mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3713993 = | 193 (0.800) | 4 (0.020) | 4/278 | NT | 2.0% | intergenic (‑1/‑47) | mokA/insJ | pseudogene, overlapping regulatory peptide, enables hokB; completely contained in another CDS/IS150 transposase A |
| ? | CP009273 | = 3714904 | 207 (0.860) | coding (347/852 nt) | insK | IS150 transposase B | |||||
| * | ? | CP009273 | = 2871150 | 306 (1.270) | 5 (0.020) | 5/242 | NT | 1.8% | intergenic (+173/+778) | iap/ygbF | aminopeptidase in alkaline phosphatase isozyme conversion/CRISPR adaptation ssRNA endonuclease |
| ? | CP009273 | 2871456 = | 276 (1.320) | intergenic (+479/+472) | iap/ygbF | aminopeptidase in alkaline phosphatase isozyme conversion/CRISPR adaptation ssRNA endonuclease | |||||
| * | ? | CP009273 | = 2164908 | NA (NA) | 4 (0.020) | 4/276 | NT | 2.1% | intergenic (+29/+2) | insF1/gatR | IS3 transposase B/pseudogene, repressor for gat operon; interrupted by IS3; split galactitol utilization operon repressor, fragment 2; split galactitol utilization operon repressor, interrupted |
| ? | CP009273 | 3763272 = | 185 (0.770) | intergenic (+129/‑36) | yibV/yibU | pseudogene/pseudogene, H repeat‑associated protein | |||||
| * | ? | CP009273 | = 1384980 | 221 (0.930) | 5 (0.020) | 4/274 | NT | 2.2% | intergenic (‑125/+2) | mpaA/ymjC | murein peptide amidase A/pseudogene |
| ? | CP009273 | = 2063752 | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||
| * | ? | CP009273 | = 776902 | 169 (0.700) | 7 (0.030) | 7/238 | NT | 4.7% | intergenic (+2/‑131) | lysZ/lysQ | tRNA‑Lys/tRNA‑Lys |
| ? | CP009273 | 777267 = | 137 (0.660) | intergenic (+159/‑274) | lysQ/nadA | tRNA‑Lys/quinolinate synthase, subunit A | |||||
| * | ? | CP009273 | 361723 = | 40940 (169.920) | 8 (0.040) +32 bp |
5/214 | NT | 0.031% | coding (21/1083 nt) | lacI | DNA‑binding transcriptional repressor |
| ? | CP009273 | = 361759 | 26152 (108.540) | intergenic (‑16/+61) | lacI/mhpR | DNA‑binding transcriptional repressor/mhp operon transcriptional activator | |||||
| * | ? | CP009273 | 361144 = | 60699 (251.930) | 15 (0.070) | 12/260 | NT | 0.026% | coding (600/1083 nt) | lacI | DNA‑binding transcriptional repressor |
| ? | CP009273 | = 361139 | 58470 (259.610) | coding (605/1083 nt) | lacI | DNA‑binding transcriptional repressor | |||||