New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 1635219 =16 (0.050)249 (0.840) 140/274 NT 94.0% intergenic (‑377/+377) essQ/cspB Qin prophage; putative S lysis protein/Qin prophage; cold shock protein
?CP009273 = 2063752 NA (NA)noncoding (1/1331 nt) IS2 repeat region

Only 100 of 588 total aligned reads displayed.

ACGTAAAAACTCAAAATCACGCCGTAATTATCTCGTTAAATGTTCCTGCCCAAACTGCACCCAAGAGTCAGAACACAGTTTTTCAAGAGTACAAAAAGGTGCCCTTTTGATCTGCCCTCATTGCAACAAAGTATTCCAGACAAATCTTAAAGCTGTAGCCTGATTGATTTTATTAGTAACAAGTATTTTTTATATTTTAATAATATATTTAAAGCAGATAATAAAAAACCCGCCTGAGCGGGTTTGAGATTGTGGTGCTTTTTGTGGGAGTCATCCACTTACGCACTTTGTTTTGCCAT  >  CP009273/1635070‑1635368
                                                                                                                                                     |                                                                                                                                                     
cgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaa                                                                                                                                                       <  1:2234236‑M1/1‑1 (MQ=255)
aCGTAAAAACTCAAAATCACGCCGTAATTATCTCGTTAAATGTTCCTGCCCAAACTGCACCCAAGAGTCAGAACACAGTTTTTCAAGAGTACAAAAAGGTGCCCTTTTGATCTGCCCTCATTGCAACAAAGTATTCCAGACAAATCTTaa                                                                                                                                                       <  2:3574769/150‑1 (MQ=255)
 gatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattctgggggccagtctaaa                                                                                                                                                      <  2:704309‑M1/2‑1 (MQ=255)
 gatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaaa                                                                                                                                                      <  1:1172606‑M1/2‑1 (MQ=255)
 gatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaaa                                                                                                                                                      >  2:2777137‑M1/149‑150 (MQ=255)
  atcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtatggagattcagggggccagtctaAAg                                                                                                                                                     <  2:2712582‑M1/3‑1 (MQ=255)
    cttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaAAGCt                                                                                                                                                   >  2:1029739‑M1/146‑150 (MQ=255)
    cttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaAAGCt                                                                                                                                                   >  1:4381615‑M1/146‑150 (MQ=255)
      tttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaAAGCTGt                                                                                                                                                 <  2:1115111‑M1/7‑1 (MQ=255)
      aaaCTCAAAATCACGCCGTAATTATCTCGTTAAATGTTCCTGCCCAAACTGCACCCAAGAGTCAGAACACAGTTTTTCAAGAGTACAAAAAGGTGCCCTTTTGATCTGCCCTCATTGCAACAAAGTATTCCAGACAAATCTTAAAGCTtg                                                                                                                                                 >  2:892327‑M1/1‑148 (MQ=255)
               tggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaAAGCTGTAGCCtgatt                                                                                                                                        >  2:1996683‑M1/135‑150 (MQ=255)
               tggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaAAGCTGTAGCCtgatt                                                                                                                                        >  1:2918277‑M1/135‑150 (MQ=255)
                   acgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaAAGCTGTAGCCTgattgatt                                                                                                                                    >  1:2143402‑M1/131‑150 (MQ=255)
                   acgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaAAGCTGTAGCCTgattgatt                                                                                                                                    >  1:1348151‑M1/131‑150 (MQ=255)
