mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 5,144 | G→A | 87.8% | intergenic (+124/‑90) | thrC → / → yaaX | L‑threonine synthase/DUF2502 family putative periplasmic protein |
| RA | 10,444 | G→T | 100% | F17L (TTC→TTA) | satP ← | succinate‑acetate transporter |
| RA | 12,901 | G→A | 100% | D247N (GAT→AAT) | dnaK → | chaperone Hsp70, with co‑chaperone DnaJ |
| RA | 24,720 | A→C | 6.4% | Y777S (TAC→TCC) | ileS → | isoleucyl‑tRNA synthetase |
| RA | 25,013 | G→T | 15.4% | D875Y (GAC→TAC) | ileS → | isoleucyl‑tRNA synthetase |
| RA | 25,546 | G→T | 31.7% | D114Y (GAC→TAC) | lspA → | prolipoprotein signal peptidase (signal peptidase II) |
| RA | 29,139 | G→T | 84.2% | G256C (GGT→TGT) | dapB → | dihydrodipicolinate reductase |
| RA | 32,178 | C→A | 7.1% | N454K (AAC→AAA) | carB → | carbamoyl‑phosphate synthase large subunit |
| RA | 45,406 | C→A | 6.3% | G409G (GGC→GGA) | fixC → | putative oxidoreductase |
| RA | 49,840 | G→T | 61.7% | A6A (GCG→GCT) | folA → | dihydrofolate reductase |
| RA | 51,607 | C→A | 13.1% | intergenic (‑1/+2) | apaG ← / ← rsmA | protein associated with Co2+ and Mg2+ efflux/16S rRNA m(6)A1518, m(6)A1519 dimethyltransferase, SAM‑dependent |
| RA | 54,650 | C→T | 8.2% | S18N (AGT→AAT) | surA ← | peptidyl‑prolyl cis‑trans isomerase (PPIase) |
| RA | 55,590 | G→T | 37.1% | T507K (ACG→AAG) | lptD ← | LPS assembly OM complex LptDE, beta‑barrel component |
| RA | 56,677 | G→T | 80.0% | R145S (CGC→AGC) | lptD ← | LPS assembly OM complex LptDE, beta‑barrel component |
| RA | 72,337 | C→A | 9.0% | D484Y (GAC→TAC) | sgrR ← | transcriptional DNA‑binding transcriptional activator of sgrS sRNA |
| RA | 72,392 | G→T | 9.8% | F465L (TTC→TTA) | sgrR ← | transcriptional DNA‑binding transcriptional activator of sgrS sRNA |
| RA | 79,882 | G→T | 21.9% | V45V (GTC→GTA) | leuA ← | 2‑isopropylmalate synthase |
| RA | 80,123 | C→T | 31.7% | G25S (GGC→AGC) | leuL ← | leu operon leader peptide |
| RA | 81,562 | C→A | 40.5% | I236I (ATC→ATA) | leuO → | global transcription factor |
| RA | 89,009 | G→T | 6.8% | A370A (GCG→GCT) | ftsI → | transpeptidase involved in septal peptidoglycan synthesis (penicillin‑binding protein 3) |
| RA | 97,521 | C→A | 64.7% | A90A (GCC→GCA) | murC → | UDP‑N‑acetylmuramate:L‑alanine ligase |
| RA | 103,467 | G→T | 72.6% | D142Y (GAT→TAT) | lpxC → | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase |
| RA | 104,561 | G→T | 74.3% | A124S (GCG→TCG) | secM → | regulator of secA translation |
| RA | 104,948 | A→T | 16.3% | E61D (GAA→GAT) | secA → | preprotein translocase subunit, ATPase |
| RA | 109,800 | A→T | 5.0% | intergenic (‑94/‑131) | coaE ← / → guaC | dephospho‑CoA kinase/GMP reductase |
| RA | 118,873 | G→T | 100% | D99Y (GAC→TAC) | pdhR → | pyruvate dehydrogenase complex repressor; autorepressor |
| RA | 123,870 | G→T | 12.7% | P563P (CCG→CCT) | aceF → | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 |
| RA | 132,632 | A→T | 20.8% | V107E (GTG→GAG) | speE ← | spermidine synthase (putrescine aminopropyltransferase) |
| RA | 142,460 | T→A | 92.2% | F298Y (TTC→TAC) | yadE → | putative polysaccharide deacetylase lipoprotein |
| RA | 147,946 | G→T | 12.2% | I47I (ATC→ATA) | yadK ← | putative fimbrial‑like adhesin protein |
| RA | 153,472 | G→T | 90.7% | intergenic (‑102/+268) | yadN ← / ← folK | putative fimbrial‑like adhesin protein/2‑amino‑4‑hydroxy‑6‑hydroxymethyldihyropteridine pyrophosphokinase |
| RA | 157,178 | C→A | 14.9% | intergenic (‑87/+91) | dksA ← / ← sfsA | transcriptional regulator of rRNA transcription, DnaK suppressor protein/sugar fermentation stimulation protein A |
| RA | 158,287 | C→A | 90.2% | D78Y (GAC→TAC) | ligT ← | 2'‑5' RNA ligase |
| RA | 161,068 | A→C | 32.0% | intergenic (+47/‑149) | hrpB → / → mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| RA | 169,148 | G→T | 8.8% | A400A (GCG→GCT) | fhuB → | fused iron‑hydroxamate transporter subunits of ABC superfamily: membrane components |
