mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 12 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4618548 | 358 (1.110) | 3 (0.010) | 3/246 | NT | 0.99% | noncoding (37/150 nt) | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site |
| ? | CP009273 | 4618665 = | 283 (0.990) | intergenic (+301/+7) | nadR/yjjK | trifunctional protein: nicotinamide mononucleotide adenylyltransferase, ribosylnicotinamide kinase, transcriptional repressor/putative transporter subunit of ABC superfamily: ATP‑binding component | |||||
| * | ? | CP009273 | 4615996 = | 360 (1.110) | 18 (0.060) | 11/264 | NT | 5.0% | coding (268/1383 nt) | radA | DNA repair protein |
| ? | CP009273 | = 4615992 | 346 (1.130) | coding (264/1383 nt) | radA | DNA repair protein | |||||
| * | ? | CP009273 | 4532499 = | 294 (0.910) | 6 (0.020) | 4/260 | NT | 2.1% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | CP009273 | 4532813 = | 296 (0.980) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | CP009273 | 2989720 = | NA (NA) | 6 (0.020) | 6/278 | NT | 1.8% | noncoding (1331/1331 nt) | IS2 | repeat region |
| ? | CP009273 | 3360461 = | 325 (1.010) | coding (177/717 nt) | yhcF | putative transcriptional regulator | |||||
| * | ? | CP009273 | = 2965755 | 299 (0.920) | 4 (0.010) | 3/254 | NT | 1.4% | coding (800/1041 nt) | tas | putative NADP(H)‑dependent aldo‑keto reductase |
| ? | CP009273 | = 2965743 | 274 (0.930) | coding (788/1041 nt) | tas | putative NADP(H)‑dependent aldo‑keto reductase | |||||
| * | ? | CP009273 | = 2735066 | 295 (0.910) | 5 (0.020) | 3/278 | NT | 1.7% | coding (348/366 nt) | yfiL | lipoprotein |
| ? | CP009273 | = 2991050 | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||
| * | ? | CP009273 | = 1282837 | 278 (0.860) | 3 (0.010) | 3/238 | NT | 1.4% | intergenic (‑53/+157) | tyrV/tyrT | tRNA‑Tyr/tRNA‑Tyr |
| ? | CP009273 | 1283013 = | 192 (0.690) | noncoding (66/85 nt) | tyrT | tRNA‑Tyr | |||||
| * | ? | CP009273 | 970318 = | 339 (1.050) | 4 (0.010) | 3/260 | NT | 1.3% | coding (544/1323 nt) | mukF | chromosome condensin MukBEF, kleisin‑like subunit, binds calcium |
| ? | CP009273 | = 970314 | 315 (1.040) | coding (540/1323 nt) | mukF | chromosome condensin MukBEF, kleisin‑like subunit, binds calcium | |||||
| * | ? | CP009273 | = 776902 | 227 (0.700) | 8 (0.030) | 6/238 | NT | 3.9% | intergenic (+2/‑131) | lysZ/lysQ | tRNA‑Lys/tRNA‑Lys |
| ? | CP009273 | 2514846 = | 198 (0.720) | noncoding (574/1345 nt) | IS186 | repeat region | |||||
| * | ? | CP009273 | = 361823 | 308 (0.950) | 14 (0.050) +TTAATTAA |
11/262 | NT | 4.7% | coding (831/834 nt) | mhpR | mhp operon transcriptional activator |
| ? | CP009273 | 4033991 = | 296 (0.920) | noncoding (115/120 nt) | rrfA | 5S ribosomal RNA of rrnA operon | |||||