                    gCCGTAATTATCTCGTTAAATGTTCCTGCCCAAACTGCACCCAAGAGTCAGAACACAGTTTTTCAAGAGTACAAAAAGGTGCCCTTTTGATCTGCCCTCATTGCAACAAAGTATTCCAGACAAATCTTAAAGCTtggatttgcccctata                                                                                                                                   <  1:1533444‑M1/150‑17 (MQ=255)
                    gCCGTAATTATCTCGTTAAATGTTCCTGCCCAAACTGCACCCAAGAGTCAGAACACAGTTTTTCAAGAGTACAAAAAGGTGCCCTTTTGATCTGCCCTCATTGCAACAAAGTATTCCAGACAAATCTTAAAGCTtggatttgcccctata                                                                                                                                   <  1:1771737‑M1/150‑17 (MQ=255)
                    gCCGTAATTATCTCGTTAAATGTTCCTGCCCAAACTGCACCCAAGAGTCAGAACACAGTTTTTCAAGAGTACAAAAAGGTGCCCTTTTGATCTGCCCTCATTGCAACAAAGTATTCCAGACAAATCTTAAAGCTtggatttgcccctata                                                                                                                                   <  1:1663915‑M1/150‑17 (MQ=255)
                    gCCGTAATTATCTCGTTAAATGTTCCTGCCCAAACTGCACCCAAGAGTCAGAACACAGTTTTTCAAGAGTACAAAAAGGTGCCCTTTTGATCTGCCCTCATTGCAACAAAGTATTCCAGACAAATCTTAAAGCTGTAGCCTGATTGAttt                                                                                                                                   <  2:1382530/150‑1 (MQ=255)
                      ccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaAAGCTGTAGCCTGATTGATTtta                                                                                                                                 >  1:3120482‑M1/128‑150 (MQ=255)
                       gTAATTATCTCGTTAAATGTTCCTGCCCAAACTGCACCCAAGAGTCAGAACACAGTTTTTCAAGAGTACAAAAAGGTGCCCTTTTGATCTGCCCTCATTGCAACAAAGTATTCCAGACAAATCTTAAAGCTtggatttgcccctatattt                                                                                                                                >  1:3710344‑M1/1‑131 (MQ=255)
                       gTAATTATCTCGTTAAATGTTCCTGCCCAAACTGCACCCAAGAGTCAGAACACAGTTTTTCAAGAGTACAAAAAGGTGCCCTTTTGATCTGCCCTCATTGCAACAAAGTATTCCAGACAAATCTTAAAGCTtggatttgcccctatattt                                                                                                                                <  2:3025453‑M1/150‑20 (MQ=255)
                         aaTTATCTCGTTAAATGTTCCTGCCCAAACTGCACCCAAGAGTCAGAACACAGTTTTTCAAGAGTACAAAAAGGTGCCCTTTTGATCTGCCCTCATAGCAACAAAGTATTCCAGACAAATCTTAAAGCTtggatttgcccctatatttcc                                                                                                                              >  2:1658653‑M1/1‑129 (MQ=255)
                           ttATCTCGTTAAATGTTCCTGCCCAAACTGCACCCAAGAGTCAGAACACAGTTTTTCAAGAGTACAAAAAGGTGCCCTTTTGATCTGCCCTCATTGCAACAAAGTATTCCAGACAAATCTTAAAGCTtggatttgcccctatatttccag                                                                                                                            >  2:3198110‑M1/1‑127 (MQ=255)
                           ttATCTCGTTAAATGTTCCTGCCCAAACTGCACCCAAGAGTCAGAACACAGTTTTTCAAGAGTACAAAAAGGTGCCCTTTTGATCTGCCCTCATTGCAACAAAGTATTCCAGACAAATCTTAAAGCTtggatttgcccctatatttccag                                                                                                                            <  2:4903538‑M1/150‑24 (MQ=255)
                           ttATCTCGTTAAATGTTCCTGCCCAAACTGCACCCAAGAGTCAGAACACAGTTTTTCAAGAGTACAAAAAGGTGCCCTTTTGATCTGCCCTCATTGCAACAAAGTATTCCAGACAAATCTTAAAGCTtggatttgcccctatatttccag                                                                                                                            >  2:289397‑M1/1‑127 (MQ=255)
                           tgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcggggggccagtctaAAGCTGTAGCCTGATTGATTGTATTAGt                                                                                                                            <  2:1455356‑M1/28‑1 (MQ=255)
                           tgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaAAGCTGTAGCCTGATTGATTTTATTAGt                                                                                                                            >  1:2284568‑M1/123‑150 (MQ=255)
                              tctcGTTAAATGTTCCTGCCCAAACTGCACCCAAGAGTCAGAACACAGTTTTTCAAGAGTACAAAAAGGTGCCCTTTTGATCTGCCCTCATTGCAACAAAGTATTCCAGACAAATCTTAAAGCTtggatttgcccctatatttccagaca                                                                                                                         >  2:3102064‑M1/1‑124 (MQ=255)