| RA | 170,868 | C→A | 11.1% | V168F (GTT→TTT) | hemL ← | glutamate‑1‑semialdehyde aminotransferase (aminomutase) |
| RA | 192,769 | A→C | 7.3% | V202V (GTA→GTC) | cdsA → | CDP‑diglyceride synthase |
| RA | 198,022 | C→A | 19.6% | R189S (CGT→AGT) | lpxD → | UDP‑3‑O‑(3‑hydroxymyristoyl)‑glucosamine N‑acyltransferase |
| RA | 199,351 | C→A | 9.7% | T102K (ACA→AAA) | lpxA → | UDP‑N‑acetylglucosamine acetyltransferase |
| RA | 209,413 | A→T | 7.3% | Q199L (CAG→CTG) | tilS → | tRNA(Ile)‑lysidine synthetase |
| RA | 210,546 | C→A | 18.4% | V23F (GTT→TTT) | yaeP ← | UPF0253 family protein |
| RA | 230,579 | C→T | 100% | E231K (GAA→AAA) | gloB ← | hydroxyacylglutathione hydrolase |
| RA | 232,860 | G→T | 93.0% | D103Y (GAT→TAT) | dnaQ → | DNA polymerase III epsilon subunit |
| RA | 234,984 | G→T | 16.2% | I80I (ATC→ATA) | ykfM ← | lethality reduction protein, putative inner membrane protein |
| RA | 234,990 | G→T | 11.7% | F78L (TTC→TTA) | ykfM ← | lethality reduction protein, putative inner membrane protein |
| RA | 234,994 | G→T | 13.5% | S77* (TCA→TAA) | ykfM ← | lethality reduction protein, putative inner membrane protein |
| RA | 235,010 | G→T | 15.6% | L72I (CTT→ATT) | ykfM ← | lethality reduction protein, putative inner membrane protein |
| RA | 235,019 | C→A | 15.5% | V69L (GTA→TTA) | ykfM ← | lethality reduction protein, putative inner membrane protein |
| RA | 235,022 | G→T | 24.3% | H68N (CAT→AAT) | ykfM ← | lethality reduction protein, putative inner membrane protein |
| RA | 238,195 | G→T | 83.3% | V532V (GTC→GTA) | fadE ← | acyl coenzyme A dehydrogenase |
| RA | 255,882 | A→T | 23.9% | intergenic (‑71/‑217) | phoE ← / → proB | outer membrane phosphoporin protein E/gamma‑glutamate kinase |
| RA | 274,735 | A→T | 27.1% | pseudogene (138/348 nt) | afuB ← | pseudogene, CP4‑6 prophage; ABC transporter permease family;Phage or Prophage Related |
| RA | 289,058 | C→T | 7.7% | G191E (GGA→GAA) | yagL ← | CP4‑6 prophage; DNA‑binding protein |
| RA | 295,695 | T→G | 18.5% | E317D (GAA→GAC) | paoC ← | PaoABC aldehyde oxidoreductase, Moco‑containing subunit |
| RA | 312,532 | G→A | 91.5% | pseudogene (349/684 nt) | ykgA ← | pseudogene, AraC family;putative regulator; Not classified; putative ARAC‑type regulatory protein |
| RA | 320,920 | G→A | 83.5% | S52S (AGC→AGT) | ykgH ← | putative inner membrane protein |
| RA | 321,223 | C→A | 37.9% | intergenic (‑148/+65) | ykgH ← / ← betA | putative inner membrane protein/choline dehydrogenase, a flavoprotein |
| RA | 327,515 | G→T | 24.0% | intergenic (+308/‑567) | betT → / → yahA | choline transporter of high affinity/c‑di‑GMP‑specific phosphodiesterase |
| RA | 334,250 | G→T | 10.6% | R72L (CGT→CTT) | yahG → | DUF1116 family protein |
| RA | 344,800 | G→T | 29.7% | E136D (GAG→GAT) | prpB → | 2‑methylisocitrate lyase |
| RA | 353,517 | T→C | 7.0% | G295G (GGA→GGG) | cynR ← | transcriptional activator of cyn operon; autorepressor |
| RA | 353,537 | T→C | 5.2% | K289E (AAA→GAA) | cynR ← | transcriptional activator of cyn operon; autorepressor |
| RA | 360,752 | A→G | 100% | V331A (GTG→GCG) | lacI ← | DNA‑binding transcriptional repressor |
| JC | 361,139 | +GCCA | 9.2% | coding (605/1083 nt) | lacI ← | DNA‑binding transcriptional repressor |
| RA | 361,806 | G→A | 100% | intergenic (‑63/+14) | lacI ← / ← mhpR | DNA‑binding transcriptional repressor/mhp operon transcriptional activator |
| RA | 362,159 | G→T | 85.4% | I165I (ATC→ATA) | mhpR ← | mhp operon transcriptional activator |
| RA | 376,532 | C→A | 15.3% | pseudogene (184/416 nt) | yaiX ← | pseudogene, interrupted by IS2A, acetyltransferase homolog; nonfunctional; interruped by IS2; putative transferase |
| RA | 380,508 | C→T | 6.6% | intergenic (‑436/‑180) | yaiS ← / → tauA | putative PIG‑L family deacetylase/taurine transporter subunit |
| RA | 389,725 | G→T | 11.8% | pseudogene (1300/1449 nt) | yaiT → | pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein |
| RA | 396,883 | A→G | 32.7% | Q14Q (CAA→CAG) | iraP → | anti‑RssB factor, RpoS stabilzer during Pi starvation; anti‑adapter protein |
