mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 4,968 | A→C | 15.1% | intergenic (‑587/+44) | trmF ← / ← trmE | tRNA uridine 5‑carboxymethylaminomethyl modification protein/GTPase |
| RA | 26,837:1 | +A | 5.2% | intergenic (+33/+152) | PP_0021 → / ← PP_0022 | hypothetical protein/hypothetical protein |
| RA | 26,844 | A→T | 5.6% | intergenic (+40/+145) | PP_0021 → / ← PP_0022 | hypothetical protein/hypothetical protein |
| RA | 117,256 | T→A | 25.8% | intergenic (+36/+58) | PP_0111 → / ← metQ | electron transport protein SCO1/SenC/methionine ABC transporter substrate‑binding protein |
| RA | 117,262 | G→C | 25.8% | intergenic (+42/+52) | PP_0111 → / ← metQ | electron transport protein SCO1/SenC/methionine ABC transporter substrate‑binding protein |
| RA | 170,622 | G→T | 6.0% | G342W (GGG→TGG) | PP_0159 → | family III CoA‑transferase |
| RA | 195,559 | C→A | 33.5% | T355T (ACC→ACA) | PP_0168 → | putative surface adhesion protein |
| RA | 195,628 | C→T | 8.9% | D378D (GAC→GAT) | PP_0168 → | putative surface adhesion protein |
| RA | 195,629 | A→G | 8.3% | T379A (ACC→GCC) | PP_0168 → | putative surface adhesion protein |
| RA | 195,634 | C→T | 48.7% | T380T (ACC→ACT) | PP_0168 → | putative surface adhesion protein |
| RA | 196,306 | T→C | 20.6% | N604N (AAT→AAC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,327 | A→C | 21.5% | T611T (ACA→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,351 | C→G | 23.2% | T619T (ACC→ACG) | PP_0168 → | putative surface adhesion protein |
| RA | 196,390 | T→C | 26.7% | D632D (GAT→GAC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,795 | G→C | 9.9% | T767T (ACG→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,879 | G→A | 23.6% | V795V (GTG→GTA) | PP_0168 → | putative surface adhesion protein |
| RA | 197,032 | C→T | 8.9% | T846T (ACC→ACT) | PP_0168 → | putative surface adhesion protein |
| RA | 197,089 | T→C | 12.5% | N865N (AAT→AAC) | PP_0168 → | putative surface adhesion protein |
| RA | 197,185 | C→T | 5.4% | T897T (ACC→ACT) | PP_0168 → | putative surface adhesion protein |
| RA | 197,551 | C→G | 9.9% | T1019T (ACC→ACG) | PP_0168 → | putative surface adhesion protein |
| RA | 197,572 | G→A | 15.6% | K1026K (AAG→AAA) | PP_0168 → | putative surface adhesion protein |
| RA | 197,590 | T→C | 16.6% | D1032D (GAT→GAC) | PP_0168 → | putative surface adhesion protein |
| RA | 197,632 | T→C | 14.6% | T1046T (ACT→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 197,695 | G→C | 13.2% | T1067T (ACG→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 278,742:1 | +A | 100% | intergenic (‑237/+77) | PP_0224 ← / ← sctC | DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein |
| RA | 307,865:1 | +C | 100% | intergenic (+880/‑989) | hslO → / → PP_0254 | molecular chaperone HslO/hypothetical protein |
| RA | 326,065 | C→A | 8.4% | *556Y (TAG→TAT) | PP_0269 ← | glutamate synthase large subunit |
| RA | 336,124:1 | +T | 100% | coding (209/237 nt) | PP_0278 → | hypothetical protein |