                              gtttctccggccctaagacatcaatcatctgttctccaatgactagtctaacaactaggattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaAAGCTGTAGCCTGAGTGATTGTATTAGTAAc                                                                                                                         <  2:1284254‑M1/31‑1 (MQ=255)
                                ttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaAAGCTGTAGCCTGATTGATTTTATTAGTAACaa                                                                                                                       >  1:1939421‑M1/118‑150 (MQ=255)
                                     cggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaAAGCTGTAGCCTGATTGATTTTATTAGTAACAAGTAtt                                                                                                                  >  1:1135990‑M1/113‑150 (MQ=255)
                                      aaTGTTCCTGCCCGAACTGCACCCAAGAGTCAGAACACAGTTTTTCAAGAGTACAAAAAGGTGCCCTTTTGATCTGCCCTCATTGCAACAAAGTATTCCAGACAAATCTTAAAGCTGTAGCCTGATTGATTTTATTAGTAACAAGTAttt                                                                                                                 >  2:2215877/1‑150 (MQ=255)
                                      aaTGTTCCTGCCCAAACTGCACCCAAGAGTCAGAACACAGTTTTTCAAGAGTACAAAAAGGTGCCCTTTTGATCTGCCCTCATTGCAACAAAGTATTCCAGACAAATCTTAAAGCTGTAGCCTGATTGATTTTATTAGTAACAAGTAttt                                                                                                                 >  2:4763802/1‑150 (MQ=255)
                                        tGTTCCTGCCCAAACTGCACCCAAGAGTCAGAACACAGTTTTTCAAGAGTACAAAAAGGTGCCCTTTTGATCTGCCCTCATTGCAACAAAGTATTCCAGACAAATCTTAAAGCTtggatttgcccctatatttccagacatctgttatca                                                                                                               >  1:4088561‑M1/1‑114 (MQ=255)
                                         gTTCCTGCCCAAACTGCACCCAAGAGTCAGAACACAGTTTTTCAAGAGTACAAAAAGGTGCCCTTTTGATCTGCCCTCATTGCAACAAAGTATTCCAGACAAATCTTAAAGCTtggatttgcccctatatttccagacatctgttatcac                                                                                                              <  2:535495‑M1/150‑38 (MQ=255)
                                          ttCCTGCCCAAACTGCACCCAAGAGTCAGAACACAGTTTTTCAAGAGTACAAAAAGGTGCCCTTTTGATCTGCCCTCATTGCAACAAAGTATTCCAGACAAATCTTAAAGCTtggatttgcccctatatttccagacatctgttatcact                                                                                                             >  2:3274589‑M1/1‑112 (MQ=255)
                                          ttCCTGCCCAAACTGCACCCAAGAGTCAGAACACAGTTTTTCAAGAGTACAAAAAGGTGCCCTTTTGATCTGCCCTCATTGCAACAAAGTATTCCAGACAAATCTTAAAGCTGTAGCCTGATTGATTTTATTAGTAACAAGTATTTTTta                                                                                                             <  2:2801303/150‑1 (MQ=255)
                                             cTGCCCAAACTGCACCCAAGAGTCAGAACACAGTTTTTCAAGAGTACAAAAAGGTGCCCTTTTGATCTGCCCTCATTGCAACAAAGTATTCCAGACAAATCTTAAAGCTtggatttgcccctatatttccagacatctgttatcacttaa                                                                                                          >  1:764673‑M1/1‑109 (MQ=255)
                                             agacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaAAGCTGTAGCCTGATTGATTTTATTAGTAACAAGTATTTTTTatat                                                                                                          >  1:2660170‑M1/105‑150 (MQ=255)
                                              tGCCCAAACTGCACCCAAGAGTCAGAACACAGTTTTTCAAGAGTACAAAAAGGTGCCCTTTTGATCTGCCCTCATTGCAACAAAGTATTCCAGACAAATCTTAAAGCTtggatttgcccctatatttccagacatctgttatcacttaac                                                                                                         >  1:4691710‑M1/1‑108 (MQ=255)
                                               gCCCAAACTGCACCCAAGAGTCAGAACACAGTTTTTCAAGAGTACAAAAAGGTGCCCTTTTGATCTGCCCTCATTGCAACAAAGTATTCCAGACAAATCTTAAAGCTtggatttgcccctatatttccagacatctgttatcacttaacc                                                                                                        >  1:4312384‑M1/1‑107 (MQ=255)
                                               acatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaAAGCTGTAGCCTGATTGATTTTATTAGTAACAAGTATTTTTTATAttt                                                                                                        <  1:2533886‑M1/48‑1 (MQ=255)
                                                cccAAACTGCACCCAAGAGTCAGAACACAGTTTTTCAAGAGTACAAAAAGGTGCCCTTTTGATCTGCCCTCATTGCAACAAAGTATTCCAGACAAATCTTAAAGCTtggatttgcccctatatttccagacatctgttatcacttaaccc                                                                                                       >  1:3337651‑M1/1‑106 (MQ=255)