| RA | 400,819 | A→C | 8.8% | V94V (GTT→GTG) | proC ← | pyrroline‑5‑carboxylate reductase, NAD(P)‑binding |
| RA | 402,340 | G→T | 91.7% | V160V (GTG→GTT) | aroL → | shikimate kinase II |
| RA | 406,075 | C→A | 100% | P159Q (CCG→CAG) | mak → | manno(fructo)kinase |
| RA | 411,027 | G→T | 94.0% | L61L (CTC→CTA) | sbcC ← | exonuclease, dsDNA, ATP‑dependent |
| RA | 419,663 | G→T | 11.2% | E564* (GAA→TAA) | malZ → | maltodextrin glucosidase |
| RA | 421,799 | C→A | 29.2% | I69I (ATC→ATA) | tgt → | tRNA‑guanine transglycosylase |
| RA | 424,725 | A→C | 6.2% | A541A (GCA→GCC) | secD → | SecYEG protein translocase auxillary subunit |
| RA | 433,551 | G→T | 93.3% | S14Y (TCC→TAC) | yajO ← | 2‑carboxybenzaldehyde reductase |
| RA | 434,663 | A→C | 95.0% | I324S (ATC→AGC) | dxs ← | 1‑deoxyxylulose‑5‑phosphate synthase, thiamine triphosphate‑binding, FAD‑requiring |
| RA | 435,336 | G→T | 80.3% | Q100K (CAG→AAG) | dxs ← | 1‑deoxyxylulose‑5‑phosphate synthase, thiamine triphosphate‑binding, FAD‑requiring |
| RA | 437,672 | T→A | 83.6% | V223E (GTG→GAG) | thiI → | tRNA s(4)U8 sulfurtransferase |
| RA | 442,849 | C→A | 5.9% | A105S (GCG→TCG) | cyoE ← | protoheme IX farnesyltransferase |
| RA | 444,489 | G→A | 64.7% | R537C (CGT→TGT) | cyoB ← | cytochrome o ubiquinol oxidase subunit I |
| RA | 456,298 | T→A | 66.7% | L652Q (CTG→CAG) | lon → | DNA‑binding ATP‑dependent protease La |
| RA | 456,588 | G→T | 100% | D749Y (GAC→TAC) | lon → | DNA‑binding ATP‑dependent protease La |
| RA | 461,641 | G→A | 13.0% | V376V (GTC→GTT) | ybaE ← | putative ABC superfamily transporter periplasmic‑binding protein |
| RA | 474,138 | G→T | 88.1% | intergenic (‑65/+99) | ylaB ← / ← ylaC | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase/DUF1449 family inner membrane protein |
| RA | 475,805 | C→A | 65.6% | A120A (GCG→GCT) | tomB ← | Hha toxicity attenuator; conjugation‑related protein |
| RA | 479,244 | C→A | 84.5% | A206S (GCC→TCC) | acrB ← | multidrug efflux system protein |
| RA | 480,820 | C→T | 94.9% | D86N (GAC→AAC) | acrA ← | multidrug efflux system |
| RA | 481,667 | G→A | 67.0% | A151T (GCG→ACG) | acrR → | transcriptional repressor |
| RA | 486,169 | A→T | 6.9% | F34I (TTC→ATC) | priC ← | primosomal replication protein N'' |
| RA | 495,504 | A→T | 16.3% | intergenic (‑75/‑77) | aes ← / → gsk | acetyl esterase/inosine/guanosine kinase |
| RA | 501,656 | C→A | 5.3% | F429L (TTC→TTA) | ushA → | bifunctional UDP‑sugar hydrolase/5'‑nucleotidase |
| RA | 507,331 | G→A | 17.3% | D79N (GAT→AAT) | glsA → | glutaminase 1 |
| RA | 509,545 | G→T | 9.3% | E33* (GAA→TAA) | cueR → | copper‑responsive regulon transcriptional regulator |
| RA | 523,244 | G→T | 20.4% | E70* (GAA→TAA) | ybbC → | putative immunity protein |
| RA | 530,466 | C→A | 93.2% | F365L (TTC→TTA) | gcl → | glyoxylate carboligase |
| RA | 533,530 | G→T | 8.7% | D148Y (GAT→TAT) | ybbW → | putative allantoin transporter |
| RA | 542,200 | Δ1 bp | 88.7% | coding (65/1668 nt) | fdrA → | putative NAD(P)‑binding acyl‑CoA synthetase |
| RA | 544,713 | G→T | 20.0% | D301Y (GAT→TAT) | ylbE → | NO‑induced DUF1116 protein |
| RA | 546,491 | G→T | 100% | V199V (GTG→GTT) | ybcF → | putative carbonate kinase |
| RA | 549,397 | G→T | 93.2% | intergenic (‑1/+2) | lpxH ← / ← ppiB | UDP‑2,3‑diacylglucosamine pyrophosphohydrolase/peptidyl‑prolyl cis‑trans isomerase B (rotamase B) |
| RA | 553,502 | C→A | 9.6% | intergenic (‑305/‑166) | folD ← / → sfmA | bifunctional 5,10‑methylene‑tetrahydrofolate dehydrogenase/ 5,10‑methylene‑tetrahydrofolate cyclohydrolase/FimA homolog |
| RA | 565,317 | G→A | 7.4% | A320A (GCG→GCA) | ybcK → | DLP12 prophage; putative recombinase |
| RA | 576,998 | G→T | 37.4% | pseudogene (189/309 nt) | aaaD → | pseudogene; DLP12 prophage; tail fiber assembly protein family;Phage or Prophage Related |
| RA | 579,710 | G→A | 11.9% | A192T (GCA→ACA) | appY → | global transcriptional activator; DLP12 prophage |
