mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 21 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4429937 | 286 (0.920) | 4 (0.010) | 4/258 | NT | 1.4% | coding (1096/1344 nt) | ytfL | UPF0053 family inner membrane protein |
| ? | CP009273 | 4430232 = | 315 (1.090) | coding (801/1344 nt) | ytfL | UPF0053 family inner membrane protein | |||||
| * | ? | CP009273 | = 4287050 | 338 (1.090) | 4 (0.010) | 4/254 | NT | 1.3% | coding (2134/2148 nt) | fdhF | formate dehydrogenase‑H, selenopolypeptide subunit |
| ? | CP009273 | 4287399 = | 287 (1.010) | coding (1785/2148 nt) | fdhF | formate dehydrogenase‑H, selenopolypeptide subunit | |||||
| * | ? | CP009273 | = 3385461 | 344 (1.110) | 4 (0.020) | 4/212 | NT | 1.6% | noncoding (27/308 nt) | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences |
| ? | CP009273 | 3385736 = | 242 (1.030) | noncoding (302/308 nt) | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences | |||||
| * | ? | CP009273 | = 2897522 | 435 (1.400) | 4 (0.020) | 4/222 | NT | 1.2% | intergenic (+789/+584) | ygcE/queE | putative kinase/7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis |
| ? | CP009273 | 2897706 = | 325 (1.310) | intergenic (+973/+400) | ygcE/queE | putative kinase/7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis | |||||
| * | ? | CP009273 | = 2871149 | 440 (1.420) | 7 (0.030) | 7/244 | NT | 1.7% | intergenic (+172/+779) | iap/ygbF | aminopeptidase in alkaline phosphatase isozyme conversion/CRISPR adaptation ssRNA endonuclease |
| ? | CP009273 | 2871394 = | 401 (1.470) | intergenic (+417/+534) | iap/ygbF | aminopeptidase in alkaline phosphatase isozyme conversion/CRISPR adaptation ssRNA endonuclease | |||||
| * | ? | CP009273 | = 2811716 | 328 (1.060) | 9 (0.030) | 3/238 | NT | 3.7% | intergenic (‑83/+116) | argY/argV | tRNA‑Arg/tRNA‑Arg |
| ? | CP009273 | 2811851 = | 189 (0.710) | noncoding (58/77 nt) | argV | tRNA‑Arg | |||||
| * | ? | CP009273 | = 2811301 | 265 (0.850) | 8 (0.030) | 7/238 | NT | 3.7% | intergenic (‑82/+117) | argQ/argZ | tRNA‑Arg/tRNA‑Arg |
| ? | CP009273 | 2811851 = | 189 (0.710) | noncoding (58/77 nt) | argV | tRNA‑Arg | |||||
| * | ? | CP009273 | = 2811027 | 298 (0.960) | 3 (0.010) | 3/236 | NT | 1.4% | intergenic (‑165/+116) | yqaB/argQ | fructose‑1‑P and 6‑phosphogluconate phosphatase/tRNA‑Arg |
| ? | CP009273 | 2811575 = | 185 (0.700) | noncoding (59/77 nt) | argY | tRNA‑Arg | |||||
| * | ? | CP009273 | = 2293973 | 333 (1.070) | 3 (0.010) | 3/258 | NT | 0.89% | coding (2260/2487 nt) | napA | nitrate reductase, periplasmic, large subunit |
| ? | CP009273 | 2294280 = | 361 (1.250) | coding (1953/2487 nt) | napA | nitrate reductase, periplasmic, large subunit | |||||
| * | ? | CP009273 | = 2164909 | NA (NA) | 9 (0.030) | 7/278 | NT | 2.9% | intergenic (+30/+1) | insF1/gatR | IS3 transposase B/pseudogene, repressor for gat operon; interrupted by IS3; split galactitol utilization operon repressor, fragment 2; split galactitol utilization operon repressor, interrupted |
| ? | CP009273 | 3785425 = | 298 (0.960) | coding (487/1197 nt) | kbl | glycine C‑acetyltransferase | |||||