| RA | 353,067 | A→G | 100% | intergenic (+34/+84) | hisF → / ← cbcV | imidazole glycerol phosphate synthase subunit HisF/choline/betaine/carnitine ABC transporter ATP binding protein |
| RA | 432,993 | A→T | 5.4% | intergenic (+18/+29) | PP_0355 → / ← glcB | two‑component system response regulator/malate synthase G |
| RA | 432,994 | A→T | 6.6% | intergenic (+19/+28) | PP_0355 → / ← glcB | two‑component system response regulator/malate synthase G |
| RA | 432,995 | A→T | 5.4% | intergenic (+20/+27) | PP_0355 → / ← glcB | two‑component system response regulator/malate synthase G |
| RA | 499,203 | A→G | 100% | intergenic (+47/‑249) | uhpA → / → PP_0411 | two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein |
| RA | 699,722 | A→G | 46.6% | intergenic (+115/‑129) | PP_t06 → / → PP_23SD | tRNA‑Ala/23S ribosomal RNA |
| RA | 767,592 | A→T | 5.2% | N362Y (AAC→TAC) | metB → | cystathionine gamma‑synthase |
| RA | 863,380 | A→C | 14.6% | S172R (AGC→CGC) | hemH → | ferrochelatase |
| RA | 875,089 | C→T | 6.8% | A223V (GCC→GTC) | PP_0759 → | hypothetical protein |
| RA | 906,842 | T→G | 16.6% | L95R (CTT→CGT) | PP_0790 → | inner membrane protein AmpE |
| RA | 1,007,525 | C→G | 21.5% | intergenic (+25/+65) | PP_0867 → / ← yehX | FecA‑like outer membrane receptor/ABC transporter ATP‑binding protein |
| RA | 1,070,246:1 | +GA | 100% | intergenic (+46/+96) | aroP‑I → / ← PP_0928 | aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein |
| RA | 1,070,260 | G→C | 11.5% | intergenic (+60/+82) | aroP‑I → / ← PP_0928 | aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein |
| RA | 1,070,263 | G→C | 11.1% | intergenic (+63/+79) | aroP‑I → / ← PP_0928 | aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein |
| RA | 1,126,645:1 | +C | 100% | intergenic (‑99/+50) | tdcG‑II ← / ← gcvP‑I | L‑serine dehydratase/glycine dehydrogenase |
| RA | 1,195,641 | T→G | 17.6% | L44R (CTG→CGG) | xcpP → | type II secretion pathway protein XcpP |
| RA | 1,292,228 | G→A | 5.8% | G340D (GGT→GAT) | estC → | carboxylesterase |
| RA | 1,316,004 | C→T | 5.7% | A25V (GCC→GTC) | PP_1148 → | hypothetical protein |
| RA | 1,327,121 | C→T | 57.1% | intergenic (+97/‑196) | PP_16SE → / → PP_23SE | 16S ribosomal RNA/23S ribosomal RNA |
| RA | 1,350,995 | A→T | 6.1% | F264I (TTC→ATC) | nrdB ← | ribonucleoside‑diphosphate reductase subunit beta |
| RA | 1,370,775 | G→A | 12.8% | R524Q (CGG→CAG) | PP_1195 → | hypothetical protein |
| RA | 1,383,256 | T→G | 29.0% | A15A (GCA→GCC) | PP_1204 ← | lipoprotein |
| RA | 1,419,548:1 | +C | 100% | intergenic (‑37/+99) | PP_1242 ← / ← PP_1244 | hypothetical protein/hypothetical protein |
| RA | 1,423,048 | C→T | 5.3% | A543A (GCC→GCT) | PP_1246 → | hypothetical protein |
| RA | 1,499,480 | 2 bp→AC | 100% | intergenic (+57/‑106) | trpS → / → zapE | tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein |
| RA | 1,499,498 | 1 bp→CG | 100% | intergenic (+75/‑89) | trpS → / → zapE | tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein |
| RA | 1,499,506:1 | +C | 100% | intergenic (+83/‑81) | trpS → / → zapE | tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein |
| RA | 1,517,425 | C→A | 10.1% | L205L (CTC→CTA) | murE → | UDP‑N‑acetylmuramoyl‑L‑alanyl‑D‑glutamate‑‑2, 6‑diaminopimelate ligase |
| RA | 1,613,358 | G→A | 5.3% | A416A (GCC→GCT) | ushA ← | 5'‑nucleotidase/2',3'‑cyclic phosphodiesterase |
| RA | 1,625,023 | C→T | 5.7% | P102L (CCA→CTA) | PP_1425 → | hypothetical protein |
| RA | 1,625,208 | A→C | 14.4% | intergenic (+31/+26) | PP_1425 → / ← nadB | hypothetical protein/L‑aspartate oxidase |
| RA | 1,642,278 | C→G | 5.5% | intergenic (‑106/+46) | PP_1442 ← / ← lon‑I | hypothetical protein/DNA‑binding ATP‑dependent protease |
| RA | 1,842,575 | Δ2 bp | 100% | coding (2218‑2219/2754 nt) | gacS ← | sensor protein GacS |
| RA | 1,919,444 | G→A | 5.1% | A338V (GCG→GTG) | prc ← | tail‑specific protease Prc |
| RA | 1,932,638:1 | +C | 100% | intergenic (‑105/+45) | rluA ← / ← minE | bifunctional tRNA pseudouridine(32) synthase TrmQ/ribosomal large subunit pseudouridine synthase RluA/cell division topological specificity factor |
| RA | 1,993,604 | A→C | 7.2% | intergenic (+42/+56) | PP_1780 → / ← PP_1781 | mannosyltransferase/acyltransferase |
| RA | 2,017,246 | Δ1 bp | 100% | intergenic (‑854/‑1480) | PP_1795 ← / → PP_1797 | hypothetical protein/HlyD family secretion protein |
| RA | 2,101,751 | A→C | 22.5% | L186R (CTG→CGG) | PP_1878 ← | hypothetical protein |
| RA | 2,120,840 | C→G | 16.4% | S664* (TCA→TGA) | PP_1885 → | hypothetical protein |
| RA | 2,132,428 | Δ1 bp | 5.6% | coding (584/780 nt) | PP_1890 ← | type I pili chaperone protein FimC |
| RA | 2,294,024 | C→G | 15.1% | R7G (CGG→GGG) | PP_2020 → | lipoprotein |
| RA | 2,400,528 | T→G | 31.3% | intergenic (‑246/+29) | evgA ← / ← dgt | two‑component system response regulator/deoxyguanosinetriphosphate triphosphohydrolase‑like protein |
| RA | 2,400,538 | T→G | 28.8% | intergenic (‑256/+19) | evgA ← / ← dgt | two‑component system response regulator/deoxyguanosinetriphosphate triphosphohydrolase‑like protein |
| RA | 2,609,767 | T→A | 5.2% | L303Q (CTG→CAG) | PP_2286 → | hypothetical protein |
| RA | 2,863,829 | T→G | 29.8% | S297A (TCG→GCG) | gllR → | HTH‑type transcriptional regulator GalR |
| RA | 2,870,720 | C→T | 6.0% | intergenic (+27/‑503) | PP_2522 → / → PP_2524 | transposase/HD domain‑containing protein |
| RA | 2,911,820 | T→A | 5.3% | G280G (GGT→GGA) | PP_2561 → | hemolysin‑type calcium‑binding bacteriocin |
| RA | 2,922,289 | C→A | 5.2% | G107G (GGC→GGA) | PP_2562 → | hypothetical protein |
| RA | 2,949,801 | T→G | 21.2% | intergenic (+66/+47) | PP_2583 → / ← oguA | acetyltransferase/8‑oxoguanine deaminase |
| JC | 2,957,081 | Δ84 bp | 21.1% | intergenic (+36/‑77) | PP_2588 → / → PP_2589 | class III aminotransferase/aldehyde dehydrogenase family protein |
| RA | 2,958,523 | C→T | 100% | A428V (GCA→GTA) | PP_2589 → | aldehyde dehydrogenase family protein |
| JC | 2,958,780 | Δ61 bp | 24.9% | intergenic (+46/+36) | PP_2589 → / ← PP_2590 | aldehyde dehydrogenase family protein/ferric siderophore receptor |