| RA | 581,203 | A→T | 65.5% | intergenic (‑114/‑310) | ompT ← / → pauD | DLP12 prophage; outer membrane protease VII (outer membrane protein 3b)/tRNA‑OTHER |
| RA | 583,341 | T→G | 91.4% | S33R (AGT→CGT) | ybcH ← | PRK09936 family protein |
| RA | 607,931 | G→A | 91.5% | S7F (TCC→TTC) | fepA ← | iron‑enterobactin outer membrane transporter |
| RA | 625,364 | G→T | 74.7% | G5G (GGG→GGT) | cstA → | carbon starvation protein involved in peptide utilization; APC peptide transporter family protein |
| RA | 630,088 | G→T | 23.9% | A349A (GCG→GCT) | ybdL → | methionine aminotransferase, PLP‑dependent |
| RA | 632,013 | T→G | 7.3% | K5Q (AAA→CAA) | ybdN ← | PAPS reductase‑like domain protein |
| RA | 632,406 | T→A | 11.9% | K223N (AAA→AAT) | ybdO ← | putative DNA‑binding transcriptional regulator |
| RA | 639,231 | G→A | 93.6% | L65F (CTT→TTT) | rnk ← | regulator of nucleoside diphosphate kinase |
| RA | 641,886 | C→A | 12.7% | E51* (GAG→TAG) | citT ← | citrate:succinate antiporter |
| RA | 645,559 | C→A | 6.3% | G130C (GGC→TGC) | citE ← | citrate lyase, citryl‑ACP lyase (beta) subunit |
| RA | 647,422 | G→T | 83.9% | intergenic (‑110/‑269) | citC ← / → citA | [citrate [pro‑3S]‑lyase] ligase/sensory histidine kinase in two‑component regulatory system with CitB |
| RA | 647,509 | T→C | 69.8% | intergenic (‑197/‑182) | citC ← / → citA | [citrate [pro‑3S]‑lyase] ligase/sensory histidine kinase in two‑component regulatory system with CitB |
| RA | 648,056 | C→A | 93.5% | F122L (TTC→TTA) | citA → | sensory histidine kinase in two‑component regulatory system with CitB |
| RA | 652,865 | Δ1 bp | 88.6% | coding (118/210 nt) | cspE → | constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein |
| RA | 662,108 | A→T | 64.7% | V522V (GTT→GTA) | mrdA ← | transpeptidase involved in peptidoglycan synthesis (penicillin‑binding protein 2) |
| RA | 662,631 | C→A | 92.9% | R348L (CGC→CTC) | mrdA ← | transpeptidase involved in peptidoglycan synthesis (penicillin‑binding protein 2) |
| RA | 692,834 | A→T | 8.7% | intergenic (‑245/+135) | metT ← / ← asnB | tRNA‑Met/asparagine synthetase B |
| RA | 702,512 | A→G | 7.4% | T322A (ACC→GCC) | glnS → | glutamyl‑tRNA synthetase |
| RA | 705,588 | C→A | 87.8% | intergenic (+16/+68) | chiQ → / ← fur | chitosugar‑induced verified lipoprotein/ferric iron uptake regulon transcriptional repressor; autorepressor |
| RA | 714,647 | A→T | 5.6% | C424S (TGT→AGT) | speF ← | ornithine decarboxylase isozyme, inducible |
| RA | 724,813 | A→T | 69.3% | intergenic (+17/‑226) | ybfA → / → rhsC | DUF2517 family protein/Rhs family putative polymorphic toxin |
| RA | 733,809 | G→T | 6.4% | E88* (GAG→TAG) | ybfD → | H repeat‑associated putative transposase |
| RA | 754,572 | G→T | 94.7% | E137D (GAG→GAT) | sucA → | 2‑oxoglutarate decarboxylase, thiamine triphosphate‑binding |
| RA | 759,000 | C→A | 93.2% | F177L (TTC→TTA) | sucC → | succinyl‑CoA synthetase, beta subunit |
| RA | 772,664 | A→C | 16.1% | K289N (AAA→AAC) | tolA → | membrane anchored protein in TolA‑TolQ‑TolR complex |
| RA | 773,443 | C→A | 14.4% | A83E (GCG→GAG) | tolB → | periplasmic protein |
| RA | 777,175 | A→T | 8.6% | intergenic (+67/‑366) | lysQ → / → nadA | tRNA‑Lys/quinolinate synthase, subunit A |
| RA | 788,902 | G→T | 92.9% | R115S (CGT→AGT) | modF ← | fused molybdate transporter subunits of ABC superfamily: ATP‑binding components |
| RA | 795,472 | T→A | 13.8% | E187V (GAG→GTG) | ybhD ← | putative DNA‑binding transcriptional regulator |
| RA | 800,488 | G→T | 35.4% | V510V (GTG→GTT) | ybhJ → | putative hydratase |
| RA | 800,779 | G→T | 94.9% | E607D (GAG→GAT) | ybhJ → | putative hydratase |
| RA | 802,887 | G→T | 5.6% | intergenic (‑150/+2) | ybhC ← / ← ybhB | acyl‑CoA thioesterase, lipoprotein/kinase inhibitor homolog, UPF0098 family |
| RA | 828,374 | G→T | 94.6% | V11V (GTC→GTA) | ybiA ← | DUF1768 family protein |
| RA | 832,445 | G→T | 37.2% | P213P (CCG→CCT) | ybiC → | putative dehydrogenase |
