PP_0254 | molecular chaperone HslO/hypothetical protein |
| RA | 336,124:1 | +T | 100% | coding (209/237 nt) | PP_0278 → | hypothetical protein |
| RA | 337,809 | A→G | 26.3% | intergenic (‑59/+70) | PP_0279 ← / ← PP_0280 | hypothetical protein/amino acid ABC transporter permease |
| RA | 337,816:1 | +A | 29.4% | intergenic (‑66/+63) | PP_0279 ← / ← PP_0280 | hypothetical protein/amino acid ABC transporter permease |
| RA | 337,819 | A→C | 29.2% | intergenic (‑69/+60) | PP_0279 ← / ← PP_0280 | hypothetical protein/amino acid ABC transporter permease |
| RA | 337,822 | C→G | 26.4% | intergenic (‑72/+57) | PP_0279 ← / ← PP_0280 | hypothetical protein/amino acid ABC transporter permease |
| RA | 337,825 | G→T | 23.7% | intergenic (‑75/+54) | PP_0279 ← / ← PP_0280 | hypothetical protein/amino acid ABC transporter permease |
| RA | 337,827 | Δ1 bp | 23.8% | intergenic (‑77/+52) | PP_0279 ← / ← PP_0280 | hypothetical protein/amino acid ABC transporter permease |
| RA | 337,836 | C→T | 30.0% | intergenic (‑86/+43) | PP_0279 ← / ← PP_0280 | hypothetical protein/amino acid ABC transporter permease |
| RA | 353,067 | A→G | 100% | intergenic (+34/+84) | hisF → / ← cbcV | imidazole glycerol phosphate synthase subunit HisF/choline/betaine/carnitine ABC transporter ATP binding protein |
| RA | 441,318 | T→G | 18.8% | W67G (TGG→GGG) | bioF → | 8‑amino‑7‑oxononanoate synthase |
| RA | 470,484 | A→G | 5.0% | L158P (CTG→CCG) | PP_0386 ← | sensory box protein |
| RA | 499,203 | A→G | 100% | intergenic (+47/‑249) | uhpA → / → PP_0411 | two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein |
| RA | 549,164 | C→T | 81.4% | L672F (CTC→TTC) | fusA → | elongation factor G 1 |
| RA | 648,247 | A→T | 18.3% | intergenic (+16/+75) | acoR → / ← accC | acetoin catabolism regulatory protein/acetyl‑CoA carboxylase biotin carboxylase subunit |
| RA | 699,722 | A→G | 51.3% | intergenic (+115/‑129) | PP_t06 → / → PP_23SD | tRNA‑Ala/23S ribosomal RNA |
| RA | 736,921 | G→T | 7.1% | K4N (AAG→AAT) | PP_0629 → | membrane protein |
| RA | 786,526 | A→G | 5.5% | Q127R (CAG→CGG) | PP_0673 → | hypothetical protein |
| RA | 1,042,851 | C→T | 5.3% | H221Y (CAC→TAC) | colS → | integral membrane sensor signal transduction histidine kinase |
| RA | 1,070,246:1 | +G | 82.4% | intergenic (+46/+96) | aroP‑I → / ← PP_0928 | aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein |
| RA | 1,070,246:2 | +A | 82.4% | intergenic (+46/+96) | aroP‑I → / ← PP_0928 | aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein |
| RA | 1,126,645:1 | +C | 100% | intergenic (‑99/+50) | tdcG‑II ← / ← gcvP‑I | L‑serine dehydratase/glycine dehydrogenase |
| RA | 1,168,269 | C→T | 5.1% | A165V (GCA→GTA) | eda → | KHG/KDPG aldolase |
| RA | 1,174,438 | C→T | 7.0% | L106L (CTG→TTG) | PP_1029 → | membrane protein |
| RA | 1,228,465 | T→C | 5.5% | W549R (TGG→CGG) | PP_1072 → | leucine‑rich repeat‑containing protein |
| RA | 1,246,672 | G→T | 17.1% | intergenic (+73/‑298) | PP_1087 → / → argG | OmpA family outer membrane protein/argininosuccinate synthase |
| RA | 1,327,121 | C→T | 45.4% | intergenic (+97/‑196) | PP_16SE → / → PP_23SE | 16S ribosomal RNA/23S ribosomal RNA |