| RA | 3,001,561 | C→G | 5.7% | D95E (GAC→GAG) | PP_2625 → | hypothetical protein |
| RA | 3,020,242 | G→C | 18.7% | Q260H (CAG→CAC) | PP_2638 → | cellulose synthase operon protein C |
| RA | 3,048,853 | A→G | 5.6% | N5D (AAT→GAT) | PP_2662 → | hypothetical protein |
| RA | 3,137,531 | C→T | 6.4% | R245W (CGG→TGG) | PP_2753 → | ABC transporter ATP‑binding protein |
| RA | 3,137,552 | T→C | 5.7% | Y252H (TAC→CAC) | PP_2753 → | ABC transporter ATP‑binding protein |
| RA | 3,152,302 | C→G | 20.9% | L153V (CTT→GTT) | PP_2768 → | branched‑chain amino acid ABC transporter permease |
| RA | 3,171,774 | A→T | 23.3% | I16F (ATT→TTT) | PP_2784 → | short‑chain dehydrogenase/reductase family oxidoreductase |
| RA | 3,174,964 | T→A | 5.1% | S89T (TCC→ACC) | PP_2787 → | transporter |
| RA | 3,182,290 | Δ1 bp | 5.6% | intergenic (+3/‑51) | PP_2792 → / → PP_2793 | hypothetical protein/acyl‑CoA dehydrogenase family protein |
| RA | 3,276,477 | A→T | 5.6% | R73R (CGT→CGA) | PP_2875 ← | hypothetical protein |
| RA | 3,323,603 | T→G | 33.3% | D97A (GAC→GCC) | PP_2923 ← | hypothetical protein |
| RA | 3,447,286 | A→C | 22.6% | S18R (AGC→CGC) | PP_5556 → | bacteriophage lysis protein |
| RA | 3,447,291 | T→G | 22.6% | A19A (GCT→GCG) | PP_5556 → | bacteriophage lysis protein |
| RA | 3,585,164 | A→G | 5.6% | E59E (GAA→GAG) | benD → | 1,6‑dihydroxycyclohexa‑2,4‑diene‑1‑carboxylate dehydrogenase |
| RA | 3,676,340 | C→T | 5.8% | intergenic (‑4/+5) | PP_5592 ← / ← PP_3241 | hypothetical protein/hypothetical protein |
| RA | 3,744,755 | G→A | 5.5% | R14H (CGC→CAC) | paoC → | aromatic aldehyde dehydrogenase molybdopterin‑binding subunit |
| RA | 3,845,703:1 | +G | 100% | intergenic (‑70/+28) | PP_3394 ← / ← PP_3395 | 3‑hydroxy‑3‑methylglutaryl‑CoA lyase/LysR family transcriptional regulator |
| RA | 3,865,015 | C→T | 5.2% | S210S (TCG→TCA) | PP_3414 ← | methyl‑accepting chemotaxis transducer/sensory box protein |
| RA | 3,951,159 | T→C | 100% | intergenic (‑123/+72) | PP_3486 ← / ← PP_3487 | cytochrome c/hypothetical protein |
| RA | 3,951,161 | A→T | 100% | intergenic (‑125/+70) | PP_3486 ← / ← PP_3487 | cytochrome c/hypothetical protein |
| RA | 4,001,773 | T→G | 17.1% | intergenic (+90/‑44) | dmoA‑II → / → allE | dimethyl‑sulfide monooxygenase/S‑ureidoglycine aminohydrolase |
| RA | 4,141,962 | A→C | 13.8% | Q32P (CAG→CCG) | PP_3646 → | aldehyde dehydrogenase family protein |
| RA | 4,158,466 | T→G | 50.2% | L159R (CTG→CGG) | PP_3661 → | membrane protein |
| RA | 4,158,471 | A→C | 38.8% | S161R (AGC→CGC) | PP_3661 → | membrane protein |
| RA | 4,170,180 | T→G | 50.3% | intergenic (‑288/‑99) | katG ← / → PP_3669 | catalase‑peroxidase/LysR family transcriptional regulator |
| MC JC | 4,274,119 | 32 bp→45 bp | 100% | intergenic (‑243/‑1) | glcC ← / → glcD | transcriptional regulator GlcC/glycolate oxidase FAD‑linked subunit |
| RA | 4,348,812 | A→G | 50.4% | intergenic (‑70/+404) | PP_3820 ← / ← galU | group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase |
| RA | 4,442,726 | A→C | 28.4% | intergenic (‑89/+49) | nicP‑II ← / ← nicT | porin‑like protein/metabolite transport protein NicT |
| RA | 4,513,179 | C→T | 6.0% | A640A (GCG→GCA) | ftsK ← | DNA translocase FtsK |
| RA | 4,586,137 | 2 bp→TC | 100% | intergenic (+113/+101) | PP_4061 → / ← PP_4063 | hypothetical protein/long‑chain fatty acid‑‑CoA ligase |
| RA | 4,586,140:1 | +G | 100% | intergenic (+116/+99) | PP_4061 → / ← PP_4063 | hypothetical protein/long‑chain fatty acid‑‑CoA ligase |
| RA | 4,586,163:1 | +C | 100% | intergenic (+139/+76) | PP_4061 → / ← PP_4063 | hypothetical protein/long‑chain fatty acid‑‑CoA ligase |
| RA | 4,632,605 | G→T | 5.9% | intergenic (+103/+56) | PP_4096 → / ← PP_t59 | hypothetical protein/tRNA‑Gly |
| RA | 4,638,749 | G→A | 5.6% | G453D (GGC→GAC) | PP_4103 → | low‑affinity inorganic phosphate transporter |
| RA | 4,740,912 | Δ1 bp | 100% | intergenic (+42/+711) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,740,923 | T→G | 100% | intergenic (+53/+700) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,740,926 | 2 bp→CT | 100% | intergenic (+56/+696) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,336 | A→C | 100% | intergenic (+466/+287) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,338 | C→G | 100% | intergenic (+468/+285) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,341 | C→T | 100% | intergenic (+471/+282) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,343 | 2 bp→TG | 100% | intergenic (+473/+279) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,346 | A→G | 100% | intergenic (+476/+277) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,350 | 3 bp→TGC | 100% | intergenic (+480/+271) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,362 | C→T | 100% | intergenic (+492/+261) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,364 | A→C | 100% | intergenic (+494/+259) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,367 | 2 bp→GC | 100% | intergenic (+497/+255) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,370 | A→C | 100% | intergenic (+500/+253) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,379 | A→G | 100% | intergenic (+509/+244) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,381 | A→C | 100% | intergenic (+511/+242) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,383 | G→C | 100% | intergenic (+513/+240) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,385 | C→T | 100% | intergenic (+515/+238) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,390:1 | +T | 100% | intergenic (+520/+233) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,396 | C→G | 100% | intergenic (+526/+227) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,399 | C→T | 100% | intergenic (+529/+224) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,401 | C→G | 100% | intergenic (+531/+222) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,403 | A→C | 100% | intergenic (+533/+220) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,405 | C→T | 100% | intergenic (+535/+218) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,767,982 | A→T | 100% | intergenic (+89/‑93) | fpvA → / → tpaK | TonB‑dependent outer membrane ferripyoverdine receptor FpvA/probable terephthalate transporter, MFS superfamily protein |