| RA | 833,505 | G→T | 11.9% | intergenic (‑124/+141) | ybiJ ← / ← ybiI | DUF1471 family putative periplasmic protein/DksA‑type zinc finger protein |
| RA | 843,299 | C→A | 23.0% | W54C (TGG→TGT) | glnH ← | glutamine transporter subunit |
| RA | 876,447 | G→A | 94.7% | D89N (GAT→AAT) | dacC → | D‑alanyl‑D‑alanine carboxypeptidase (penicillin‑binding protein 6a) |
| RA | 879,085 | G→T | 91.7% | intergenic (‑241/‑44) | ybjG ← / → mdfA | undecaprenyl pyrophosphate phosphatase/multidrug efflux system protein |
| RA | 892,180 | G→A | 7.1% | P197P (CCG→CCA) | potH → | putrescine transporter subunit: membrane component of ABC superfamily |
| RA | 902,091 | A→T | 10.4% | L40Q (CTG→CAG) | ybjS ← | putative NAD(P)H‑dependent oxidoreductase with NAD(P)‑binding Rossmann‑fold domain |
| RA | 915,421 | G→T | 10.9% | W244L (TGG→TTG) | macA → | macrolide transporter subunit, membrane fusion protein (MFP) component |
| RA | 917,071 | G→T | 6.8% | V423V (GTG→GTT) | macB → | fused macrolide transporter subunits of ABC superfamily: ATP‑binding component/membrane component |
| RA | 923,339 | G→T | 14.4% | S438* (TCG→TAG) | cydC ← | fused glutathione, cysteine exporter subunits of ABC superfamily: membrane component/ATP‑binding component |
| RA | 924,905 | G→T | 6.1% | S505* (TCG→TAG) | cydD ← | fused glutathione, cysteine exporter subunits of ABC superfamily: membrane component/ATP‑binding component |
| RA | 925,160 | G→T | 32.8% | S420* (TCA→TAA) | cydD ← | fused glutathione, cysteine exporter subunits of ABC superfamily: membrane component/ATP‑binding component |
| RA | 941,177 | G→A | 27.0% | intergenic (‑164/‑150) | ycaC ← / → ycaD | putative isochorismatase family hydrolase/putative MFS‑type transporter |
| RA | 943,573 | G→T | 27.1% | A297S (GCC→TCC) | ycaM → | putative transporter |
| RA | 947,058 | G→T | 6.1% | S651S (TCC→TCA) | pflB ← | formate C‑acetyltransferase 1, anaerobic; pyruvate formate‑lyase 1 |
| RA | 950,103 | T→C | 8.9% | intergenic (‑181/+225) | focA ← / ← ycaO | formate channel/ribosomal protein S12 methylthiotransferase accessory factor |
| RA | 954,475 | C→A | 19.7% | R70S (CGT→AGT) | aroA → | 5‑enolpyruvylshikimate‑3‑phosphate synthetase |
| RA | 960,043 | G→T | 15.7% | G90C (GGC→TGC) | ycaI → | ComEC family inner membrane protein |
| RA | 968,415 | G→T | 94.7% | S148* (TCG→TAG) | ycbC ← | DUF218 superfamily protein |
| RA | 975,610 | G→T | 7.0% | V1277L (GTG→TTG) | mukB → | chromosome condensin MukBEF, ATPase and DNA‑binding subunit |
| RA | 1,047,553 | G→A | 5.3% | E11K (GAA→AAA) | gnsA → | putative phosphatidylethanolamine synthesis regulator |
| RA | 1,048,928 | C→A | 32.1% | E903* (GAA→TAA) | torS ← | hybrid sensory histidine kinase in two‑component regulatory system with TorR |
| RA | 1,049,407 | G→T | 38.6% | T743K (ACG→AAG) | torS ← | hybrid sensory histidine kinase in two‑component regulatory system with TorR |
| RA | 1,055,901 | A→T | 15.0% | Q397L (CAA→CTA) | torA → | trimethylamine N‑oxide (TMAO) reductase I, catalytic subunit |
| RA | 1,077,911 | A→C | 92.6% | K71N (AAA→AAC) | efeO → | inactive ferrous ion transporter EfeUOB |
| RA | 1,084,103 | A→T | 24.7% | L404* (TTA→TAA) | pgaB ← | poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine (PGA) N‑deacetylase outer membrane export lipoprotein |
| RA | 1,098,065 | C→A | 5.6% | K196N (AAG→AAT) | csgD ← | csgBAC operon transcriptional regulator |
| RA | 1,116,964 | A→G | 93.8% | intergenic (‑21/+53) | dinI ← / ← pyrC | DNA damage‑inducible protein I/dihydro‑orotase |
| RA | 1,118,506 | A→T | 6.0% | L75Q (CTA→CAA) | yceB ← | lipoprotein, DUF1439 family |
| RA | 1,136,758 | T→A | 9.4% | A1022A (GCA→GCT) | rne ← | fused ribonucleaseE: endoribonuclease/RNA‑binding protein/RNA degradosome binding protein |
| RA | 1,148,279 | G→T | 8.2% | A295A (GCG→GCT) | fabF → | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase II |
| RA | 1,151,750 | G→T | 90.3% | R178L (CGC→CTC) | holB → | DNA polymerase III, delta prime subunit |