| RA | 1,342,842 | G→A | 5.5% | T237I (ACC→ATC) | PP_1167 ← | TRAP dicarboxylate transporter subunit DctM |
| RA | 1,419,548:1 | +C | 100% | intergenic (‑37/+99) | PP_1242 ← / ← PP_1244 | hypothetical protein/hypothetical protein |
| RA | 1,457,021 | G→A | 6.2% | A153V (GCC→GTC) | PP_1275 ← | hypothetical protein |
| RA | 1,499,480 | 2 bp→AC | 100% | intergenic (+57/‑106) | trpS → / → zapE | tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein |
| RA | 1,499,498 | 1 bp→CG | 100% | intergenic (+75/‑89) | trpS → / → zapE | tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein |
| RA | 1,499,506:1 | +C | 100% | intergenic (+83/‑81) | trpS → / → zapE | tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein |
| RA | 1,698,913 | C→T | 44.3% | Q221* (CAG→TAG) | cheBC → | chemotaxis response regulator protein‑glutamate methylesterase |
| RA | 1,842,800 | T→G | 25.1% | Q665P (CAG→CCG) | gacS ← | sensor protein GacS |
| RA | 1,859,501 | T→G | 5.9% | intergenic (‑93/+63) | PP_1662 ← / ← PP_1663 | hypothetical protein/hypothetical protein |
| RA | 1,916,082 | G→A | 5.7% | L74L (CTG→CTA) | PP_1715 → | hypothetical protein |
| RA | 1,932,638:1 | +C | 100% | intergenic (‑105/+45) | rluA ← / ← minE | bifunctional tRNA pseudouridine(32) synthase TrmQ/ribosomal large subunit pseudouridine synthase RluA/cell division topological specificity factor |
| RA | 2,004,570 | G→A | 5.7% | intergenic (+60/+90) | PP_1787 → / ← PP_1788 | hypothetical protein/hypothetical protein |
| RA | 2,017,246 | Δ1 bp | 100% | intergenic (‑854/‑1480) | PP_1795 ← / → PP_1797 | hypothetical protein/HlyD family secretion protein |
| RA | 2,051,065 | T→G | 26.1% | intergenic (‑63/+23) | PP_1825 ← / ← PP_1826 | hypothetical protein/isochorismatase family hydrolase |
| RA | 2,101,751 | A→C | 16.9% | L186R (CTG→CGG) | PP_1878 ← | hypothetical protein |
| RA | 2,101,760 | T→G | 14.9% | Q183P (CAG→CCG) | PP_1878 ← | hypothetical protein |
| RA | 2,148,619 | C→T | 5.8% | R634H (CGT→CAT) | rne ← | ribonuclease E |
| RA | 2,274,105 | C→T | 5.0% | A88T (GCC→ACC) | PP_2004 ← | AraC family transcriptional regulator |
| JC | 2,282,749 | Δ66 bp | 16.1% | intergenic (‑141/+23) | PP_2010 ← / ← PP_2011 | cytochrome b561/hypothetical protein |
| RA | 2,374,165 | T→C | 5.1% | P332P (CCT→CCC) | ppsA → | phosphoenolpyruvate synthetase |
| RA | 2,461,908 | G→A | 5.2% | D303N (GAC→AAC) | lolC → | lipoprotein releasing system transmembrane protein LolC |
| RA | 2,604,936 | G→A | 5.6% | V13I (GTA→ATA) | PP_2283 → | tail tubular protein A |
| RA | 2,793,757 | T→G | 16.2% | intergenic (+66/+61) | PP_2445 → / ← PP_2446 | membrane protein/hypothetical protein |
| RA | 2,863,829 | T→G | 28.2% | S297A (TCG→GCG) | gllR → | HTH‑type transcriptional regulator GalR |
| RA | 2,896,778 | G→C | 5.3% | G33R (GGT→CGT) | PP_2551 → | LysR family transcriptional regulator |
| RA | 2,930,161 | A→G | 5.9% | L1314P (CTG→CCG) | PP_2566 ← | leucine‑rich repeat‑containing protein |
| JC | 2,957,081 | Δ84 bp | 20.7% | intergenic (+36/‑77) | PP_2588 → / → PP_2589 | class III aminotransferase/aldehyde dehydrogenase family protein |
| RA | 2,958,523 | C→T | 100% | A428V (GCA→GTA) | PP_2589 → | aldehyde dehydrogenase family protein |