| RA | 4,767,984 | T→G | 100% | intergenic (+91/‑91) | fpvA → / → tpaK | TonB‑dependent outer membrane ferripyoverdine receptor FpvA/probable terephthalate transporter, MFS superfamily protein |
| RA | 4,768,005 | T→A | 100% | intergenic (+112/‑70) | fpvA → / → tpaK | TonB‑dependent outer membrane ferripyoverdine receptor FpvA/probable terephthalate transporter, MFS superfamily protein |
| RA | 4,809,883 | A→C | 16.7% | intergenic (‑289/‑266) | PP_4234 ← / → dsbD‑II | bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| RA | 4,809,884 | A→G | 17.3% | intergenic (‑290/‑265) | PP_4234 ← / → dsbD‑II | bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| MC JC | 4,875,480 | Δ756 bp | 100% | coding (1‑756/756 nt) | PP_4283 ← | GntR family transcriptional regulator |
| RA | 4,935,572 | A→C | 20.2% | W194G (TGG→GGG) | flhF ← | flagellar biosynthesis protein FlhF |
| JC | 4,982,288 | +GGC | 100% | intergenic (‑24/+44) | PP_4387 ← / ← flgE | hypothetical protein/flagellar hook protein FlgE |
| RA | 5,173,077 | G→A | 32.2% | P529L (CCG→CTG) | fadD‑I ← | long‑chain‑fatty acid‑‑CoA ligase |
| RA | 5,301,104 | A→C | 21.7% | L234R (CTG→CGG) | recD ← | multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease |
| RA | 5,339,738 | G→T | 17.3% | intergenic (+42/‑242) | PP_4696 → / → PP_mr53 | nitrogen regulation protein NR(I)/CrcZ ncRNA |
| RA | 5,396,064 | A→G | 100% | V231A (GTA→GCA) | tphBII ← | 4‑hydroxythreonine‑4‑phosphate dehydrogenase |
| RA | 5,462,375 | T→G | 27.1% | intergenic (+18/‑22) | PP_4795 → / → holA | lipoprotein/DNA polymerase III subunit delta |
| RA | 5,504,224 | C→G | 15.6% | intergenic (+20/‑199) | PP_4834 → / → PP_4835 | SPFH domain‑containing protein/hypothetical protein |
| RA | 5,512,711 | A→C | 36.4% | Q32P (CAG→CCG) | urtB → | urea ABC transporter permease |
| RA | 5,512,720 | T→G | 25.6% | L35R (CTG→CGG) | urtB → | urea ABC transporter permease |
| RA | 5,512,723 | T→G | 23.7% | L36R (CTC→CGC) | urtB → | urea ABC transporter permease |
| RA | 5,558,315 | C→T | 6.4% | A9T (GCT→ACT) | PP_4887 ← | hypothetical protein |
| JC | 5,558,423 | +GCC | 87.7% | intergenic (‑84/+87) | PP_4887 ← / ← PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer |
| RA | 5,658,451 | C→A | 16.6% | intergenic (‑91/+61) | epd ← / ← tktA | D‑erythrose 4‑phosphate dehydrogenase/transketolase A |
| RA | 5,677,565:1 | +G | 100% | intergenic (+112/+28) | rhlE‑II → / ← yceI | ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor |
| RA | 5,677,568 | G→C | 100% | intergenic (+115/+25) | rhlE‑II → / ← yceI | ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor |
| JC | 5,684,230 | +CGGG | 87.0% | intergenic (‑133/+71) | PP_4986 ← / ← PP_4987 | hemolysin III family channel protein/putative Chemotaxis protein |