| RA | 1,152,278 | G→T | 90.6% | E16* (GAA→TAA) | ycfH → | putative DNase |
| RA | 1,164,408 | T→A | 8.4% | intergenic (‑120/‑121) | ycfQ ← / → bhsA | repressor for bhsA(ycfR)/biofilm, cell surface and signaling protein |
| RA | 1,193,873 | G→T | 100% | intergenic (‑180/‑278) | ymfE ← / → lit | e14 prophage; putative inner membrane protein/e14 prophage; cell death peptidase, inhibitor of T4 late gene expression |
| RA | 1,211,169 | C→A | 36.5% | intergenic (‑238/‑76) | bluF ← / → ycgZ | anti‑repressor for YcgE, blue light‑responsive; FAD‑binding; has c‑di‑GMP phosphodiesterase‑like EAL domain, but does not degrade c‑di‑GMP/RcsB connector protein for regulation of biofilm and acid‑resistance |
| RA | 1,212,129 | T→C | 5.9% | intergenic (+38/‑75) | ariR → / → ymgC | RcsB connector protein for regulation of biofilm and acid‑resistance/Blue light, low temperature and stress induced protein |
| RA | 1,215,174 | G→T | 13.8% | pseudogene (118/2648 nt) | ycgH → | pseudogene; putative ATP‑binding component of a transport system |
| RA | 1,219,533 | A→G | 67.8% | intergenic (+170/+202) | ycgI → / ← minE | pseudogene/cell division topological specificity factor |
| RA | 1,220,996 | G→T | 90.3% | R181R (CGG→AGG) | minC ← | cell division inhibitor |
| RA | 1,222,958 | T→C | 5.4% | intergenic (‑30/‑212) | pliG ← / → ycgL | periplasmic inhibitor of g‑type lysozyme/UPF0745 family protein |
| RA | 1,224,292 | G→A | 66.5% | D8N (GAT→AAT) | ycgN → | UPF0153 family cysteine cluster protein |
| RA | 1,226,292 | T→A | 68.4% | C24S (TGT→AGT) | umuD → | DNA polymerase V, subunit D |
| RA | 1,228,591 | G→T | 100% | intergenic (‑105/+41) | dsbB ← / ← nhaB | oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I/sodium:proton antiporter |
| RA | 1,266,181 | C→G | 5.0% | intergenic (+265/+24) | rdlC → / ← chaA | sRNA antisense regulator affects LdrC translation; proposed addiction module in LDR‑C repeat, with toxic peptide LdrC/calcium/sodium:proton antiporter |
| RA | 1,270,758 | A→T | 10.8% | I176I (ATT→ATA) | narL ← | response regulator in two‑component regulatory system with NarX (or NarQ) |
| RA | 1,277,786 | G→A | 36.3% | D823N (GAC→AAC) | narG → | nitrate reductase 1, alpha subunit |
| RA | 1,293,416 | A→T | 8.7% | V54V (GTT→GTA) | adhE ← | fused acetaldehyde‑CoA dehydrogenase/iron‑dependent alcohol dehydrogenase/pyruvate‑formate lyase deactivase |
| RA | 1,308,862 | A→C | 10.2% | S196R (AGC→CGC) | ompW → | outer membrane protein W |
| RA | 1,309,158 | G→A | 12.6% | I108I (ATC→ATT) | yciE ← | putative rubrerythrin/ferritin‑like metal‑binding protein |
| RA | 1,322,140 | T→A | 86.8% | T159S (ACG→TCG) | btuR ← | cob(I)yrinic acid a,c‑diamide adenosyltransferase |
| RA | 1,337,533 | G→T | 33.8% | A18E (GCA→GAA) | osmB ← | lipoprotein |
| RA | 1,345,484 | A→C | 9.0% | intergenic (‑188/+180) | fabI ← / ← ycjD | enoyl‑[acyl‑carrier‑protein] reductase, NADH‑dependent/DUF559 family endonuclease‑related protein |
| RA | 1,365,283 | G→T | 81.0% | E271* (GAG→TAG) | ycjM → | alpha amylase catalytic domain family protein |
| JC JC | 1,376,043 | IS5 (–) +4 bp | 100% | pseudogene (10‑13/126 nt) | ycjV → | pseudogene; putative ATP‑binding component of a transport system |
| RA | 1,377,394 | C→T | 92.2% | A275A (GCG→GCA) | ycjW ← | LacI family putative transcriptional repressor |
| RA | 1,386,008 | G→T | 79.9% | Q35K (CAG→AAG) | ycjY ← | S9 homolog non‑peptidase family protein |
| RA | 1,388,406 | G→T | 89.3% | R308L (CGC→CTC) | mppA → | murein tripeptide (L‑ala‑gamma‑D‑glutamyl‑meso‑DAP) transporter subunit |
| RA | 1,399,129 | A→C | 6.8% | E44D (GAA→GAC) | abgR → | putative DNA‑binding transcriptional regulator of abgABT operon |
| RA | 1,403,313 | C→T | 24.5% | intergenic (+23/‑73) | ydaN → / → fnrS | putative Zn(II) transporter/FNR‑activated anaerobic sRNA antisense regulator down regulates cydDC, metE, sodA, sodB, Hfq‑dependent; mediates negative FNR regulation |
| RA | 1,424,234 | C→A | 36.0% | S310* (TCA→TAA) | stfR → | Rac prophage; putative tail fiber protein |