| RA | 3,043,852 | T→A | 5.1% | S171T (TCC→ACC) | pstS → | phosphate ABC transporter substrate‑binding protein |
| RA | 3,111,148 | C→G | 5.6% | W117C (TGG→TGC) | pfpI ← | protease PfpI |
| RA | 3,133,167 | C→T | 5.4% | G121G (GGC→GGT) | PP_2750 → | branched‑chain amino acid ABC transporter permease |
| RA | 3,133,526 | T→G | 5.1% | I241S (ATC→AGC) | PP_2750 → | branched‑chain amino acid ABC transporter permease |
| RA | 3,171,774 | A→T | 20.9% | I16F (ATT→TTT) | PP_2784 → | short‑chain dehydrogenase/reductase family oxidoreductase |
| RA | 3,323,603 | T→G | 31.8% | D97A (GAC→GCC) | PP_2923 ← | hypothetical protein |
| RA | 3,365,132 | C→T | 5.6% | A32T (GCA→ACA) | PP_2961 ← | LysR family transcriptional regulator |
| RA | 3,447,286 | A→C | 27.0% | S18R (AGC→CGC) | PP_5556 → | bacteriophage lysis protein |
| RA | 3,447,291 | T→G | 19.3% | A19A (GCT→GCG) | PP_5556 → | bacteriophage lysis protein |
| RA | 3,577,807 | C→T | 5.4% | Y74Y (TAC→TAT) | PP_3158 → | hypothetical protein |
| RA | 3,732,648 | T→C | 5.7% | Q198R (CAG→CGG) | PP_3299 ← | lipoprotein |
| RA | 3,845,703:1 | +G | 100% | intergenic (‑70/+28) | PP_3394 ← / ← PP_3395 | 3‑hydroxy‑3‑methylglutaryl‑CoA lyase/LysR family transcriptional regulator |
| RA | 3,951,159 | T→C | 100% | intergenic (‑123/+72) | PP_3486 ← / ← PP_3487 | cytochrome c/hypothetical protein |
| RA | 3,951,161 | A→T | 100% | intergenic (‑125/+70) | PP_3486 ← / ← PP_3487 | cytochrome c/hypothetical protein |
| RA | 4,013,121 | C→T | 5.3% | intergenic (+57/‑123) | mvaB → / → PP_mr44 | hydroxymethylglutaryl‑CoA lyase/CrcZ ncRNA |
| RA | 4,127,534 | G→A | 5.2% | intergenic (‑174/‑98) | opdT‑II ← / → htrG | tyrosine‑specific outer membrane porin D/signal transduction protein |
| RA | 4,158,466 | T→G | 60.7% | L159R (CTG→CGG) | PP_3661 → | membrane protein |
| RA | 4,158,471 | A→C | 46.6% | S161R (AGC→CGC) | PP_3661 → | membrane protein |
| RA | 4,253,088 | C→A | 6.8% | S197S (TCG→TCT) | rocE ← | amino acid permease RocE |
| RA | 4,258,451 | G→A | 5.8% | intergenic (‑114/‑3) | PP_3731 ← / → PP_3732 | TetR family transcriptional regulator/enoyl‑CoA hydratase/isomerase family protein |
| MC JC | 4,274,119 | 32 bp→45 bp | 100% | intergenic (‑243/‑1) | glcC ← / → glcD | transcriptional regulator GlcC/glycolate oxidase FAD‑linked subunit |
| RA | 4,337,784 | T→C | 5.8% | F106S (TTC→TCC) | PP_3812 → | lipase |
| RA | 4,348,812 | A→G | 58.9% | intergenic (‑70/+404) | PP_3820 ← / ← galU | group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase |
| RA | 4,442,726 | A→C | 27.6% | intergenic (‑89/+49) | nicP‑II ← / ← nicT | porin‑like protein/metabolite transport protein NicT |
| RA | 4,551,577 | T→G | 20.2% | V280G (GTG→GGG) | pydA → | NADP‑dependent dihydropyrimidine dehydrogenase subunit PreA |
| RA | 4,586,137 | 2 bp→TC | 100% | intergenic (+113/+101) | PP_4061 → / ← PP_4063 | hypothetical protein/long‑chain fatty acid‑‑CoA ligase |
| RA | 4,586,140:1 | +G | 100% | intergenic (+116/+99) | PP_4061 → / ← PP_4063 | hypothetical protein/long‑chain fatty acid‑‑CoA ligase |
| RA | 4,586,163:1 | +C | 65.6% | intergenic (+139/+76) | PP_4061 → / ← PP_4063 | hypothetical protein/long‑chain fatty acid‑‑CoA ligase |
