New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 3385461293 (1.010)6 (0.030) 4/210 NT 2.7% noncoding (27/308 nt) REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences
?CP009273 3385736 = 218 (0.990)noncoding (302/308 nt) REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences
Rejected: Frequency below/above cutoff threshold.

Only 100 of 379 total aligned reads displayed.

GAGGATCGCGAACAAGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGG  >  CP009273/3385313‑3385609
                                                                                                                                                    |                                                                                                                                                    
    aTCGCGAACAAGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGcc                                                                                                                                                  >  1:4414526/1‑149 (MQ=255)
      cgcgAACAAGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTa                                                                                                                                                <  2:4351616/149‑1 (MQ=255)
      cgcgAACAAGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTa                                                                                                                                                <  1:2956496/149‑1 (MQ=255)
       gcgAACAAGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTAc                                                                                                                                               <  2:4677514/149‑1 (MQ=255)
          aaCAAGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGt                                                                                                                                            >  2:111770/1‑149 (MQ=255)
          aaCAAGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGt                                                                                                                                            >  1:5151186/1‑149 (MQ=255)
          aaCAAGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGt                                                                                                                                            <  1:2809009/149‑1 (MQ=255)
          aaCAAGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGt                                                                                                                                            <  2:500217/149‑1 (MQ=255)
          aaCAAGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGt                                                                                                                                            <  1:201605/149‑1 (MQ=255)
           aCAAGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGtt                                                                                                                                           >  2:4535338/1‑149 (MQ=255)
           aCAAGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGtt                                                                                                                                           >  2:3196/1‑149 (MQ=255)
               gTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGt                                                                                                                                       <  2:201536/149‑1 (MQ=255)
                      tGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGtt                                                                                                                                <  1:3918642/149‑1 (MQ=255)
                      tGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGtt                                                                                                                                <  2:4815502/149‑1 (MQ=255)
                        tttCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTg                                                                                                                              >  1:254274/1‑149 (MQ=255)
                        tttCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTg                                                                                                                              >  2:4364332/1‑149 (MQ=255)
                           cAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAg                                                                                                                           <  1:169370/149‑1 (MQ=255)
                              gCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGcc                                                                                                                        <  2:2811904/149‑1 (MQ=255)
                                cGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTg                                                                                                                      <  2:3618800/149‑1 (MQ=255)
                                cGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTg                                                                                                                      >  1:417110/1‑149 (MQ=255)
                                cGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTg                                                                                                                      <  2:568450/149‑1 (MQ=255)
                                  ttCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGAt                                                                                                                    <  1:3392721/149‑1 (MQ=255)
                                       cgcTAGCAAGTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGAc                                                                                                               <  1:4826101/149‑1 (MQ=255)
                                           aGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGcac                                                                                                           <  1:4535338/149‑1 (MQ=255)
                                             cAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAg                                                                                                         >  1:1581154/1‑149 (MQ=255)
                                             cAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAg                                                                                                         <  2:4632083/149‑1 (MQ=255)
                                             cAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAg                                                                                                         <  1:673100/149‑1 (MQ=255)
