New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 289472223 (0.750)13 (0.040) 11/274 NT 5.5% coding (158/699 nt) yagL CP4‑6 prophage; DNA‑binding protein
?CP009273 = 1463497 NA (NA)noncoding (1/1331 nt) IS2 repeat region

Only 100 of 277 total aligned reads displayed.

ATGAATCAATTGTCTGAGTAAACGTTGCTCTGAAACAACCTCTTTAATATCTACCTGCTCGATCACAACATGTTCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAATAGAGAGTGATTGCCAGCGATACTTTAACTGGTAAAGTAGTATTTT  >  CP009273/289324‑289620
                                                                                                                                                    |                                                                                                                                                    
atgaATCAATTGTCTGAGTAAACGTTGCTCTGAAACAACCTCTTTAATATCTACCTGCTCGATCACAACATGTTCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTAc                                                                                                                                                      <  2:5041555/149‑1 (MQ=255)
atgaATCAATTGTCTGAGTAAACGTTGCTCTGAAACAACCTCTTTAATATCTACCTGCTCGATCACAACATGTTCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTAc                                                                                                                                                      >  1:1302778/1‑149 (MQ=255)
      cAATTGTCTGAGTAAACGTTGCTCTGAAACAACCTCTTTAATATCTACCTGCTCGATCACAACATGTTCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCata                                                                                                                                                <  1:3004130/149‑1 (MQ=255)
        aTTGTCTGAGTAAACGTTGCTCTGAAACAACCTCTTTAATATCTACCTGCTCGATCACAACATGTTCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATg                                                                                                                                              >  1:2276363/1‑149 (MQ=255)
         ttGTCTGAGTAAACGTTGCTCTGAAACAACCTCTTTAATATCTACCTGCTCGATCACAACATGTTCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATgg                                                                                                                                             <  2:4721353/149‑1 (MQ=255)
           gTCTGAGTAAACGTTGCTCTGAAACAACCTCTTTAATATCTACCTGCTCGATCACAACATGTTCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGgtg                                                                                                                                           <  2:5126434/149‑1 (MQ=255)
           aggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGCTACTGCATATGgtg                                                                                                                                           <  1:2214760‑M1/16‑1 (MQ=255)
            tCTGAGTAAACGTTGCTCTGAAACAACCTCTTTAATATCTACCTGCTCGATCACAACATGTTCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGgtgt                                                                                                                                          >  1:633141/1‑149 (MQ=255)
              tGAGTAAACGTTGCTCTGAAACAACCTCTTTAATATCTACCTGCTCGATCACAACATGTTCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTaa                                                                                                                                        >  2:3171402/1‑149 (MQ=255)
              tGAGTAAACGTTGCTCTGAAACAACCTCTTTAATATCTACCTGCTCGATCACAACATGTTCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTaa                                                                                                                                        <  1:2572137/149‑1 (MQ=255)
                  tAAACGTTGCTCTGAAACAACCTCTTTAATATCTACCTGCTCGATCACAACATGTTCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTaaaaaa                                                                                                                                    >  2:2540163/1‑149 (MQ=255)
                   aaaCGTTGCTCTGAAACAACCTCTTTAATATCTACCTGCTCGATCACAACATGTTCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTaaaaaaa                                                                                                                                   <  1:3706143/149‑1 (MQ=255)
                   aaaCGTTGCTCTGAAACAACCTCTTTAATATCTACCTGCTCGATCACAACATGTTCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTaaaaaaa                                                                                                                                   <  1:102697/149‑1 (MQ=255)
                    aaCGTTGCTCTGAAACAACCTCTTTAATATCTACCTGCTCGATCACAACATGTTCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAAt                                                                                                                                  >  1:4965344/1‑149 (MQ=255)
                           ctctGAAACAACCTCTTTAATATCTACCTGCTCGATCACAACATGTTCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCa                                                                                                                           >  1:4155025/1‑149 (MQ=255)
                            tctGAAACAACCTCTTTAATATCTACCTGCTCGATCACAACATGTTCAGGTAGAATATTCAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACtagactggccccctgaatctccagacaa                                                                                                                          >  1:1169193‑M1/1‑121 (MQ=255)
                            tctGAAACAACCTCTTTAATATCTACCTGCTCGATCACAACATGTTCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCAt                                                                                                                          >  2:1108722/1‑149 (MQ=255)
                            tctGAAACAACCTCTTTAATATCTACCTGCTCGATCACAACATGTTCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCAt                                                                                                                          >  1:2645765/1‑149 (MQ=255)
                               gAAACAACCTCTTTAATATCTACCTGCTCGATCACAACATGTTCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTg                                                                                                                       >  1:3608957/1‑149 (MQ=255)
                                aaaCAACCTCTTTAATATCTACCTGCTCGATCACAACATGTTCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGa                                                                                                                      >  1:2513607/1‑149 (MQ=255)
                                aaaCAACCTCTTTAATATCTACCTGCTCGATCACAACATGTTCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGa                                                                                                                      <  2:299579/149‑1 (MQ=255)
