mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3180784 | NA (NA) | 7 (0.030) | 4/272 | NT | 1.00% | pseudogene (5/2445 nt) | yqiG | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein |
| ? | CP009273 | 3745853 = | 700 (3.450) | coding (502/975 nt) | yiaU | putative DNA‑binding transcriptional regulator | |||||
| * | ? | CP009273 | 3179457 = | NA (NA) | 5 (0.030) | 5/270 | NT | 0.71% | intergenic (+9/‑89) | yqiG/insC1 | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein/IS2 repressor TnpA |
| ? | CP009273 | = 3745860 | 711 (3.500) | coding (509/975 nt) | yiaU | putative DNA‑binding transcriptional regulator | |||||
| * | ? | CP009273 | 2369303 = | 180 (0.890) | 5 (0.030) | 3/266 | NT | 2.8% | coding (139/963 nt) | menC | O‑succinylbenzoyl‑CoA synthase |
| ? | CP009273 | 2507756 = | NA (NA) | intergenic (+33/‑54) | nupC/insL1 | nucleoside (except guanosine) transporter/IS186 transposase | |||||
| * | ? | CP009273 | 1874084 = | 240 (1.180) | 7 (0.040) | 3/270 | NT | 2.9% | coding (122/360 nt) | yeaR | DUF1971 family protein, nitrate‑inducible |
| ? | CP009273 | = 2509093 | NA (NA) | intergenic (+171/+29) | insL1/yfeA | IS186 transposase/putative diguanylate cyclase | |||||
| * | ? | CP009273 | 1874084 = | 240 (1.180) | 7 (0.040) | 5/270 | NT | 2.9% | coding (122/360 nt) | yeaR | DUF1971 family protein, nitrate‑inducible |
| ? | CP009273 | 2507755 = | NA (NA) | intergenic (+32/‑55) | nupC/insL1 | nucleoside (except guanosine) transporter/IS186 transposase | |||||
| * | ? | CP009273 | 361144 = | 6664 (32.850) | 40 (0.210) | 24/256 | NT | 0.63% | coding (600/1083 nt) | lacI | DNA‑binding transcriptional repressor |
| ? | CP009273 | = 361139 | 6465 (34.120) | coding (605/1083 nt) | lacI | DNA‑binding transcriptional repressor | |||||
| * | ? | CP009273 | 310940 = | 187 (0.920) | 7 (0.040) +TC |
6/270 | NT | 3.5% | intergenic (+1/‑62) | eaeH/insE1 | pseudogene, attaching and effacing protein homology;factor; Not classified/IS3 transposase A |
| ? | CP009273 | 3764627 = | 208 (1.030) | coding (113/1137 nt) | yibH | putative membrane fusion protein (MFP) component of efflux pump | |||||