| RA | 5,754,540 | A→G | 11.1% | intergenic (‑163/‑308) | thiI ← / → glnA | tRNA sulfurtransferase/glutamine synthetase |
| RA | 5,879,868 | G→T | 19.2% | intergenic (+75/+30) | rpiA → / ← PP_5151 | ribose‑5‑phosphate isomerase A/hypothetical protein |
| RA | 6,016,700 | T→C | 100% | intergenic (+90/+20) | xpt → / ← PP_5266 | xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein |
| RA | 6,067,392 | A→C | 19.9% | intergenic (+18/+16) | ubiA → / ← PP_5319 | 4‑hydroxybenzoate octaprenyltransferase/hypothetical protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_002947_CJ‑RC | 5399433 | 5427901 | 28469 | 46 [5] | [6] 61 | [hsdM]–[PP_4764] | [hsdM],hsdS,PP_5711,PP_4743,PP_4745,PP_4746,PP_4748,PP_4749,PP_4750,PP_4751,PP_4752,stcD,PP_4754,PP_4755,gabP‑V,gudD,PP_4758,PP_4759,PP_4760,PP_4761,tesB,PP_4763,PP_5712,[PP_4764] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947_CJ‑RC | = 401301 | NA (NA) | 7 (0.090) | 6/258 | NT | 10.3% | coding (887/1059 nt) | PP_0334 | transposase |
| ? | NC_002947_CJ‑RC | 401364 = | 64 (0.800) | coding (950/1059 nt) | PP_0334 | transposase | |||||
| * | ? | NC_002947_CJ‑RC | = 697775 | 0 (0.000) | 3 (0.040) | 3/256 | NT | 100% | intergenic (+702/‑49) | mmsA‑I/PP_16SD | methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA |
| ? | NC_002947_CJ‑RC | = 2548693 | NA (NA) | noncoding (4/1522 nt) | PP_16SF | 16S ribosomal RNA | |||||
| * | ? | NC_002947_CJ‑RC | 796825 = | 19 (0.240) | 3 (0.040) | 3/240 | NT | 16.3% | intergenic (+27/‑163) | PP_0681/PP_0682 | hypothetical protein/inner membrane protein |
| ? | NC_002947_CJ‑RC | 796895 = | 14 (0.200) | intergenic (+97/‑93) | PP_0681/PP_0682 | hypothetical protein/inner membrane protein | |||||
| * | ? | NC_002947_CJ‑RC | = 1250129 | 78 (0.970) | 4 (0.050) | 4/254 | NT | 5.3% | coding (589/639 nt) | nth | DNA glycosylase/apyrimidinic (AP) lyase |
| ? | NC_002947_CJ‑RC | = 1250172 | 70 (0.930) | coding (546/639 nt) | nth | DNA glycosylase/apyrimidinic (AP) lyase | |||||
| * | ? | NC_002947_CJ‑RC | = 2472115 | 30 (0.370) | 4 (0.050) | 4/258 | NT | 7.8% | intergenic (+19/+130) | PP_2166/PP_2167 | anti‑anti‑sigma factor/PhoD‑like phosphatase |
| ? | NC_002947_CJ‑RC | 2472313 = | 66 (0.870) | coding (1783/1851 nt) | PP_2167 | PhoD‑like phosphatase | |||||
| * | ? | NC_002947_CJ‑RC | = 4150041 | 9 (0.110) | 3 (0.040) | 3/236 | NT | 28.8% | intergenic (+40/‑357) | PP_3654/PP_3655 | leucine‑responsive regulatory protein/cytosine/purine/uracil/thiamine/allantoin permease family protein |
| ? | NC_002947_CJ‑RC | = 4150072 | 7 (0.100) | intergenic (+71/‑326) | PP_3654/PP_3655 | leucine‑responsive regulatory protein/cytosine/purine/uracil/thiamine/allantoin permease family protein | |||||
| * | ? | NC_002947_CJ‑RC | = 4647702 | 12 (0.150) | 4 (0.070) | 3/194 | NT | 20.2% | intergenic (+48/+83) | fusB/PP_4112 | elongation factor G 2/sulfate transporter |
| ? | NC_002947_CJ‑RC | = 4647732 | 23 (0.400) | intergenic (+78/+53) | fusB/PP_4112 | elongation factor G 2/sulfate transporter | |||||