                                 aacaacCTCTTTAATATCTACCTGCTCGATCACAACATGTTCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGAt                                                                                                                     >  2:686232/1‑149 (MQ=255)
                                  acaacCTCTTTAATATCTACCTGCTCGATCACAACATGTTCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGATg                                                                                                                    <  1:4661947/149‑1 (MQ=255)
                                  acaacCTCTTTAATATCTACCTGCTCGATCACAACATGTTCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGATg                                                                                                                    <  1:3136706/149‑1 (MQ=255)
                                   caacCTCTTTAATATCTACCTGCTCGATCACAACATGTTCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGAATCTGATGc                                                                                                                   >  1:4642204/1‑149 (MQ=255)
                                     acCTCTTTAATATCTACCTGCTCGATCACAACATGTTCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGATGCAc                                                                                                                 <  1:3777905/149‑1 (MQ=255)
                                       ctctTTAATATCTACCTGCTCGATCACAACATGTTCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGATGCACTc                                                                                                               <  1:2112979/149‑1 (MQ=255)
                                        tctTTAATATCTACCTGCTCGATCACAACATGTTCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGATGCACTcc                                                                                                              <  1:1819736/149‑1 (MQ=255)
                                         ctTTAATATCTACCTGCTCGATCACAACATGTTCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGATGCACTCCg                                                                                                             >  2:1582303/1‑149 (MQ=255)
                                          tttAATATCTACCTGCTCGATCACAACATGTTCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGATGCACTCCgg                                                                                                            <  1:785575/149‑1 (MQ=255)
                                          tttAATATCTACCTGCTCGATCACAACATGTTCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGATGCACTCCgg                                                                                                            >  2:3716801/1‑149 (MQ=255)
                                           ttAATATCTACCTGCTCGATCACAACATGTTCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGATGCACTCCGgt                                                                                                           <  2:1249243/149‑1 (MQ=255)
                                           ttAATATCTACCTGCTCGATCACAACATGTTCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGATGCACTCCGgt                                                                                                           <  1:1430948/149‑1 (MQ=255)
                                           ttAATATCTACCTGCTCGATCACAACATGTTCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGATGCACTCCGgt                                                                                                           <  1:1458901/149‑1 (MQ=255)
                                           ttAATATCTACCTGCTCGATCACAACATGTTCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGATGCACTCCGgt                                                                                                           <  1:3677159/149‑1 (MQ=255)
                                             aaTATCTACCTGCTCGATCACAACATGTTCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGATGCACTCCGgtgt                                                                                                         <  1:1901431/149‑1 (MQ=255)
                                              atatCTACCTGCTCGATCACAACATGTTCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGATGCACTCCGGTGTc                                                                                                        <  2:4155817/149‑1 (MQ=255)
                                              atatCTACCTGCTCGATCACAACATGTTCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGATGCACTCCGGTGTc                                                                                                        >  1:4528889/1‑149 (MQ=255)
                                                 tCTACCTGCTCGATCACAACATGTTCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGATGCACTCCGGTGTCATa                                                                                                     <  1:1502296/149‑1 (MQ=255)
                                                  cTACCTGCTCGATCACAACATGTTCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGATGCACTCCGGTGTCATaa                                                                                                    >  2:460352/1‑149 (MQ=255)
                                                    aCCTGCTCGATCACAACATGTTCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAat                                                                                                  <  2:1331490/149‑1 (MQ=255)
                                                      cTGCTCGATCACAACATGTTCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAatta                                                                                                <  2:2276363/149‑1 (MQ=255)
                                                        gCTCGATCACAACATGTTCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAattatt                                                                                              >  2:2049062/1‑149 (MQ=255)
                                                        gCTCGATCACAACATGTTCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAattatt                                                                                              <  1:1223045/149‑1 (MQ=255)
                                                            gATCACAACATGTTCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTAtttttt                                                                                          <  2:4548230/149‑1 (MQ=255)
                                                             aTCACAACATGTTCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTg                                                                                         >  1:4289760/1‑149 (MQ=255)
                                                               cacaACATGTTCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGAt                                                                                       <  2:2680222/149‑1 (MQ=255)
