New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002745	607597 =	173 (0.640)	8 (0.030) +GCTGTCTGAGTCTGAG	6/432	10.1	3.8%	coding (2383/2862 nt)	sdrC	MSCRAMM family adhesin SdrC
	?	NC_002745	= 607832	265 (0.980)					coding (2618/2862 nt)	sdrC	MSCRAMM family adhesin SdrC
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATCTGAGTCGCTGTCTGAATCTGAATCGCTATCTGAATCTGAATCGCTGTCTGAATCTGAGTCGCTGTCTGAATCTGAGTCGCTATCTGAGTCTGAATCGCTGTCAGAATCTGAGTCGTTGTCTGAGTCCGAATCGCTATCTGAATCTGAGTCGCTATCCGAATCTGAATCGCTGTCTGAATCTGAGTCGCTGTCTGAGTCTGAGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002745/607803‑607597 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TCGCTGTCTGAGTCTGAGTCGCTATCTGAATCTGAGTCGCTGTCTGAATCTGAATCGCTATCTGAATCTGAATCGCTGTCTGAATCTGAGTCGCTGTCTGAATCTGAGTCGCTATCTGAGTCTGAATCGCTGTCAGAATCTGAGTCGTTGTCTGAGTCCGAATCGCTATCTGAATCTGAGTCGCTATCCGAATCTGAATCGCTGTCTGAATCTGAG  <  NC_002745/607832‑607617                                                                                                                                                                                                                ||||||||||||||||                                                                                                                                                                                                                         ATCTGAGTCGCTGTCTGAATCTGAATCGCTATCTGAATCTGAATCGCTGTCTGAATCTGAGTCGCTGTCTGAATCTGAGTCGCTATCTGAGTCTGAATCGCTGTCTGAATCTGAGTCGGTGTCTGAGTCTGAATCGCTATCCGAATCTGAATCGCGATCCGAATCTGTATCGGCGTCTGAATCGGAGTCGCAGTCTGAGTCTGAGTCGCAGTCCGAGTCGGAGTCGCAGACTGA                                                                                                                                                                                                               >  2:571424/1‑234         CGCTGTCTGAATCTGAATCGCTATCTGAATCTGAATCGCTGTCTGAATCTGAGTCGCTGTCTGAATCTGAGTCGCTATCTGAGTCTGAATCGCTGTCTGAATCTGAGTCGTTGTCTGAGTCTGAATCTCTGTCTGAATCTGAGTCTCTATCTGATTCTGAATCGCTGTCTGAATCTGAGTCTCTGTCTGATTCTGAGTCTCTGTCTGAGTCTGTGTCGCTGTCTGAGTCTctct                                                                                                                                                                                                       >  1:1268530/1‑230                                                                                                                                                                          tctCTGACTGAATCTGAGTCACTCTCTGAGTCTGAGTCACTCTCTGAATCTGAGTCGCTATCTGAGTCTGGATCGCTGTCTGAATCAGAATCACTGTCTGAATCTGAGTCGCTATCTGAATCTGAATCGCTGTCTGAATCTGAGTCGCTATCTGAATCTGAGTCGCTATCTGAGTCTGAATCGCTGTCAGAATCTGAGTCGTTGTCTGAGTCCAAATCGCTATCTGAATCTGAG                                      <  1:1441600/231‑1                                                                                                                                                                                             CGCTGTCTGAGTCTGAGTCGCTGTCTGAGTCTGAGTCGCTGTCTGAGTCTGAa                                                                                                                                                                                                        >  2:1409834/1‑52                                                                                                                                                                                              gctagCTGGGTCTGAGTAGCTGTGTGAGTCGGAGTCGCTGTCTGAGTCGGAATCGCTATCTGAATCTGAGTCGCTGTCTGAATCTGAGGCGCTATCTGAGTCTGAATCGCTGTCTGAGTCTGAGTCGCTGTCTGAATCTGAATCGCTATCTGAGTCTGAATCGCTGTCAGAATCTGAGTCGTTGTCTGAGTCCGAATCGCTATCTGAATCTGAGTCGCTATCCGAATCTGAATC                  <  1:793811/229‑1                                                                                                                                                                                                          TGAGGCGGTGTCTGAGACAGACACGCTGTCTGAGTCTGAGTCGCTGTCTGAGTCTGAGTCGCTGTCTGAGTCTGAGTCGCTGTCTGAATCTGAGTCGCTGTCTGAGTCTGAGTCGCTGTCTGAATCTGAGTCGCTATCTGAGTCTGAGTCGCTGTCTGAATCTGAGTCGCTGTCTGAGTCCGAATCGCTATCTGAATCTGAGTCGCTATCCGAATCTGAATCGCTGTCTGAATC      <  1:563662/234‑1                                                                                                                                                                                                              TCGCTGTCTGAGTCTGAGTCGCTGTCTGAGTCTGATTCGCTGTCTGAGTCTGGGTCGCTGTCTGAATCTGAATCGCTATCTGGATCTGAGTCGCTGTCTGAGTCTGAGTCGCTGTCTGAATCTGAATCGCTATCTGAGTCTGAATCGCTGTCAGAATCTGAGTCGTTGTCTGAGTCCGAATCGCTATCTGAATCTGAGTCGCTATCCGAATCTGAATCGCTGTCTGAATCTGAG  <  1:1021704/234‑1                                                                                                                                                                                                              TCGCTCTCTGACTCTGAGTCGCTCTCTGTGTCTGTGTCTCTATCTGTATCTGAGTCGCTTTCTGTCTCTGAATCGCTATCTGAGTCTGTATCGCTATCTGTATCTGAGTCTCTATCTGTATCTGAGTCGCTATCTGAGTCTGAATCGCTGTCTGAATCTGAGTCGTTGTCTGAGTCCGAATCGCTATCTGAATCTGAATCGCTATCTGAGTCTGAATCACTGTCTGAATCTGAG  <  1:1359517/234‑1                                                                                                                                                                                                                ||||||||||||||||                                                                                                                                                                                                                         ATCTGAGTCGCTGTCTGAATCTGAATCGCTATCTGAATCTGAATCGCTGTCTGAATCTGAGTCGCTGTCTGAATCTGAGTCGCTATCTGAGTCTGAATCGCTGTCAGAATCTGAGTCGTTGTCTGAGTCCGAATCGCTATCTGAATCTGAGTCGCTATCCGAATCTGAATCGCTGTCTGAATCTGAGTCGCTGTCTGAGTCTGAGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002745/607803‑607597 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TCGCTGTCTGAGTCTGAGTCGCTATCTGAATCTGAGTCGCTGTCTGAATCTGAATCGCTATCTGAATCTGAATCGCTGTCTGAATCTGAGTCGCTGTCTGAATCTGAGTCGCTATCTGAGTCTGAATCGCTGTCAGAATCTGAGTCGTTGTCTGAGTCCGAATCGCTATCTGAATCTGAGTCGCTATCCGAATCTGAATCGCTGTCTGAATCTGAG  <  NC_002745/607832‑607617

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.