                                              aaTTGTTCACTTACCAGGTTAAGACTCCTCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGc                                                                                                        <  2:2657924/149‑1 (MQ=255)
                                              aaTTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGc                                                                                                        <  2:709826/149‑1 (MQ=255)
                                               aTTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCgacctacggttatgttctggctcgttggcctttggcaacgattatcc                                                                                                       >  2:2091500‑M1/1‑102 (MQ=255)
                                               aTTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCg                                                                                                       >  1:4254508/1‑149 (MQ=255)
                                               aTTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTCTATGCCAGATAAGACGCACAGCg                                                                                                       >  1:2676842/1‑149 (MQ=255)
                                                    tCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCa                                                                                                  <  2:755761/149‑1 (MQ=255)
                                                      aCTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATc                                                                                                >  2:45799/1‑149 (MQ=255)
                                                        ttACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTCCGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAg                                                                                              >  2:4078610/1‑149 (MQ=255)
                                                           ccAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCa                                                                                           >  2:2539327/1‑149 (MQ=255)
                                                            cAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCaa                                                                                          <  1:372373/149‑1 (MQ=255)
                                                                ttAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGc                                                                                      >  1:1495464/1‑149 (MQ=255)
                                                                ttAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGc                                                                                      >  1:938390/1‑149 (MQ=255)
                                                                  aaGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTAGTAGGCCTGATAAGACGCACATCGTCTCATCAGGCAACGCCTg                                                                                    >  1:1735889/1‑149 (MQ=255)
                                                                    gACTAATCTTTTTTGCTACTCGTTATTTACTGCAGTAGTGTATTTTTTACGGCTGCCGTTTGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTCGGCCTGATATGACGCACCGCGTCGCATCAGGCAACGGCTGTc                                                                                  <  2:4305006/149‑1 (MQ=21)
                                                                     aCTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCg                                                                                 >  1:333954/1‑149 (MQ=255)
                                                                         aTCGTTTTTGCAACTCGTTAGTTACTGAAGTAGAGGATTTTTTACGGCTTCCGGATGCGGCGTGAACTACCTATCCAGCCTAAGGTTATGTTCAGGTTTGTATGCCTGATAATACGAACAGCGACGCATCAGGCAACGGCTGACCGAtt                                                                             >  1:4945475/1‑148 (MQ=255)
                                                                          tCGTTTTTGCTCCTCTTTAGTGACTGCAGTAGAGTATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCgacctacggttatgttctggctcgttggcctttggcaacgattatcctatgagattggggcaattacgcgccct                                                                            <  2:1735889‑M1/149‑75 (MQ=255)
                                                                          tCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCATGATAAGAAGCACAGCGTCGCATCAGGCAACGGCTGTCGGATgc                                                                            >  2:2318563/1‑149 (MQ=255)
                                                                            gTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCACCGGCTGTCGGATgcgg                                                                          >  2:4719049/1‑149 (MQ=255)
                                                                             tttttGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCGGGTTTGTAGGCCTGATACGACGCACAGCGTCTCATCAGGCAACGGCTGACGGATgcggc                                                                         >  1:4038488/1‑149 (MQ=255)
                                                                             tttgggCTACTCGTTTGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGTTGCGGCGTGAACGCCCTACCCCCCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATgcggc                                                                         <  2:4202750/144‑1 (MQ=21)
                                                                                 tGCTACTCGTTAGTTACTGCTGTAGAGGATTTTTTCCGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGTTTATGTTCCGGTTTGTAGGCATTATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTaa                                                                     <  2:4320081/149‑1 (MQ=21)
                                                                                       tcttttgttaCTGCAGTTGTGTTTTTTTTCCGGCGGCGGTAGGCGGCGTGACCGCCCTAACCAGCCTCGGTTTATGTTCGGTTTTGTCGGCATTATAAGACGCACCGCGTCGCATCCGGCAACGGCTGTCGGATGCGGCGTAAACGCCt                                                               <  2:1338385/143‑1 (MQ=12)
                                                                                       tCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCt                                                               >  1:2440703/1‑149 (MQ=255)
                                                                                            agttaCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATcc                                                          >  1:1557269/1‑149 (MQ=255)
                                                                                             gttaCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGACGGATGCGGCGTAAACGCCATATCCg                                                         >  1:4891570/1‑149 (MQ=255)