                                                                acaacaTGTTCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATa                                                                                      >  2:4138528/1‑149 (MQ=255)
                                                                   acaTGTTCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCt                                                                                   <  1:1704866/149‑1 (MQ=255)
                                                                      tGTTCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGaa                                                                                >  2:1367557/1‑149 (MQ=255)
                                                                        ttCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactattttttag                                                                              >  1:3798210‑M1/1‑77 (MQ=255)
                                                                        ttCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGaata                                                                              >  1:1355533/1‑149 (MQ=255)
                                                                           aGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATg                                                                           <  1:5142814/149‑1 (MQ=255)
                                                                             gTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTc                                                                         >  1:1151283/1‑149 (MQ=255)
                                                                               aGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCAt                                                                       >  1:2184863/1‑149 (MQ=255)
                                                                               aGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCAt                                                                       >  1:3266295/1‑149 (MQ=255)
                                                                                gAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACtagactggccccctgaatctccagacaaccaatatcacttaaataagagatagtcttaatactagtgtttagactagtca                                                                      >  2:3526111‑M1/1‑69 (MQ=255)
                                                                                 aaTATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCAttt                                                                     <  1:3507158/149‑1 (MQ=255)
                                                                                   tatTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTg                                                                   >  1:459308/1‑149 (MQ=255)
                                                                                       aaaTTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATa                                                               <  2:3121885/149‑1 (MQ=255)
                                                                                        aaTTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATaa                                                              >  1:863726/1‑149 (MQ=255)
                                                                                        aaTTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATaa                                                              <  2:4308275/149‑1 (MQ=255)
                                                                                               ggCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAaacaa                                                       >  1:2897839/1‑149 (MQ=255)
                                                                                                 cATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAAcc                                                     >  1:20487/1‑149 (MQ=255)
                                                                                                  atatCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTTATACCTGAATAATGTCATTTTGCATAAAAAACAACCa                                                    >  2:2753161/1‑149 (MQ=255)
                                                                                                   tatCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattga                                                   >  2:1903134‑M1/1‑50 (MQ=255)
                                                                                                    atCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATACGGTGTAAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCaaa                                                  >  2:2903191/1‑149 (MQ=255)
                                                                                                       tcAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtc                                               <  1:1775827‑M1/149‑104 (MQ=255)
                                                                                                         aGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAATag                                             >  1:2475433/1‑149 (MQ=255)
                                                                                                         aGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAATag                                             >  1:4689699/1‑149 (MQ=255)
                                                                                                         aGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAATag                                             <  2:3220344/149‑1 (MQ=255)
                                                                                                         aGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAATag                                             >  1:4450225/1‑149 (MQ=255)
                                                                                                          gCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAATaga                                            <  2:2422552/149‑1 (MQ=255)
                                                                                                            aaGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGAATAAAAAACAACCAAAAATagaga                                          >  2:2245571/1‑149 (MQ=255)
                                                                                                               tgagtgaTGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAATAGAGAGTg                                       >  2:3489519/1‑149 (MQ=255)
                                                                                                               tgagtgaTGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAATAGAGAGTg                                       >  1:2265018/1‑149 (MQ=255)
