mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 15 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3179455 = | NA (NA) | 4 (0.010) | 3/278 | NT | 1.1% | intergenic (+7/‑91) | yqiG/insC1 | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein/IS2 repressor TnpA |
| ? | CP009273 | = 3761136 | 345 (1.130) | pseudogene (556/945 nt) | rhsJ | Rhs‑family protein | |||||
| * | ? | CP009273 | = 2811301 | 244 (0.800) | 5 (0.020) | 4/238 | NT | 2.3% | intergenic (‑82/+117) | argQ/argZ | tRNA‑Arg/tRNA‑Arg |
| ? | CP009273 | 2811851 = | 220 (0.850) | noncoding (58/77 nt) | argV | tRNA‑Arg | |||||
| * | ? | CP009273 | = 2509092 | NA (NA) | 9 (0.030) | 6/272 | NT | 2.9% | intergenic (+170/+30) | insL1/yfeA | IS186 transposase/putative diguanylate cyclase |
| ? | CP009273 | 2948450 = | 313 (1.030) | coding (913/3543 nt) | recB | exonuclease V (RecBCD complex), beta subunit | |||||
| * | ? | CP009273 | 2507756 = | NA (NA) | 5 (0.020) | 4/272 | NT | 1.7% | intergenic (+33/‑54) | nupC/insL1 | nucleoside (except guanosine) transporter/IS186 transposase |
| ? | CP009273 | = 4533433 | 290 (0.950) | coding (502/549 nt) | fimA | major type 1 subunit fimbrin (pilin) | |||||
| * | ? | CP009273 | 2507756 = | NA (NA) | 8 (0.030) | 6/272 | NT | 2.8% | intergenic (+33/‑54) | nupC/insL1 | nucleoside (except guanosine) transporter/IS186 transposase |
| ? | CP009273 | 4533422 = | 288 (0.950) | coding (491/549 nt) | fimA | major type 1 subunit fimbrin (pilin) | |||||
| * | ? | CP009273 | = 2369314 | 271 (0.890) | 7 (0.020) | 5/270 | NT | 2.6% | coding (128/963 nt) | menC | O‑succinylbenzoyl‑CoA synthase |
| ? | CP009273 | = 2509092 | NA (NA) | intergenic (+170/+30) | insL1/yfeA | IS186 transposase/putative diguanylate cyclase | |||||
| * | ? | CP009273 | = 2164908 | NA (NA) | 13 (0.040) | 12/276 | NT | 4.0% | intergenic (+29/+2) | insF1/gatR | IS3 transposase B/pseudogene, repressor for gat operon; interrupted by IS3; split galactitol utilization operon repressor, fragment 2; split galactitol utilization operon repressor, interrupted |
| ? | CP009273 | = 4530118 | 315 (1.040) | intergenic (‑800/‑656) | nanC/fimB | N‑acetylnuraminic acid outer membrane channel protein/tyrosine recombinase/inversion of on/off regulator of fimA | |||||
| * | ? | CP009273 | = 1874094 | 280 (0.920) | 12 (0.040) | 8/272 | NT | 4.2% | coding (112/360 nt) | yeaR | DUF1971 family protein, nitrate‑inducible |
| ? | CP009273 | = 2509092 | NA (NA) | intergenic (+170/+30) | insL1/yfeA | IS186 transposase/putative diguanylate cyclase | |||||
| * | ? | CP009273 | = 1874094 | 280 (0.920) | 7 (0.020) | 6/272 | NT | 2.5% | coding (112/360 nt) | yeaR | DUF1971 family protein, nitrate‑inducible |
| ? | CP009273 | 2507756 = | NA (NA) | intergenic (+33/‑54) | nupC/insL1 | nucleoside (except guanosine) transporter/IS186 transposase | |||||
| * | ? | CP009273 | 1874084 = | 287 (0.940) | 7 (0.020) | 5/274 | NT | 2.4% | coding (122/360 nt) | yeaR | DUF1971 family protein, nitrate‑inducible |
| ? | CP009273 | = 2509093 | NA (NA) | intergenic (+171/+29) | insL1/yfeA | IS186 transposase/putative diguanylate cyclase | |||||