New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 2063752	NA (NA)	6 (0.020)	4/278	NT	2.3%	noncoding (1/1331 nt)	IS2	repeat region
	?	CP009273	2753865 =	260 (0.980)					intergenic (+112/‑41)	yfjI/yfjJ	CP4‑57 prophage; uncharacterized protein/CP4‑57 prophage; uncharacterized protein
Rejected: Frequency below/above cutoff threshold.

GGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/2063620‑2063752 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGAACGATCACTTACTCCAATATCATTGGCCAGGATACTATATGACATACGATAGTGAATTCGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACG  >  CP009273/2753865‑2754012                                                                                                                                                                                                                                                                                           GGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAAGAACGATCACTTACTC                                                                                                                                     >  1:1153559/1‑150                                                             TCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAAGAACGATCACTTACTCCAATATCATTGGCCAGGATACTATATGACATACGATAGTGAATTCGGATCACATGTATCC                                                                         <  1:1559787/150‑1                                                                                     CACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAAGAACGATCACTTACTCCAATATCATTGGCCAGGATACTCTATGACATACGATAGTGAATTCGGATCACATGTATCCCTATATCGGGATAGAATCAAACAG                                                 >  2:2421535/1‑150                                                                                     CACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAAGAACGATCACTTACTCCAATATCATTGGCCAGGATACTATATGACATACGATAGTGAATTCGGATCACATGTATCCCTATATCGGGCTAGAATCAAACAG                                                 >  2:108027/1‑150                                                                                     CACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAAGAACGATCACTTACTCCAATATCATTGGCCAGGATACTATATGACATACGATAGTGAATTCGGATCACATGTATCCCTATATCGGGATAGAATCAAACAG                                                 >  2:2421578/1‑150                                                                                               AGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAAGAACGATCACTTACTCCAATATCATTGGCCAGGATACTATATGACATACGATAGTGAATTCGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATG                                       <  2:2402326/150‑1                                                                                                                                    TAAGAACGATCACTTACTCCAATATCATTGGCCAGGATACTATATGACATACGATAGTGAATTCGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACG  >  2:3975516/1‑150                                                                                                                                                                                                                                                                                           GGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/2063620‑2063752 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGAACGATCACTTACTCCAATATCATTGGCCAGGATACTATATGACATACGATAGTGAATTCGGATCACATGTATCCCTATATCGGGATAGAATCAAACAGGTTATTGATGACTCCCTAAACGAACATCTTAACTCAATGATTCTACG  >  CP009273/2753865‑2754012

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.