                                                 ccAAACTGCACCCAAGAGTCAGAACACAGTTTTTCAAGAGTACAAAAAGGTGCCCTTTTGATCTGCCCTCATTGCAACAAAGTATTCCAGACAAATCTTAAAGCTtggatttgcccctatatttccagacatctgttatcacttaaccca                                                                                                      <  1:1849474‑M1/150‑46 (MQ=255)
                                                   aaaCTGCACCCAAGAGTCAGAACACAGTTTTTCAAGAGTACAAAAAGGTGCCCTTTTGATCTGCCCTCATTGCAACAAAGTATTCCAGACAAATCTTAAAGCTtggatttgcccctatatttccagacatctgttatcacttaacccatt                                                                                                    <  1:4998700‑M1/150‑48 (MQ=255)
                                                    aatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaAAGCTGTAGCCTGATTGATTTTATTAGTAACAAGTATTTTTTATATTTtaata                                                                                                   >  1:4905886‑M1/98‑150 (MQ=255)
                                                    aatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaAAGCTGTAGCCTGATTGATTTTATTAGTAACAAGTATTTTTTATATTTtaata                                                                                                   >  2:60682‑M1/98‑150 (MQ=255)
                                                    aaCTGCACCCAAGAGTCAGAACACAGTTTTTCAAGAGTACAAAAAGGTGCCCTTTTGATCTGCCCTCATTGCAACAAAGTATTCCAGACAAATCTTAAAGCTtggatttgcccctatatttccagacatctgttatcacttaacccatta                                                                                                   >  2:3904421‑M1/1‑102 (MQ=255)
                                                    aaCTGCACCCAAGAGTCAGAACACAGTTTTTCAAGAGTACAAAAAGGTGCCCTTTTGATCTGCCCTCATTGCAACAAAGTATTCCAGACAAATCTTAAAGCTtggatttgcccctatatttccagacatctgttatcacttaacccatta                                                                                                   <  1:2813048‑M1/150‑49 (MQ=255)
                                                     aCTGCACCCAAGAGTCAGAACACAGTTTTTCAAGAGTACAAAAAGGTGCCCTTTTGATCTGCCCTCATTGCAACAAAGTATTCCAGACAAATCTTAAAGCTtggatttgcccctatatttccagacatctgttatcacttaacccattac                                                                                                  >  2:1867661‑M1/1‑101 (MQ=255)
                                                        atctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaAAGCTGTAGCCTGATTGATTTTATTAGTAACAAGTATTTTTTATATTTTAATAatat                                                                                               <  2:1562324‑M1/57‑1 (MQ=255)
                                                        atctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaAAGCTGTAGCCTGAGTGATTTTATTAGTAACAAGTATTTTTTATATTTTAATAatat                                                                                               <  2:4123274‑M1/57‑1 (MQ=255)
                                                          aCCCAAGAGTCAGAACACAGTTTTTCAAGAGTACAAAAAGGTGCCCTTTTGATCTGCCCTCATTGCAACAAAGTATTCCAGACAAATCTTAAAGCTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcc                                                                                             >  2:1699923‑M1/1‑96 (MQ=255)
                                                           tgttctccaatgactagtctaaaaactagtattaagactgtcacttatttaagtgatattggttgtctggagattcagggggccagtctaAAGCTGTAGCCTGATTGATTTTATTAGTAACAAGTATTTTTTATATTTTAATAATATAtt                                                                                            <  2:3814828‑M1/60‑1 (MQ=255)
                                                            gttctccacggactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaAAGCTGTAGCCTGATTGATTTTAATAGTAACAAGTATTTTTTATATTTTAATAATATAttt                                                                                           >  2:4037579‑M1/90‑150 (MQ=255)
                                                             ttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaAAGCTGTAGCCTGATTGATTTTATTAGTAACAAGTATTTTTTATATTTTAATAATATATTTa                                                                                          >  1:3248252‑M1/89‑150 (MQ=255)
                                                             cAAGAGTCATAACACAGTTTTTCAAGAGTACAAAAAGGTGCACTTTTGATCTGCCCTCATTGCAACAAAGTATTCCAGACAAATCTTAAAGCTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccga                                                                                          <  2:4859671‑M1/150‑58 (MQ=255)