| RA | 4,586,164:1 | +C | 34.3% | intergenic (+140/+75) | PP_4061 → / ← PP_4063 | hypothetical protein/long‑chain fatty acid‑‑CoA ligase |
| RA | 4,635,418 | A→G | 37.8% | S149P (TCC→CCC) | uvrY ← | BarA/UvrY two‑componenent system response regulator |
| RA | 4,714,929 | T→C | 9.1% | L18P (CTC→CCC) | PP_4173 → | two‑component system sensor histidine kinase/response regulator |
| RA | 4,714,983 | G→A | 13.0% | R36H (CGC→CAC) | PP_4173 → | two‑component system sensor histidine kinase/response regulator |
| RA | 4,740,912 | Δ1 bp | 100% | intergenic (+42/+711) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,740,923 | T→G | 100% | intergenic (+53/+700) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,740,926 | 2 bp→CT | 100% | intergenic (+56/+696) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,336 | A→C | 100% | intergenic (+466/+287) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,338 | C→G | 100% | intergenic (+468/+285) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,341 | C→T | 100% | intergenic (+471/+282) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,343 | 2 bp→TG | 100% | intergenic (+473/+279) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,346 | A→G | 100% | intergenic (+476/+277) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,350 | 3 bp→TGC | 100% | intergenic (+480/+271) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,362 | C→T | 100% | intergenic (+492/+261) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,364 | A→C | 100% | intergenic (+494/+259) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,367 | 2 bp→GC | 100% | intergenic (+497/+255) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,370 | A→C | 100% | intergenic (+500/+253) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,379 | A→G | 100% | intergenic (+509/+244) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,381 | A→C | 100% | intergenic (+511/+242) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,383 | G→C | 100% | intergenic (+513/+240) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,385 | C→T | 100% | intergenic (+515/+238) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,390:1 | +T | 100% | intergenic (+520/+233) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,396 | C→G | 100% | intergenic (+526/+227) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,399 | C→T | 100% | intergenic (+529/+224) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,401 | C→G | 100% | intergenic (+531/+222) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,403 | A→C | 100% | intergenic (+533/+220) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,405 | C→T | 100% | intergenic (+535/+218) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,761,289 | C→T | 5.7% | A415V (GCC→GTC) | pvdM → | dipeptidase |
| RA | 4,767,982 | A→T | 100% | intergenic (+89/‑93) | fpvA → / → tpaK | TonB‑dependent outer membrane ferripyoverdine receptor FpvA/probable terephthalate transporter, MFS superfamily protein |
| RA | 4,767,984 | T→G | 100% | intergenic (+91/‑91) | fpvA → / → tpaK | TonB‑dependent outer membrane ferripyoverdine receptor FpvA/probable terephthalate transporter, MFS superfamily protein |