| JC JC | 1,428,894 | IS2 (–) +5 bp | 29.4% | intergenic (‑413/+317) | ynaE ← / ← ttcC | cold shock protein, Rac prophage/pseudogene, prophage Rac integration site ttcA duplication;Phage or Prophage Related |
| RA | 1,439,518 | C→A | 25.8% | S737S (TCC→TCA) | ydbH → | putative membrane‑anchored protein, function unknown |
| RA | 1,454,254 | C→T | 9.2% | T315M (ACG→ATG) | paaH → | 3‑hydroxyadipyl‑CoA dehydrogenase, NAD+‑dependent |
| RA | 1,454,724 | G→T | 29.0% | G472C (GGT→TGT) | paaH → | 3‑hydroxyadipyl‑CoA dehydrogenase, NAD+‑dependent |
| RA | 1,471,707 | A→T | 16.7% | *769C (TGA→TGT) | ydbD → | PF10971 family putative periplasmic methylglyoxal resistance protein |
| RA | 1,472,138 | G→T | 20.1% | A87A (GCG→GCT) | ynbA → | inner membrane protein |
| RA | 1,500,047 | A→T | 5.1% | F97L (TTT→TTA) | ydcO ← | BenE family inner membrane putative transporter |
| RA | 1,501,734 | G→T | 26.0% | D233Y (GAT→TAT) | ydcP → | putative peptidase |
| RA | 1,519,349 | T→A | 94.4% | K297* (AAA→TAA) | ansP ← | L‑asparagine transporter |
| RA | 1,539,484 | G→A | 13.2% | pseudogene (488/951 nt) | yddK ← | pseudogene, leucine‑rich protein; putative glycoportein |
| RA | 1,548,144 | G→T | 91.9% | intergenic (‑49/+85) | adhP ← / ← maeA | ethanol‑active dehydrogenase/acetaldehyde‑active reductase/malate dehydrogenase, (decarboxylating, NAD‑requiring) (malic enzyme) |
| RA | 1,563,276 | G→T | 94.5% | H491N (CAC→AAC) | gadC ← | glutamate:gamma‑aminobutyric acid antiporter |
| RA | 1,565,497 | G→A | 100% | S269L (TCG→TTG) | gadB ← | glutamate decarboxylase B, PLP‑dependent |
| RA | 1,575,339 | G→T | 29.0% | F481L (TTC→TTA) | ydeN ← | putative Ser‑type periplasmic non‑aryl sulfatase |
| RA | 1,603,440 | G→A | 29.2% | intergenic (‑161/+46) | yneE ← / ← uxaB | bestrophin family putative inner membrane protein/altronate oxidoreductase, NAD‑dependent |
| RA | 1,604,068 | G→T | 9.7% | T290T (ACC→ACA) | uxaB ← | altronate oxidoreductase, NAD‑dependent |
| RA | 1,606,883 | A→C | 6.8% | F209C (TTT→TGT) | glsB ← | glutaminase 2 |
| RA | 1,620,961 | T→G | 32.4% | Q226P (CAA→CCA) | dcp ← | dipeptidyl carboxypeptidase II |
| RA | 1,628,207 | G→A | 100% | G110E (GGA→GAA) | pinQ → | Qin prophage; putative site‑specific recombinase |
| RA | 1,640,634 | G→T | 22.0% | intergenic (+175/‑28) | ydfV → / → flxA | Qin prophage; uncharacterized protein/Qin prophage; uncharacterized protein |
| RA | 1,649,456 | C→T | 12.1% | intergenic (‑58/+148) | rspA ← / ← ynfA | bifunctional D‑altronate/D‑mannonate dehydratase/UPF0060 family inner membrane protein |
| RA | 1,661,763 | C→A | 94.0% | P353P (CCG→CCT) | mlc ← | glucosamine anaerobic growth regulon transcriptional repressor; autorepressor |
| RA | 1,662,484 | G→A | 6.5% | S113L (TCG→TTG) | mlc ← | glucosamine anaerobic growth regulon transcriptional repressor; autorepressor |
| RA | 1,666,139 | C→T | 5.8% | intergenic (+22/‑78) | ydgU → / → ydgD | stationary phase‑induced protein/putative peptidase |
| RA | 1,696,612 | A→T | 73.2% | E41D (GAA→GAT) | add → | adenosine deaminase |
| RA | 1,711,397 | C→T | 95.0% | R28Q (CGA→CAA) | tyrS ← | tyrosyl‑tRNA synthetase |
| RA | 1,732,014 | C→A | 23.2% | intergenic (‑212/‑87) | ynhF ← / → purR | stress response membrane/transcriptional repressor, hypoxanthine‑binding |
| RA | 1,754,950 | T→A | 24.6% | I367F (ATT→TTT) | sufD ← | component of SufBCD Fe‑S cluster assembly scaffold |
| RA | 1,770,281 | T→A | 89.4% | D146E (GAT→GAA) | ydiF → | putative acetyl‑CoA:acetoacetyl‑CoA transferase: alpha subunit/beta subunit |
| RA | 1,784,952 | A→G | 14.5% | F184L (TTT→CTT) | ydiU ← | UPF0061 family protein |
| RA | 1,796,428 | C→A | 7.2% | V134F (GTC→TTC) | thrS ← | threonyl‑tRNA synthetase |
| RA | 1,802,047 | G→A | 90.4% | intergenic (+100/‑6) | ydiZ → / → yniA | uncharacterized protein/fructosamine kinase family protein |
| RA | 1,824,100 | T→A | 5.2% | D308V (GAT→GTT) | astA ← | arginine succinyltransferase |