                                                             cAAGAGTCAGAACACAGTTTTTCAAGAGTACAAAAAGGTGCCCTTTTGATCTGCCCTCATTGCAACAAAGTATTCCAGACAAATCTTAAAGCTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgc                                                                                          >  1:4573211‑M1/1‑93 (MQ=255)
                                                               agacTCAGAACACAGTTTTTCAAGAGTACAAAAAGGTGCCCTTTTGATCTGCCCTCATTGCAACAAAGTATTCCAGACAAATCTTAAAGCTGTAGCCTGATTGATTTTATTAGTAACAAGTATTTTTTATATTTTAATAATATATTTaaa                                                                                        <  2:1786512/150‑1 (MQ=255)
                                                                 ccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaAAGCTGTAGCCTGATTGATTTTATTAGTAACAAGTATTTTTTATATTTTAATAATATATTTAAAGc                                                                                      >  1:2333720‑M1/85‑150 (MQ=255)
                                                                  gTCAGAACACAGTTTTTCAAGAGTACAAAAAGGTGCCCTTTTGATCTGCCCTCATTGCAACAAAGTATTCCAGACAAATCTTAAAGCTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccg                                                                                     >  1:5148032‑M1/1‑88 (MQ=255)
                                                                   tCAGAACACAGTTTTTCAAGAGTACAAAAAGGTGCCCTTTTGATCTGCCCTCATTGCAACAAAGTATTCCAGACAAATCTTAAAGCTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgc                                                                                    <  1:2397437‑M1/150‑64 (MQ=255)
                                                                    cAGAACACAGTTTTTCAAGAGTACAAAAAGGTGCCCTTTTGATCTGCCCTCATTGCAACAAAGTATTCCAGACAAATCTTAAAGCTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgca                                                                                   >  2:421882‑M1/1‑86 (MQ=255)
                                                                     tgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaAAGCTGTAGCCTGATTGATTTTATTAGTAACAAGTATTTTTTATATTTTAATAATATATTTAAAGCAGat                                                                                  <  2:4605689‑M1/70‑1 (MQ=255)
                                                                     aGAACACAGTTTTTCAAGAGTACAAAAAGGTGCCCTTTTGATCTGCCCTCATTGCAACAAAGTATTCCAGACAAATCTTAAAGCTtggatttgcccctatatttccagacatctgttatcacttaacccataaaaagcccgctgccgcag                                                                                  >  2:4337327‑M1/1‑85 (MQ=255)
                                                                        acacAGTTTTTCAAGAGTACAAAAAGGTGCCCTTTTGATCTGCCCTCATTGCAACAAAGTATTCCAGACAAATCTTAAAGCTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagata                                                                               <  2:721189‑M1/150‑69 (MQ=255)
                                                                          agtctaaaaactagtattaatactatcacttatttaagtgatattggttgactggagattcagggggccagtctaAAGCTGTAGCCTGATTGATTTTATTAGTAACAAGTATTTTTTATATTTTAATAATATATTTAAAGCAGAtaataa                                                                             <  1:4467917‑M1/75‑1 (MQ=255)
                                                                          agtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaAAGCTGTAGCCTGATTGATTTTATTAGTAACAAGTATTTTTTATATTTTAATAATATATTTAAAGCAGAtaataa                                                                             >  2:2077277‑M1/76‑150 (MQ=255)
                                                                           caGTTTTTCAAGAGTACAAAAAGGTGCCCTTTTGATCTGCCCTCATTGCAACAAAGTATTCCAGACAAATCTTAAAGCTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattc                                                                            >  2:4961664‑M1/1‑79 (MQ=255)
                                                                               aaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaAAGCTGTAGCCTGATTGATTTTATTAGTAACAAGTATTTTTTATATTTTAATAATATATTTAAAGCAGATAATAAAAAAc                                                                        <  1:2095719‑M1/80‑1 (MQ=255)
                                                                                  tCAAGAGTACAAAAAGGTGCCCTTTTGATCTGCCCTCATTGCAACAAAGTATTCCAGACAAATCTTAAAGCTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggc                                                                     >  1:3769617‑M1/1‑72 (MQ=255)