| RA | 4,768,005 | T→A | 100% | intergenic (+112/‑70) | fpvA → / → tpaK | TonB‑dependent outer membrane ferripyoverdine receptor FpvA/probable terephthalate transporter, MFS superfamily protein |
| RA | 4,793,487 | Δ1 bp | 7.4% | coding (2056/6525 nt) | pvdI ← | non‑ribosomal peptide synthetase |
| RA | 4,798,322 | A→G | 18.6% | intergenic (‑177/+41) | pvdH ← / ← PP_4224 | diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase |
| RA | 4,844,355 | G→A | 5.6% | T258T (ACG→ACA) | ccoP‑II → | cbb3‑type cytochrome c oxidase subunit |
| RA | 4,850,315 | G→C | 25.7% | intergenic (+17/‑89) | PP_4263 → / → hemN | cytochrome biogenesis protein/oxygen‑independent coproporphyrinogen III dehydrogenase |
| RA | 4,857,368 | Δ1 bp | 5.1% | coding (444/807 nt) | PP_4270 → | hypothetical protein |
| MC JC | 4,875,480 | Δ756 bp | 100% | coding (1‑756/756 nt) | PP_4283 ← | GntR family transcriptional regulator |
| RA | 4,901,768 | A→G | 5.3% | intergenic (+26/‑472) | PP_4308 → / → PP_4309 | AsnC family transcriptional regulator/NCS1 family transporter |
| RA | 4,901,772 | G→A | 5.5% | intergenic (+30/‑468) | PP_4308 → / → PP_4309 | AsnC family transcriptional regulator/NCS1 family transporter |
| RA | 4,901,773 | T→C | 5.5% | intergenic (+31/‑467) | PP_4308 → / → PP_4309 | AsnC family transcriptional regulator/NCS1 family transporter |
| RA | 4,935,652 | A→G | 6.5% | L167P (CTG→CCG) | flhF ← | flagellar biosynthesis protein FlhF |
| RA | 4,952,675 | T→G | 33.4% | intergenic (‑122/+35) | fliL ← / ← fliK | flagellar protein FliL/flagellar hook‑length control protein FliK |
| JC | 4,982,288 | +GGC | 100% | intergenic (‑24/+44) | PP_4387 ← / ← flgE | hypothetical protein/flagellar hook protein FlgE |
| RA | 5,044,344 | C→A | 8.2% | L320I (CTT→ATT) | PP_4447 → | hypothetical protein |
| RA | 5,081,287 | C→T | 5.4% | intergenic (‑55/+17) | PP_t54 ← / ← PP_t53 | tRNA‑Arg/tRNA‑Arg |
| RA | 5,161,454 | T→C | 20.8% | intergenic (+14/+92) | PP_4542 → / ← PP_4543 | ABC transporter ATP‑binding protein/permease/hypothetical protein |
| RA | 5,196,590 | T→G | 23.3% | intergenic (+29/+24) | PP_4574 → / ← PP_4575 | hypothetical protein/urea amidolyase‑like protein |
| JC | 5,290,103 | Δ142 bp | 7.0% | [mdaB] | [mdaB] | |
| RA | 5,317,755 | C→T | 5.4% | intergenic (‑120/+31) | PP_4677 ← / ← ilvC | CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase/ketol‑acid reductoisomerase |
| RA | 5,317,756 | G→T | 5.3% | intergenic (‑121/+30) | PP_4677 ← / ← ilvC | CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase/ketol‑acid reductoisomerase |
| RA | 5,317,757 | A→C | 6.0% | intergenic (‑122/+29) | PP_4677 ← / ← ilvC | CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase/ketol‑acid reductoisomerase |
| RA | 5,317,758 | A→G | 5.2% | intergenic (‑123/+28) | PP_4677 ← / ← ilvC | CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase/ketol‑acid reductoisomerase |
| RA | 5,339,745 | A→C | 16.2% | intergenic (+49/‑235) | PP_4696 → / → PP_mr53 | nitrogen regulation protein NR(I)/CrcZ ncRNA |
| RA | 5,396,064 | A→G | 100% | V231A (GTA→GCA) | tphBII ← | 4‑hydroxythreonine‑4‑phosphate dehydrogenase |
