mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947_CJ‑RC | = 5328171 | 88 (1.120) | 3 (0.040) | 3/262 | NT | 3.4% | intergenic (‑37/+66) | PP_4686/hmuV | putative lipoprotein/hemin import ATP‑binding protein HmuV |
| ? | NC_002947_CJ‑RC | = 5328184 | 84 (1.100) | intergenic (‑50/+53) | PP_4686/hmuV | putative lipoprotein/hemin import ATP‑binding protein HmuV | |||||
| * | ? | NC_002947_CJ‑RC | 4951490 = | 81 (1.030) | 4 (0.050) | 4/270 | NT | 4.6% | coding (557/969 nt) | fliM | flagellar biosynthesis switching/energizing protein |
| ? | NC_002947_CJ‑RC | = 5400063 | 84 (1.070) | coding (260/1731 nt) | hsdS | type I restriction modification system specificity protein | |||||
| * | ? | NC_002947_CJ‑RC | 4946748 = | 86 (1.100) | 3 (0.040) | 3/270 | NT | 3.2% | intergenic (+405/+393) | PP_5673/flhB | D‑alanine‑‑D‑alanine ligase/flagellin export apparatus substrate specificity protein |
| ? | NC_002947_CJ‑RC | = 5399723 | 94 (1.200) | coding (1134/1218 nt) | hsdM | type I restriction modification system methylase | |||||
| * | ? | NC_002947_CJ‑RC | = 2472140 | 21 (0.270) | 3 (0.050) | 3/192 | NT | 15.0% | intergenic (+44/+105) | PP_2166/PP_2167 | anti‑anti‑sigma factor/PhoD‑like phosphatase |
| ? | NC_002947_CJ‑RC | = 2472186 | 19 (0.340) | intergenic (+90/+59) | PP_2166/PP_2167 | anti‑anti‑sigma factor/PhoD‑like phosphatase | |||||
| * | ? | NC_002947_CJ‑RC | = 2464266 | 77 (0.980) | 4 (0.050) | 3/252 | NT | 5.3% | intergenic (+21/+19) | lolE/PP_2157 | lipoprotein releasing system permease/sensor histidine kinase |
| ? | NC_002947_CJ‑RC | = 2464276 | 72 (0.980) | intergenic (+31/+9) | lolE/PP_2157 | lipoprotein releasing system permease/sensor histidine kinase | |||||
| * | ? | NC_002947_CJ‑RC | = 2314205 | 71 (0.900) | 3 (0.040) | 3/256 | NT | 4.3% | intergenic (‑118/+32) | benE‑I/PP_2036 | benzoate transport protein/4‑hydroxy‑tetrahydrodipicolinate synthase |
| ? | NC_002947_CJ‑RC | = 2314220 | 67 (0.900) | intergenic (‑133/+17) | benE‑I/PP_2036 | benzoate transport protein/4‑hydroxy‑tetrahydrodipicolinate synthase | |||||
| * | ? | NC_002947_CJ‑RC | 510286 = | 82 (1.040) | 3 (0.040) | 3/254 | NT | 3.7% | coding (306/1050 nt) | trpD | anthranilate phosphoribosyltransferase |
| ? | NC_002947_CJ‑RC | = 510282 | 79 (1.070) | coding (302/1050 nt) | trpD | anthranilate phosphoribosyltransferase | |||||
| * | ? | NC_002947_CJ‑RC | = 219919 | 88 (1.120) | 3 (0.040) | 3/262 | NT | 3.3% | coding (25425/26049 nt) | PP_0168 | putative surface adhesion protein |
| ? | NC_002947_CJ‑RC | = 219942 | 93 (1.220) | coding (25448/26049 nt) | PP_0168 | putative surface adhesion protein | |||||