mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 11 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947_CJ‑RC | = 6090387 | 59 (0.800) | 3 (0.040) | 3/254 | NT | 5.0% | intergenic (+23/‑207) | oruR/aphA | ornithine utilization transcriptional regulator/acetylpolyamine aminohydrolase |
| ? | NC_002947_CJ‑RC | = 6090451 | 60 (0.870) | intergenic (+87/‑143) | oruR/aphA | ornithine utilization transcriptional regulator/acetylpolyamine aminohydrolase | |||||
| * | ? | NC_002947_CJ‑RC | 5600306 = | 72 (0.980) | 3 (0.040) | 3/266 | NT | 4.0% | coding (992/1434 nt) | PP_4923 | outer membrane efflux protein |
| ? | NC_002947_CJ‑RC | 5600331 = | 73 (1.010) | coding (1017/1434 nt) | PP_4923 | outer membrane efflux protein | |||||
| * | ? | NC_002947_CJ‑RC | 5574219 = | 59 (0.800) | 3 (0.040) | 3/268 | NT | 4.8% | intergenic (+26/+115) | queG/yicG | epoxyqueuosine reductase/inner membrane protein |
| ? | NC_002947_CJ‑RC | 5574310 = | 60 (0.830) | intergenic (+117/+24) | queG/yicG | epoxyqueuosine reductase/inner membrane protein | |||||
| * | ? | NC_002947_CJ‑RC | 5448203 = | 91 (1.230) | 3 (0.040) | 3/260 | NT | 3.4% | coding (344/798 nt) | thiD | phosphomethylpyrimidine kinase |
| ? | NC_002947_CJ‑RC | 5448282 = | 85 (1.210) | coding (423/798 nt) | thiD | phosphomethylpyrimidine kinase | |||||
| * | ? | NC_002947_CJ‑RC | 3642257 = | 67 (0.910) | 3 (0.040) | 3/264 | NT | 4.6% | coding (948/1431 nt) | PP_3209 | isoxanthopterin deaminase |
| ? | NC_002947_CJ‑RC | 3642302 = | 59 (0.820) | coding (903/1431 nt) | PP_3209 | isoxanthopterin deaminase | |||||
| * | ? | NC_002947_CJ‑RC | 3240954 = | 79 (1.070) | 3 (0.040) | 3/260 | NT | 4.1% | coding (650/1650 nt) | PP_2838 | hypothetical protein |
| ? | NC_002947_CJ‑RC | 3241046 = | 64 (0.910) | coding (742/1650 nt) | PP_2838 | hypothetical protein | |||||
| * | ? | NC_002947_CJ‑RC | = 1042930 | 78 (1.060) | 3 (0.040) | 3/256 | NT | 3.9% | coding (740/1311 nt) | colS | integral membrane sensor signal transduction histidine kinase |
| ? | NC_002947_CJ‑RC | = 1042952 | 73 (1.050) | coding (762/1311 nt) | colS | integral membrane sensor signal transduction histidine kinase | |||||
| * | ? | NC_002947_CJ‑RC | 736638 = | 87 (1.180) | 3 (0.040) | 3/264 | NT | 3.3% | coding (186/432 nt) | PP_5447 | membrane protein |
| ? | NC_002947_CJ‑RC | 736696 = | 91 (1.270) | coding (128/432 nt) | PP_5447 | membrane protein | |||||
| * | ? | NC_002947_CJ‑RC | 604507 = | 82 (1.110) | 3 (0.040) | 3/270 | NT | 3.5% | coding (339/501 nt) | nusB | transcription antitermination protein |
| ? | NC_002947_CJ‑RC | 604550 = | 84 (1.150) | coding (382/501 nt) | nusB | transcription antitermination protein | |||||
| * | ? | NC_002947_CJ‑RC | = 588316 | 90 (1.220) | 3 (0.040) | 3/270 | NT | 2.9% | coding (330/876 nt) | PP_0498 | hypothetical protein |
| ? | NC_002947_CJ‑RC | = 588357 | 111 (1.520) | coding (289/876 nt) | PP_0498 | hypothetical protein | |||||