New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002745	777410 =	304 (1.130)	16 (0.060)	9/464	9.2	4.5%	intergenic (+399/+480)	SA_RS03870/SA_RS03880	5'‑3'‑deoxyribonucleotidase/diacylglycerol kinase family lipid kinase
	?	NC_002745	= 2526748	379 (1.400)					intergenic (+228/+134)	SA_RS12920/SA_RS12925	CPBP family intramembrane metalloprotease/MFS transporter
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTATAATAATGAGATAGACTAACATTTATTGAGAGCGGGACGGAAATGATAAAGAACGACTAATGATTGATTATGTAGCGATTCTTTATCATTAGTCAAAGCTAATGTGTACTTAAAAATAGGAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTGTGTTGGGGCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002745/777639‑777410 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTT  <  NC_002745/2526748‑2526681                                                                                                                                                                                                                                                                                                            TTATAATAATGAGATAGACTAACATTTATTGAGAGCGGGACGGAAATGATAAAGAACGACTAATGATTGATTATGTAGCGATTCTTTATCATTAGTCAAAGCTAATGTGTACTTAAAAATAGGAGGGAGTGGGACAGAAATGATATTTTCTCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAG‑AATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACT                                                                 >  1:253103/1‑234   ATAATAATGAGATAGACTAACATTTATTGAGAGCGGGACGGAAATGATAAAGAACGACTAATGATTGATTATGTAGCGATTCTTTATCATTAGTCAAAGCTAATGTGTACTTAAAAATAGGAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTGTGTTGGGGCCCCTGACTA                                                                >  1:753154/1‑234         ATGAGATAGACTAACATTTATTGAGAGCGGGACGGAAATGATAAAGAACGACTAATGATTGATTATGTAGCGATTCTTTATCATTAGTCAAAGCTAATGTGTACTTAAAAATAGGAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAG‑AATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGA                                                         <  1:38380/234‑1            AGATAGACTAACATTTATTGAGAGCGGGACGGAAATGATAAAGAACGACTAATGATTGATTATGTAGCGATTCTTTATCATTAGTCAAAGCTAATGTGTACTTAAAAATAGGAGGGAGTGGGACAGAAATGATATTTTCTCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAG‑AATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAA                                                      >  2:373133/1‑234                                        ACGGAAATGATAAAGAACGACTAATGATTGATTATGTAGCGATTCTTTATCATTAGTCAAAGCTAATGTGTACTTAAAAATAGGAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTC                           <  2:753154/234‑1                                                    AAGAACGACTAATGATTGATTATGTAGCGATTCTTTATCATTAGTCAAAGCTAATGTGTACTTAAAAATAGGAGGGAGTGGGACAGAAATGATATTTTCTCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAG‑AATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGC              >  2:673953/1‑234                                                       AACGACTAATGATTGATTATGTAGCGATTCTTTATCATTAGTCAAAGCTAATGTGTACTTAAAAATAGGAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCA            <  1:1328476/234‑1                                                                TGATTGATTATGTAGCGATTCTTTATCATTAGTCAAAGCTAATGTGTACTTAAAAATAGGAGGGAGTGGGACAGAAATGATATTTTCTCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAG‑AATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTT  <  1:373133/234‑1                                                                TGATTGATTATGTAGCGATTCTTTATCATTAGTCAAAGCTAATGTGTACTTAAAAATAGGAGGGAGTGGGACAGAAATGATATTTTCTCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAG‑AATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTT  <  1:673953/234‑1                                                                TGATTGATTATGTAGCGATTCTTTATCATTAGTCAAAGCTAATGTGTACTTAAAAATAGGAGGGAGTGGGACAGAAATGATATTTTCTCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAG‑AATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTT  <  2:253103/234‑1                                                                    TGATTATGTAGCGATTCTTTATCATTAGTCAAAGCTAATGTGTACTTAAAAATAGGAGGGAGTGGGACAGAAATGATATTTTCTCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAG‑AATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTT  <  1:270050/230‑1                                                                    TGATTATGTAGCGATTCTTTATCATTAGTCAAAGCTAATGTGTACTTAAAAATAGGAGGGAGTGGGACAGAAATGATATTTTCTCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAG‑AATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTT  >  2:270050/1‑230                                                                    TGATTATGTAGCGATTCTTTATCATTAGTCAAAGCTAATGTGTACTTAAAAATAGGAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTT  <  1:1241256/231‑1                                                                    TGATTATGTAGCGATTCTTTATCATTAGTCAAAGCTAATGTGTACTTAAAAATAGGAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTT  >  2:1241256/1‑231                                                                    TGATTATGTAGCGATTCTTTATCATTAGTCAAAGCTAATGTGTACTTAAAAATAGGAGGGAGTGGGACAGAAACGATATTTTCTCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAG‑AATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTT  <  1:976276/230‑1                                                                    TGATTATGTAGCGATTCTTTATCATTAGTCAAAGCTAATGTGTACTTAAAAATAGGAGGGAGTGGGACAGAAACGATATTTTCTCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAG‑AATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTT  >  2:976276/1‑230                                                                                                                                                                                                                                                                                                            TTATAATAATGAGATAGACTAACATTTATTGAGAGCGGGACGGAAATGATAAAGAACGACTAATGATTGATTATGTAGCGATTCTTTATCATTAGTCAAAGCTAATGTGTACTTAAAAATAGGAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTGTGTTGGGGCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002745/777639‑777410 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTT  <  NC_002745/2526748‑2526681

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.