                                                                                          aCAAAAAGGTGCCCTTTTGATCTGCCCTCATTGCAACAAAGTATTCCAGACAAATCTTAAAGCTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgata                                                             <  1:205677‑M1/150‑87 (MQ=255)
                                                                                           taagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaAAGCTGTAGCCTGATTGATTTTATTAGTAACAAGTATTTTTTATATTTTAATAATATATTTAAAGCAGATAATAAAAAACCCGCCTGAGCgg                                                            <  1:3991898‑M1/92‑1 (MQ=255)
                                                                                             agactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaAAGCTGTAGCCTGATTGATTTTATTAGTAACAAGTATTTTTTATATTTTAATAATATATTTAAAGCAGATAATAAAAAACCCGCCTGAGCGGGt                                                          <  1:4173679‑M1/94‑1 (MQ=255)
                                                                                               aaGGTGCCCTTTTGATCTGCCCTCATTGCAACAAAGTATTCCAGACAAATCTTAAAGCTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataaccca                                                        <  1:3903180‑M1/150‑92 (MQ=255)
                                                                                                      ccTTTTGATCTGCCCTCATTGCAACAAAGTATTCCAGACAAATCTTAAAGCTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcact                                                 <  2:3465191‑M1/150‑99 (MQ=255)
                                                                                                       ttatttaagtgatattggttgtctggagattaagggggcaagtctaAAGCTGTAGCATGATTTATTTTATTAGTAAAAAGTATTTTTTATATTTTAATAATATATTTAAAGAAGATAATAAAAAACCCGCATGAGCGGTTTTGAGATtgt                                                <  1:546917‑M1/104‑1 (MQ=255)
                                                                                                        ttttGATCTGCCCTCATTGCAACAAAGTATTCCAGACAAATCTTAAAGCTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactat                                               >  2:195693‑M1/1‑50 (MQ=255)
                                                                                                         tttGATCTGCCCTCATTGCAACAAAGTATTCCAGACAAATCTTAAAGCTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatg                                              >  2:4647090‑M1/1‑49 (MQ=255)
                                                                                                         atttaagtgatattggttgtctggagattcagggggccagtctaAAGCTGTAGCCTGATTGATTTTATTAGTAACAAGTATTTTTTATATTTTAATAATATATTTAAAGCAGATAATAAAAAACCCGCCTGAGCGGGTTTGAGATTgtgg                                              >  1:3086399‑M1/45‑150 (MQ=255)
                                                                                                          tttaagtgatattggttgtctggagattcagggggccagtctaAAGCTGTAGCCTGATTGATTTTATTAGTAACAAGTATTTTTTATATTTTAATAATATATTTAAAGCAGATAATAAAAAACCCGCCTGAGCGGGTTTGAGATTgtggt                                             >  1:1455013‑M1/44‑150 (MQ=255)
                                                                                                            taagtgatattggttgtctggagattcagggggccagtctaAAGCTGTAGCCTGATTGATTTTATTAGTAACAAGTATTTTTTATATTTTAATAATATATTTAAAGCAGATAATAAAAAACCCGCCTGAGCGGGTTTGAGATTGTGGTGc                                           <  1:1078750‑M1/109‑1 (MQ=255)
                                                                                                            taagtgatattggttgtctggagattcagggggccagtctaAAGCTGTAGCCTGATTGATTTTATTAGTAACAAGTATTTTTTATATTTTAATAATATATTTAAAGCAGATAATAAAAAACCCGCCTGAGCGGGTTTGAGATTGTGGTGc                                           <  1:1706992‑M1/109‑1 (MQ=255)
                                                                                                                tGCCCTCATTGCAACAAAGTATTCCAGACAAATCTTAAAGCTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgc                                       <  1:3541738‑M1/150‑109 (MQ=255)
                                                                                                                 gCCCTCATTGCAACAAAGTATTCCAGACAAATCTTAAAGCTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgcc                                      >  2:3654449‑M1/1‑41 (MQ=255)
                                                                                                                         tGCAACAAAGTATTCCAGACAAATCTTAAAGCTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgtta                              >  1:4055051‑M1/1‑33 (MQ=255)