| RA | 5,462,551 | T→C | 5.5% | F52S (TTC→TCC) | holA → | DNA polymerase III subunit delta |
| RA | 5,512,711 | A→C | 31.4% | Q32P (CAG→CCG) | urtB → | urea ABC transporter permease |
| RA | 5,512,720 | T→G | 20.2% | L35R (CTG→CGG) | urtB → | urea ABC transporter permease |
| RA | 5,512,723 | T→G | 17.9% | L36R (CTC→CGC) | urtB → | urea ABC transporter permease |
| JC | 5,558,423 | +GCC | 89.7% | intergenic (‑84/+87) | PP_4887 ← / ← PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer |
| RA | 5,569,190 | C→A | 5.1% | A371S (GCC→TCC) | mutL ← | DNA mismatch repair protein MutL |
| RA | 5,658,446 | T→G | 15.5% | intergenic (‑86/+66) | epd ← / ← tktA | D‑erythrose 4‑phosphate dehydrogenase/transketolase A |
| RA | 5,658,451 | C→A | 14.6% | intergenic (‑91/+61) | epd ← / ← tktA | D‑erythrose 4‑phosphate dehydrogenase/transketolase A |
| RA | 5,658,456 | Δ1 bp | 14.7% | intergenic (‑96/+56) | epd ← / ← tktA | D‑erythrose 4‑phosphate dehydrogenase/transketolase A |
| RA | 5,677,565:1 | +G | 100% | intergenic (+112/+28) | rhlE‑II → / ← yceI | ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor |
| RA | 5,677,568 | G→C | 100% | intergenic (+115/+25) | rhlE‑II → / ← yceI | ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor |
| RA | 5,679,414 | A→T | 7.0% | V469D (GTT→GAT) | PP_4983 ← | amine oxidase |
| JC | 5,684,230 | +CGGG | 80.5% | intergenic (‑133/+71) | PP_4986 ← / ← PP_4987 | hemolysin III family channel protein/putative Chemotaxis protein |
| RA | 5,698,515 | C→T | 5.4% | L142L (CTG→TTG) | pyrC' → | dihydroorotase‑like protein |
| RA | 5,754,561 | A→C | 25.2% | intergenic (‑184/‑287) | thiI ← / → glnA | tRNA sulfurtransferase/glutamine synthetase |
| RA | 5,930,752 | C→G | 19.1% | intergenic (‑43/+110) | PP_5195 ← / ← fbpA | iron ABC transporter permease/iron ABC transporter substrate‑binding protein |
| RA | 5,951,595 | T→C | 5.1% | K84R (AAG→AGG) | trxA ← | thioredoxin I |
| RA | 5,991,624 | G→A | 21.0% | intergenic (+103/‑443) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,991,634 | T→C | 19.6% | intergenic (+113/‑433) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,991,639 | C→T | 15.7% | intergenic (+118/‑428) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,991,640 | G→T | 15.7% | intergenic (+119/‑427) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,991,641 | C→T | 16.0% | intergenic (+120/‑426) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,991,644 | A→G | 15.4% | intergenic (+123/‑423) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,991,650 | G→C | 14.0% | intergenic (+129/‑417) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,991,652 | C→G | 14.1% | intergenic (+131/‑415) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,991,655 | C→T | 14.3% | intergenic (+134/‑412) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,991,659 | C→G | 13.6% | intergenic (+138/‑408) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,991,663 | C→T | 13.8% | intergenic (+142/‑404) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,991,665 | C→T | 13.5% | intergenic (+144/‑402) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,991,709 | C→T | 12.5% | intergenic (+188/‑358) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,991,710 | A→G | 12.5% | intergenic (+189/‑357) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,991,720 | T→C | 13.1% | intergenic (+199/‑347) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,991,726 | Δ1 bp | 13.1% | intergenic (+205/‑341) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 6,016,700 | T→C | 100% | intergenic (+90/+20) | xpt → / ← PP_5266 | xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein |
| RA | 6,135,416 | T→C | 11.6% | T418A (ACC→GCC) | copA‑II ← | copper resistance protein A |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947_CJ‑RC | = 883862 | 5 (0.060) | 4 (0.070) | 4/206 | NT | 36.7% | intergenic (+100/‑228) | PP_0766/PP_0767 | hypothetical protein/LuxR family transcriptional regulator |
| ? | NC_002947_CJ‑RC | = 883872 | 10 (0.170) | intergenic (+110/‑218) | PP_0766/PP_0767 | hypothetical protein/LuxR family transcriptional regulator | |||||
| * | ? | NC_002947_CJ‑RC | 1737987 = | 70 (0.890) | 4 (0.060) | 4/236 | NT | 5.8% | coding (32/348 nt) | yffB | glutathione‑dependent thiol reductase |
| ? | NC_002947_CJ‑RC | = 1777401 | 69 (1.010) | intergenic (+135/+157) | PP_5476/PP_1585 | hypothetical protein/antidote protein | |||||
| * | ? | NC_002947_CJ‑RC | 1844134 = | 55 (0.700) | 32 (0.420) | 28/260 | NT | 30.6% | coding (660/2754 nt) | gacS | sensor protein GacS |
| ? | NC_002947_CJ‑RC | = 2179376 | 92 (1.220) | intergenic (+175/+93) | PP_1931/PP_5486 | hypothetical protein/hypothetical protein | |||||
| * | ? | NC_002947_CJ‑RC | = 1844137 | 62 (0.790) | 14 (0.180) | 13/262 | NT | 16.1% | coding (657/2754 nt) | gacS | sensor protein GacS |
| ? | NC_002947_CJ‑RC | 2177702 = | 86 (1.130) | intergenic (+103/‑63) | PP_5485/PP_1931 | GNAT family acetyltransferase/hypothetical protein | |||||
| * | ? | NC_002947_CJ‑RC | 2099960 = | 18 (0.230) | 3 (0.050) | 3/224 | NT | 14.0% | intergenic (‑71/‑134) | PP_1875/PP_1876 | two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein |
| ? | NC_002947_CJ‑RC | 2100055 = | 22 (0.340) | intergenic (‑166/‑39) | PP_1875/PP_1876 | two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein | |||||
| * | ? | NC_002947_CJ‑RC | = 2472115 | 33 (0.420) | 3 (0.040) | 3/256 | NT | 6.3% | intergenic (+19/+130) | PP_2166/PP_2167 | anti‑anti‑sigma factor/PhoD‑like phosphatase |
| ? | NC_002947_CJ‑RC | 2472313 = | 58 (0.780) | coding (1783/1851 nt) | PP_2167 | PhoD‑like phosphatase | |||||
| * | ? | NC_002947_CJ‑RC | 3366553 = | 70 (0.890) | 20 (0.250) | 17/270 | NT | 26.7% | intergenic (+219/‑142) | PP_2962/PP_2964 | alcohol dehydrogenase/transposase |
| ? | NC_002947_CJ‑RC | 4905110 = | 40 (0.510) | coding (720/1194 nt) | PP_4311 | D‑amino acid dehydrogenase small subunit | |||||
| * | ? | NC_002947_CJ‑RC | 3366553 = | 70 (0.890) | 6 (0.080) | 5/266 | NT | 8.3% | intergenic (+219/‑142) | PP_2962/PP_2964 | alcohol dehydrogenase/transposase |
| ? | NC_002947_CJ‑RC | 4933426 = | 64 (0.830) | coding (495/741 nt) | fliA | RNA polymerase sigma 28 factor | |||||