                                                                                             gttaCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGACGCATCAGGCAACGGATGCCGGATGCGGCGTAAACGCCATATcgg                                                         >  1:4939353/1‑147 (MQ=255)
                                                                                              ttaCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGa                                                        >  1:4887867/1‑149 (MQ=255)
                                                                                                aCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGGTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGAca                                                      >  2:2836910/1‑148 (MQ=255)
                                                                                                     aGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCACCGGCTGACGGATGCGGCGTAAACGCCTTATCCGACCTACgg                                                 >  1:4569738/1‑149 (MQ=255)
                                                                                                      gTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGt                                                >  1:4464659/1‑149 (MQ=255)
                                                                                                         gagGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTAt                                             >  1:1026049/1‑149 (MQ=255)
                                                                                                           ggATTTTTTAGGGCGGCCGTTGGCGGGTTGAACGCCATATCAAGCCTCGTTTTTTGTTCGGGTTTGTTGGCCTGTTAAGACGCACCGGGAGGCTTCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGt                                           <  1:1170740/149‑1 (MQ=9)
                                                                                                             aTTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCGGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTc                                         <  2:2755680/149‑1 (MQ=255)
                                                                                                               tttttACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGACGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCg                                       >  1:5125115/1‑149 (MQ=255)
                                                                                                                 tttACGGCTGCCGGAGGCGGCGTGCACGCCCTATCCAGCCTACGGTTTTGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCCGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGtt                                     <  2:3356803/149‑1 (MQ=255)
                                                                                                                   taggggggCCGGATGCGGCGTCAACGCCCTATCCAGCCTAGGGTTTTGTTCCGGTTTGTCGGCTTGATAAGACGCACAGCGTCGAATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTg                                   <  2:53686/142‑1 (MQ=14)
                                                                                                                    aCGGCTGCCGGATGCGGCGTGAACGCCCTATCCgacctacggttatgttctggctcgttggcctttggcaacgattatcctatgagattggggcaattacgcgccctcgtcaaatcattgcgctttttctttacgcggttggcgcaaca                                  <  1:2086175‑M1/149‑117 (MQ=255)
                                                                                                                    aCGGCTGCCGGATGCGGCGTGAACGCCCTATCCgacctacggttatgttctggctcgttg                                                                                                                           <  1:3505051‑M1/60‑28 (MQ=255)
                                                                                                                    aCGGCTGCCGGATGCGGCGTGAACGCCCTATCCgacctacggttatgttctggctcgttg                                                                                                                           >  2:3505051‑M1/1‑33 (MQ=255)
                                                                                                                     cGGCTGCCGGTTGCGGGGTTACCGCCCCATCCAGCCTAGGTTTTTGTTCCGGTTTGTCGGCCTTATAAGACGCACAGCGTCGAATCCGCCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTa                                 <  1:2376539/149‑1 (MQ=14)
                                                                                                                     cGGCTGCCGGTGGCGGCGTGAACGCCATACCCCGCCTAGGGTTTGGTTCGGGTTTGTCGGCCTGATACGCCGCCCCGCGTCGCATCCGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTa                                 <  1:3794136/149‑1 (MQ=14)
                                                                                                                      ggCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAg                                >  1:3428407/1‑149 (MQ=255)
                                                                                                                       gCTGCCGGATGCGGCGTGAACGCCCTATCCgacctacggttatgttctggctcgttggcctttggcaacgattatcctatgagattggggcaattacgcgccctcgtcaaatcattgcgctttttctttacgcggttggcgcaacactt                               >  2:2408987‑M1/1‑30 (MQ=255)
                                                                                                                       gCTGCCGGATGCGGCGTGAACGCCCTATCCgacctacggttatgttctggctcgttggcctttggcaacgattatcctatgagattggggcaattacgcgccctcgtcaaatcattgcgctttttctttacgcggttggcgcaacactt                               >  2:5016190‑M1/1‑30 (MQ=255)
                                                                                                                       gCTGCCGGATGCGGCGTGAACGCCCTATCCgacctacggttatgttctggctcgttggcctttggcaacgattatcctatgagattggggcaattacgcgccctcgtcaaatcattgcgctttttctttacgcggttggcgcaacactt                               >  2:380832‑M1/1‑30 (MQ=255)
                                                                                                                        cggCCGGTTGCGGCGGGAACGCCCTATCCCGCCTCCGGTTATGTTCCGGTTTTTAGGCCTTATACGACGCACCGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGc                              <  2:4113311/147‑1 (MQ=14)
                                                                                                                         tGCCGGTTGCGGGGTGAACGCCCTATCCAGCCTAGGTTTTTGTTCCGTTTTGTAGGCCTGATATGACGCACAGCGTCGAATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGcc                             <  1:3461831/149‑1 (MQ=14)
                                                                                                                          gCCGGAGGCGGCTTCAACGCCCCACCCCCCCTTCGGTTTGGTTCGGGTTTGTAGGCCTGATAACACGCACAGCGCCGAATCAGCCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCt                            <  1:625159/149‑1 (MQ=14)
                                                                                                                           ccGGATGCGGCGTGAACGCCCTATCCgacctacggttatgttctggctcgttggcctttggcaacgattatcctatgagattggggcaattacgcgccctcgtcaaatcattgcgctttttctttacgcggttggcgcaacacttcgtt                           <  1:2200383‑M1/149‑124 (MQ=255)