                                                                                                               tgagtgaTGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAATAGAGAGTg                                       >  1:3294326/1‑149 (MQ=255)
                                                                                                                gagtgaTGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAATAGAGAGTGa                                      <  2:833906/149‑1 (MQ=255)
                                                                                                                  gtgaTGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAATAGAGAGTGAtt                                    >  2:4434984/1‑149 (MQ=255)
                                                                                                                       gatCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAATAGAGAGTGATTGCCAg                               >  1:1275029/1‑149 (MQ=255)
                                                                                                                            gTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAATAGAGAGTGATTGCCAGCGATa                          >  2:5169622/1‑149 (MQ=255)
                                                                                                                             tAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAATAGAGAGTGATTGCCAGCGATAc                         <  2:3951824/149‑1 (MQ=255)
                                                                                                                              aaTGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAATAGAGAGTGATTGCCAGCGATACt                        >  2:1498037/1‑149 (MQ=255)
                                                                                                                              aaTGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAATAGAGAGTGATTGCCAGCGATACt                        >  2:4095263/1‑149 (MQ=255)
                                                                                                                               aTGCGTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAATAGAGAGTGATTGCCAGCGATACtt                       <  2:4963069/149‑1 (MQ=255)
                                                                                                                                  cTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAATAGAGAGTGATTGCCAGCGATACTTTaa                    >  1:3517743/1‑149 (MQ=255)
                                                                                                                                    ttCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAATAGAGAGTGATTGCCAGCGATACTTTAACt                  <  1:1527249/149‑1 (MQ=255)
                                                                                                                                        tGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAATAGAGAGTGATTGCCAGCGATACTTTAACTGGTa              <  1:2739928/149‑1 (MQ=255)
                                                                                                                                           tGTTCGCTACtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacag           <  2:1165226‑M1/149‑140 (MQ=255)
                                                                                                                                           atccaGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAATAGAGAGTGATTGCCAGCGATACTTTAACTGGTAAag           <  1:4439540‑M1/144‑1 (MQ=255)
                                                                                                                                            gTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAATAGAGAGTGATTGCCAGCGATACTTTAACTGGTAAagt          >  2:3036026/1‑149 (MQ=255)
                                                                                                                                                 cTACTTCATATTGTGTAAAAAATTGAACGGATCTGATGCACTCCGGTGTAATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAATAGAGAGTGATTGCCAGCGATACTTTAACTGGTAAAGTAGTAt     <  1:3996642/149‑1 (MQ=255)
                                                                                                                                                 cTACTGCATATGGTGTAAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAATAGAGAGTGATTGCCAGCGATACTTTAACTGGTAAAGTAGTAt     <  1:3996832/149‑1 (MQ=255)
                                                                                                                                                 cTACTGCATATGGTGTAAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAATAGAGAGTGATTGCCAGCGATACTTTAACTGGTAAAGTAGTAt     <  1:4864812/149‑1 (MQ=255)
                                                                                                                                                 cTACTGCATATGGTGTAAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAATAGAGAGTGATTGCCAGCGATACTTTAACTGGTAAAGTAGTAt     >  1:5036670/1‑149 (MQ=255)
                                                                                                                                                  tactatactgtccccctgaatctccagacaaccaatatctcttatattagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgttgtcttagggccgtagaaacgcagacggcgtaccacacaggaaaaga    <  2:584555‑M1/149‑147 (MQ=255)
                                                                                                                                                   actagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagat   <  2:3315730‑M1/149‑148 (MQ=255)
                                                                                                                                                   actagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagat   <  1:2888784‑M1/149‑148 (MQ=255)
                                                                                                                                                   actagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagat   >  2:3787818‑M1/1‑2 (MQ=255)
                                                                                                                                                   actagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagat   >  2:1790966‑M1/1‑2 (MQ=255)
                                                                                                                                                    |                                                                                                                                                    
ATGAATCAATTGTCTGAGTAAACGTTGCTCTGAAACAACCTCTTTAATATCTACCTGCTCGATCACAACATGTTCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAATAGAGAGTGATTGCCAGCGATACTTTAACTGGTAAAGTAGTATTTT  >  CP009273/289324‑289620

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.