| * | ? | NC_002947_CJ‑RC | 4809877 = | 7 (0.090) | 14 (0.230) | 10/202 | NT | 41.1% | intergenic (‑283/‑272) | PP_4234/dsbD‑II | bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| ? | NC_002947_CJ‑RC | = 5991750 | 35 (0.590) | intergenic (+229/‑317) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA | |||||
| * | ? | NC_002947_CJ‑RC | = 5240364 | 33 (0.410) | 3 (0.040) | 3/254 | NT | 8.6% | coding (173/204 nt) | PP_5701 | hypothetical protein |
| ? | NC_002947_CJ‑RC | = 5240429 | 33 (0.440) | intergenic (+34/‑247) | PP_5701/PP_4616 | hypothetical protein/hypothetical protein | |||||
| * | ? | NC_002947_CJ‑RC | = 5399429 | 3 (0.040) | 47 (0.590) | 44/270 | NT | 91.3% | coding (840/1218 nt) | hsdM | type I restriction modification system methylase |
| ? | NC_002947_CJ‑RC | 5427902 = | 6 (0.080) | coding (686/915 nt) | PP_4764 | histone deacetylase family protein | |||||
| * | ? | NC_002947_CJ‑RC | = 5399432 | 3 (0.040) | 39 (0.490) | 38/272 | NT | 89.7% | coding (843/1218 nt) | hsdM | type I restriction modification system methylase |
| ? | NC_002947_CJ‑RC | 5427905 = | 6 (0.070) | coding (689/915 nt) | PP_4764 | histone deacetylase family protein | |||||
| * | ? | NC_002947_CJ‑RC | = 5399487 | 0 (0.000) | 5 (0.060) | 5/270 | NT | 100% | coding (898/1218 nt) | hsdM | type I restriction modification system methylase |
| ? | NC_002947_CJ‑RC | 5420953 = | 0 (0.000) | coding (933/1368 nt) | PP_4758 | MFS transporter | |||||
| * | ? | NC_002947_CJ‑RC | 5701542 = | 21 (0.260) | 3 (0.040) | 3/238 | NT | 13.8% | intergenic (+17/‑150) | hslU/PP_5002 | protease HslVU ATPase subunit/hypothetical protein |
| ? | NC_002947_CJ‑RC | 5701625 = | 19 (0.270) | intergenic (+100/‑67) | hslU/PP_5002 | protease HslVU ATPase subunit/hypothetical protein | |||||
| * | ? | NC_002947_CJ‑RC | 5879799 = | 10 (0.120) | 4 (0.060) | 4/224 | NT | 28.3% | intergenic (+6/+99) | rpiA/PP_5151 | ribose‑5‑phosphate isomerase A/hypothetical protein |
| ? | NC_002947_CJ‑RC | 5879881 = | 12 (0.180) | intergenic (+88/+17) | rpiA/PP_5151 | ribose‑5‑phosphate isomerase A/hypothetical protein | |||||
| * | ? | NC_002947_CJ‑RC | = 5879822 | 12 (0.150) | 3 (0.050) | 3/224 | NT | 21.5% | intergenic (+29/+76) | rpiA/PP_5151 | ribose‑5‑phosphate isomerase A/hypothetical protein |
| ? | NC_002947_CJ‑RC | = 5879856 | 12 (0.180) | intergenic (+63/+42) | rpiA/PP_5151 | ribose‑5‑phosphate isomerase A/hypothetical protein | |||||
| * | ? | NC_002947_CJ‑RC | = 5991586 | 40 (0.500) | 8 (0.110) | 7/256 | NT | 14.5% | intergenic (+65/‑481) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| ? | NC_002947_CJ‑RC | 5991778 = | 57 (0.750) | intergenic (+257/‑289) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA | |||||
| * | ? | NC_002947_CJ‑RC | = 6003747 | 12 (0.150) | 3 (0.050) | 3/212 | NT | 16.5% | intergenic (+39/+70) | PP_5256/amaA | cyclic nucleotide‑binding protein/L‑pipecolate oxidase |
| ? | NC_002947_CJ‑RC | = 6003781 | 21 (0.340) | intergenic (+73/+36) | PP_5256/amaA | cyclic nucleotide‑binding protein/L‑pipecolate oxidase | |||||