| * | ? | NC_002947_CJ‑RC | = 3383566 | 94 (1.200) | 6 (0.080) | 6/268 | NT | 7.0% | coding (500/546 nt) | PP_2985 | hypothetical protein |
| ? | NC_002947_CJ‑RC | = 4933429 | 65 (0.830) | coding (492/741 nt) | fliA | RNA polymerase sigma 28 factor | |||||
| * | ? | NC_002947_CJ‑RC | = 3383567 | 94 (1.200) | 27 (0.350) | 25/266 | NT | 29.1% | coding (499/546 nt) | PP_2985 | hypothetical protein |
| ? | NC_002947_CJ‑RC | = 4905112 | 39 (0.500) | coding (718/1194 nt) | PP_4311 | D‑amino acid dehydrogenase small subunit | |||||
| * | ? | NC_002947_CJ‑RC | 3947913 = | 35 (0.450) | 3 (0.050) | 3/214 | NT | 13.1% | coding (136/1797 nt) | PP_3483 | type II secretion system protein |
| ? | NC_002947_CJ‑RC | 3947998 = | 12 (0.190) | coding (51/1797 nt) | PP_3483 | type II secretion system protein | |||||
| * | ? | NC_002947_CJ‑RC | = 3968879 | NA (NA) | 3 (0.040) | 3/256 | NT | 6.4% | coding (1007/1179 nt) | PP_3498 | transposase |
| ? | NC_002947_CJ‑RC | 3968942 = | 46 (0.590) | coding (1070/1179 nt) | PP_3498 | transposase | |||||
| * | ? | NC_002947_CJ‑RC | 4586141 = | 36 (0.460) | 5 (0.080) | 5/226 | NT | 22.7% | intergenic (+117/+98) | PP_4061/PP_4063 | hypothetical protein/long‑chain fatty acid‑‑CoA ligase |
| ? | NC_002947_CJ‑RC | 4586212 = | 4 (0.060) | intergenic (+188/+27) | PP_4061/PP_4063 | hypothetical protein/long‑chain fatty acid‑‑CoA ligase | |||||
| * | ? | NC_002947_CJ‑RC | 4809877 = | 0 (0.000) | 9 (0.150) | 7/200 | NT | 30.5% | intergenic (‑283/‑272) | PP_4234/dsbD‑II | bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| ? | NC_002947_CJ‑RC | = 5991750 | 41 (0.700) | intergenic (+229/‑317) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA | |||||
| * | ? | NC_002947_CJ‑RC | = 4809882 | 0 (0.000) | 24 (0.340) | 20/246 | NT | 57.8% | intergenic (‑288/‑267) | PP_4234/dsbD‑II | bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| ? | NC_002947_CJ‑RC | 5991580 = | 35 (0.490) | intergenic (+59/‑487) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA | |||||
| * | ? | NC_002947_CJ‑RC | 4890430 = | 65 (0.830) | 5 (0.070) | 5/252 | NT | 7.4% | intergenic (+10/‑45) | gcl/hyi | glyoxylate carboligase/hydroxypyruvate isomerase |
| ? | NC_002947_CJ‑RC | 4890453 = | 64 (0.870) | intergenic (+33/‑22) | gcl/hyi | glyoxylate carboligase/hydroxypyruvate isomerase | |||||
| * | ? | NC_002947_CJ‑RC | = 5384105 | 28 (0.360) | 6 (0.080) | 6/260 | NT | 10.2% | intergenic (+22/+111) | smpB/pdhR | SsrA‑binding protein/DNA‑binding transcriptional regulator LldR |
| ? | NC_002947_CJ‑RC | 5384308 = | 79 (1.040) | coding (676/768 nt) | pdhR | DNA‑binding transcriptional regulator LldR | |||||
| * | ? | NC_002947_CJ‑RC | = 5991572 | 36 (0.460) | 4 (0.050) | 4/254 | NT | 9.8% | intergenic (+51/‑495) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| ? | NC_002947_CJ‑RC | 5991794 = | 40 (0.540) | intergenic (+273/‑273) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA | |||||
| * | ? | NC_002947_CJ‑RC | = 5991586 | 34 (0.430) | 11 (0.150) | 11/254 | NT | 22.0% | intergenic (+65/‑481) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| ? | NC_002947_CJ‑RC | 5991778 = | 46 (0.620) | intergenic (+257/‑289) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA | |||||