                                                                                                                            tctggagattcagggggccagtctaAAGCTGTAGCCTGATTGATTTTATTAGTAACAAGTATTTTTTATATTTTAATAATATATTTAAAGCAGATAATAAAAAACCCGCCTGAGCGGGTTTGAGATTGTGGTGCTTTTTGTGGGAGTCAt                           >  1:89347‑M1/26‑150 (MQ=255)
                                                                                                                            aacaaAGTATTCCAGACAAATCTTAAAGCTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataa                           <  2:4415131‑M1/150‑121 (MQ=255)
                                                                                                                               ggagattcagggggccagtctaAAGCTGTAGCCTGATTGATTTTATTAGTAACAAGTATTTTTTATATTTTAATAATATATTTAAAGCAGATAATAAAAAACCCGCCTGAGCGGGTTTGAGATTGTGGTGCTTTTTGTGGGAGTCATCCa                        <  1:466695‑M1/128‑1 (MQ=255)
                                                                                                                                aaGTATTCCAGACAAATCTTAAAGCTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgct                       <  2:2386509‑M1/150‑125 (MQ=255)
                                                                                                                                    ttcagggggccagtctaAAGCTGTAGCCTGATTGATTTTATTAGTAACAAGTATTTTTTATATTTTAATAATATATTTAAAGCAGATAATAAAAAACCCGCCTGAGCGGGTTTGAGATTGTGGTGCTTTTTGTGGGAGTCATCCACTTAc                   >  2:2506700‑M1/18‑150 (MQ=255)
                                                                                                                                    aTTCCAGACAAATCTTAAAGCTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaa                   >  1:4803296‑M1/1‑22 (MQ=255)
                                                                                                                                    aTTCCAGACAAATCTTAAAGCTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaa                   <  1:3531665‑M1/150‑129 (MQ=255)
                                                                                                                                     tcagggggccagtctaAAGCTGTAGCCTGATTGATTTTATTAGTAACAAGTATTTTTTATATTTTAATAATATATTTAAAGCAGATAATAAAAAACCCGCCTGAGCGGGTTTGAGATTGTGGTGCTTTTTGTGGGAGTCATCCACTTACg                  >  2:2399672‑M1/17‑150 (MQ=255)
                                                                                                                                         ggggccagtctaAAGCTGTAGCCTGATTGATTTTATTAGTAACAAGAATTTTTTATATTTTAATAATATATTTAAAGCAGATAATAAAAAACCCGCCTGAGCGTGTATGAGATTGTGGTGCTTTTTGTGGGAGTCATCCACTTACGCACt              <  1:2976760‑M1/138‑1 (MQ=255)
                                                                                                                                           ggccagtctaAAGCTGTAGCCTGATTGATTTTATTAGTAACAAGTATTTTTTATATTTTAATAATATATTTAAAGCAGATAATAAAAAACCCGCCTGAGCGGGTTTGAGATTGTGGTGCTTTTTGTGGGAGTCATCCACTTACGCACttt            >  2:3382154‑M1/11‑150 (MQ=255)
                                                                                                                                              aaTCTTAAAGCTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgca         <  1:675895‑M1/150‑139 (MQ=255)
                                                                                                                                               aTCTTAAATCTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattctttataatgctcgaacgcctctgcaa        <  2:4484782‑M1/150‑140 (MQ=255)
                                                                                                                                                 tctaAAGCTGTAGCCTGATTGATTTTATTAGTAACAAGTATTTTTTATATTTTAATAATATATTTAAAGCAGATAATAAAAAACCCGCCTGAGCGGGTTTGAGATTGCGGTGCTTTTTGTGGGAGTCATCCACTTACGCACTTTGTTTTg      >  2:2611264‑M1/5‑150 (MQ=255)
                                                                                                                                                     aaGCTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttct  <  2:816480‑M1/150‑146 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
ACGTAAAAACTCAAAATCACGCCGTAATTATCTCGTTAAATGTTCCTGCCCAAACTGCACCCAAGAGTCAGAACACAGTTTTTCAAGAGTACAAAAAGGTGCCCTTTTGATCTGCCCTCATTGCAACAAAGTATTCCAGACAAATCTTAAAGCTGTAGCCTGATTGATTTTATTAGTAACAAGTATTTTTTATATTTTAATAATATATTTAAAGCAGATAATAAAAAACCCGCCTGAGCGGGTTTGAGATTGTGGTGCTTTTTGTGGGAGTCATCCACTTACGCACTTTGTTTTGCCAT  >  CP009273/1635070‑1635368

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.