mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 17 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947_CJ‑RC | = 6097322 | 90 (1.120) | 3 (0.040) | 3/262 | NT | 3.2% | coding (764/1809 nt) | pycB | pyruvate carboxylase subunit B |
| ? | NC_002947_CJ‑RC | = 6097349 | 97 (1.250) | coding (737/1809 nt) | pycB | pyruvate carboxylase subunit B | |||||
| * | ? | NC_002947_CJ‑RC | = 5832563 | 82 (1.020) | 3 (0.040) | 3/266 | NT | 3.7% | coding (241/1026 nt) | ftsX | cell division protein FtsX |
| ? | NC_002947_CJ‑RC | = 5832618 | 75 (0.950) | coding (186/1026 nt) | ftsX | cell division protein FtsX | |||||
| * | ? | NC_002947_CJ‑RC | = 5618573 | 80 (1.000) | 4 (0.050) | 4/260 | NT | 4.3% | coding (1703/1809 nt) | msbA | lipid A export ATP‑binding/permease MsbA |
| ? | NC_002947_CJ‑RC | = 5618674 | 100 (1.300) | coding (1602/1809 nt) | msbA | lipid A export ATP‑binding/permease MsbA | |||||
| * | ? | NC_002947_CJ‑RC | 5139447 = | 86 (1.070) | 3 (0.040) | 3/260 | NT | 3.6% | intergenic (‑143/‑70) | PP_4522/PP_4523 | LysR family transcriptional regulator/agmatinase |
| ? | NC_002947_CJ‑RC | 5139482 = | 77 (1.000) | intergenic (‑178/‑35) | PP_4522/PP_4523 | LysR family transcriptional regulator/agmatinase | |||||
| * | ? | NC_002947_CJ‑RC | = 4707333 | 84 (1.050) | 3 (0.040) | 3/258 | NT | 3.3% | coding (73/795 nt) | PP_4163 | hypothetical protein |
| ? | NC_002947_CJ‑RC | = 4707366 | 94 (1.230) | coding (40/795 nt) | PP_4163 | hypothetical protein | |||||
| * | ? | NC_002947_CJ‑RC | = 4590606 | 65 (0.810) | 3 (0.040) | 3/266 | NT | 4.3% | coding (1181/1608 nt) | mccB | methylcrotonyl‑CoA carboxylase biotin‑containing subunit beta |
| ? | NC_002947_CJ‑RC | = 4590680 | 70 (0.890) | coding (1255/1608 nt) | mccB | methylcrotonyl‑CoA carboxylase biotin‑containing subunit beta | |||||
| * | ? | NC_002947_CJ‑RC | 4344588 = | 78 (0.970) | 3 (0.040) | 3/258 | NT | 4.2% | coding (57/1308 nt) | PP_3818 | phosphate‑binding protein |
| ? | NC_002947_CJ‑RC | 4344659 = | 62 (0.810) | coding (128/1308 nt) | PP_3818 | phosphate‑binding protein | |||||
| * | ? | NC_002947_CJ‑RC | = 3634585 | 70 (0.870) | 3 (0.040) | 3/272 | NT | 4.0% | coding (983/2481 nt) | PP_3202 | transporter |
| ? | NC_002947_CJ‑RC | = 3634639 | 74 (0.920) | coding (1037/2481 nt) | PP_3202 | transporter | |||||
| * | ? | NC_002947_CJ‑RC | = 3542571 | 72 (0.900) | 3 (0.040) | 3/256 | NT | 4.1% | coding (152/966 nt) | galE | UDP‑glucose 4‑epimerase |
| ? | NC_002947_CJ‑RC | = 3542600 | 72 (0.950) | coding (123/966 nt) | galE | UDP‑glucose 4‑epimerase | |||||
| * | ? | NC_002947_CJ‑RC | = 3085042 | 76 (0.950) | 3 (0.040) | 3/254 | NT | 3.8% | coding (68/987 nt) | PP_2693 | putative Dipeptidase |
| ? | NC_002947_CJ‑RC | = 3085077 | 80 (1.070) | coding (33/987 nt) | PP_2693 | putative Dipeptidase | |||||