                                                                                                                           ccGGATGCGGCGTCAACGCCATATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTg                           <  2:1908318/149‑1 (MQ=255)
                                                                                                                             ggATGCGGCGTGAACGCCCTATCCgacctacggttatgttctggctcgttggcctttggcaacgattatcctatgagattggggcaattacgcgccctcgtcaaatcattgcgctttttctttacgcggttggcgcaacacttcgttga                         >  2:3431995‑M1/1‑24 (MQ=255)
                                                                                                                             ggATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATACGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTGATGTGCCGTTTGTAGGCCTGAt                         >  2:4987269/1‑149 (MQ=255)
                                                                                                                             ggATGCGGCGTGAACGCCCTACCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGAt                         <  2:795317/149‑1 (MQ=255)
                                                                                                                              gATGCGGCGTGAACGCCCTATCCgacctacggttatgttctggctcgttggcctttggcaacgattatcctatgagattggggcaattacgcgccctcgtcaaatcattgcgctttttctttacgcggttggcgcaacacttcgttgat                        >  2:653555‑M1/1‑23 (MQ=255)
                                                                                                                              gATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGTTAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATa                        <  2:245199/149‑1 (MQ=255)
                                                                                                                              gATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATa                        >  1:710677/1‑149 (MQ=255)
                                                                                                                                tGCGGCGTGAACGCCCTATCCgacctacggttatgttctggctcgttggcctttggcaacgattatcctatgagattggggcaattacgcgccctcgtcaaatcattgcgctttttctttacgcggttggcgcaacacttcgttgattt                      <  2:312595‑M1/149‑129 (MQ=255)
                                                                                                                                gggggcgTGAACGCCCTATCCAGCCTCGGTTTTTGTTGGGGTTTGTGGGCCTTATACGACGCACCGGGGCGCATCCGGCCACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAg                      <  1:1922874/146‑1 (MQ=14)
                                                                                                                                 gcggcgTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGGTTGTAGGCCTGATAAGa                     >  1:3586663/1‑149 (MQ=255)
                                                                                                                                      gTGAACGCCCTATCCgacctacggttatgttctggctcgttggcctttggcaacgattatcctatgagattggggcaattacgcgccctcgtcaaatcattgcgctttttctttacgcggttggcgcaacacttcgttgatttgcggat                <  1:897374‑M1/149‑135 (MQ=255)
                                                                                                                                      gTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGACGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGGTTGTTTGCCTGATACGACGcac                >  2:5071125/1‑149 (MQ=14)
                                                                                                                                       ttaaCGCCCTATCCAGCCTAGGGTTTTGTTCCGTTTTGTTGGCCTTATAAGACGCACAGCGTCGAATCAGGAAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGcaca               <  2:2936656/147‑1 (MQ=14)
                                                                                                                                       tGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGcaca               >  1:3014830/1‑149 (MQ=255)
                                                                                                                                        gAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCAGTTTGTATGCCTGATAAGACGCACAg              >  1:978255/1‑149 (MQ=255)
                                                                                                                                         aaCGCCCTATCCAGCCTACGGTTATGTTCCGGTTGGTAGGCCTTATAAGACGCACAGCTTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGc             <  2:1637299/149‑1 (MQ=255)
                                                                                                                                          aCGCCCTATCCgacctacggttatgttctggctcgttggcctttggcaacgattatcctatgagattggggcaattacgcgccctcgtcaaatcattgcgctttttctttacgcggttggcgcaacacttcgttgatttgcggatcgtc            >  2:3035831‑M1/1‑11 (MQ=255)
                                                                                                                                           cGCCCTATCCgacctacggttatgttctggctcgttggcctttggcaacgattatcctatgagattggggcaattacgcgccctcgtcaaatcattgcgctttttctttacgcggttggcgcaacacttcgttgatttgcggatcgtcc           <  2:1184137‑M1/149‑140 (MQ=255)
                                                                                                                                             cccTATCCgacctacggttatgttctggctcgttggcctttggcaacgattatcctatgagattggggcaattacgcgccctcgtcaaatcattgcgctttttctttacgcggttggcgcaacacttcgttgatttgcggatcgtccag         <  1:937364‑M1/149‑142 (MQ=255)
                                                                                                                                               cTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCa       >  1:2841729/1‑149 (MQ=255)
                                                                                                                                                tATCCAGCCTTGGTTTTTGTTCGGTTTTGTTGGCCTGATAAGACGCACTGCGTCGCATCAGCCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCAt      <  1:1364710/149‑1 (MQ=11)
                                                                                                                                                  tCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCa    >  1:1140694/1‑149 (MQ=40)
                                                                                                                                                   ccgacctacggttatgttctggctcgttggcctttggcaacgattatcctatgagattggggcaattacgcgccctcgtcaaatcattgcgctttttctttacgcggttggcgcaacacttcgttgatttgcggatcgtccagcggacc   <  2:952742‑M1/149‑148 (MQ=255)
                                                                                                                                                    |                                                                                                                                                    
GAGGATCGCGAACAAGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGG  >  CP009273/3385313‑3385609

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.