| RA | 1,825,763 | C→A | 26.2% | A159A (GCG→GCT) | astC ← | succinylornithine transaminase, PLP‑dependent |
| RA | 1,832,413 | C→A | 82.7% | L315L (CTC→CTA) | ynjC → | inner membrane putative ABC superfamily transporter permease |
| RA | 1,833,730 | C→A | 100% | R3S (CGT→AGT) | ynjE → | molybdopterin synthase sulfurtransferase |
| RA | 1,834,943 | C→T | 8.1% | S407F (TCC→TTC) | ynjE → | molybdopterin synthase sulfurtransferase |
| RA | 1,861,773 | T→A | 18.3% | I203I (ATT→ATA) | yeaG → | protein kinase, endogenous substrate unidentified; autokinase |
| RA | 1,865,422 | C→A | 91.4% | R261R (CGA→AGA) | yeaI → | putative membrane‑anchored diguanylate cyclase |
| RA | 1,872,520 | G→T | 90.4% | P183P (CCG→CCT) | yeaP → | diguanylate cyclase |
| RA | 1,882,569 | C→T | 9.5% | G479S (GGC→AGC) | fadD ← | acyl‑CoA synthetase (long‑chain‑fatty‑acid‑‑CoA ligase) |
| RA | 1,884,212 | T→C | 5.1% | E193G (GAA→GGA) | yeaY ← | Slp family lipoprotein, RpoE‑regulated |
| RA | 1,891,773 | C→A | 11.3% | N195K (AAC→AAA) | sdaA → | L‑serine dehydratase 1 |
| RA | 1,904,831 | T→G | 9.8% | L100R (CTT→CGT) | yebQ → | putative transporter |
| RA | 1,906,096 | T→A | 6.5% | K246N (AAA→AAT) | htpX ← | putative endopeptidase |
| RA | 1,907,821 | T→G | 5.7% | Q418P (CAG→CCG) | prc ← | carboxy‑terminal protease for penicillin‑binding protein 3 |
| RA | 1,909,342 | T→A | 94.9% | E150D (GAA→GAT) | proQ ← | RNA chaperone, putative ProP translation regulator |
| RA | 1,915,555 | A→C | 5.4% | Q359P (CAG→CCG) | rsmF → | 16S rRNA m(5)C1407 methyltransferase, SAM‑dependent |
| RA | 1,944,177 | C→A | 86.8% | L201L (CTG→CTT) | aspS ← | aspartyl‑tRNA synthetase |
| RA | 1,948,689 | G→A | 24.2% | intergenic (+19/+146) | cmoB → / ← torZ | tRNA (cmo5U34)‑carboxymethyltransferase, carboxy‑SAM‑dependent/trimethylamine N‑oxide reductase system III, catalytic subunit |
| RA | 1,969,291 | G→T | 66.3% | I97I (ATC→ATA) | cheA ← | fused chemotactic sensory histidine kinase in two‑component regulatory system with CheB and CheY: sensory histidine kinase/signal sensing protein |
| RA | 1,986,289 | T→A | 33.4% | N4Y (AAT→TAT) | pgsA ← | phosphatidylglycerophosphate synthetase |
| RA | 1,997,314 | G→T | 23.8% | intergenic (‑227/‑39) | fliC ← / → fliD | flagellar filament structural protein (flagellin)/flagellar filament capping protein |
| RA | 1,999,632 | G→T | 24.9% | intergenic (+73/‑5) | fliT → / → amyA | putative flagellar synthesis and assembly chaperone/cytoplasmic alpha‑amylase |
| RA | 2,020,166 | C→A | 85.7% | D445Y (GAC→TAC) | yedQ ← | putative membrane‑anchored diguanylate cyclase |
| RA | 2,035,090 | C→A | 21.9% | Q79K (CAG→AAG) | zinT → | zinc and cadmium binding protein, periplasmic |
| RA | 2,035,236 | A→T | 16.6% | K127N (AAA→AAT) | zinT → | zinc and cadmium binding protein, periplasmic |
| RA | 2,067,638 | C→T | 6.3% | T873T (ACC→ACT) | flu → | CP4‑44 prophage; antigen 43 (Ag43) phase‑variable biofilm formation autotransporter |
| RA | 2,070,058 | C→A | 13.2% | A90A (GCC→GCA) | yeeS → | CP4‑44 prophage; putative DNA repair protein |
| RA | 2,074,680 | A→T | 36.4% | W22R (TGG→AGG) | sbmC ← | DNA gyrase inhibitor |
| RA | 2,078,521 | C→A | 14.1% | V162V (GTG→GTT) | yeeE ← | UPF0394 family inner membrane protein |
| RA | 2,098,995 | C→A | 93.1% | G182* (GGA→TGA) | wbbI ← | d‑Galf:alpha‑d‑Glc beta‑1,6‑galactofuranosyltransferase |
| RA | 2,100,755 | C→T | 5.4% | V352V (GTG→GTA) | glf ← | UDP‑galactopyranose mutase, FAD/NAD(P)‑binding |
| RA | 2,108,219:1 | +A | 100% | coding (1159/1395 nt) | wcaM ← | colanic acid biosynthesis protein |
| RA | 2,114,911 | A→T | 86.5% | L42Q (CTG→CAG) | wcaJ ← | colanic biosynthesis UDP‑glucose lipid carrier transferase |
| RA | 2,124,159 | C→A | 25.4% | A67A (GCG→GCT) | wcaD ← | putative colanic acid polymerase |
| RA | 2,125,946 | G→T | 13.1% | R31S (CGC→AGC) | wcaB ← | putative acyl transferase |
| RA | 2,136,421 | A→G | 12.1% | D3D (GAT→GAC) | udk ← | uridine/cytidine kinase |
| RA | 2,137,996 | T→G | 8.8% | L417R (CTA→CGA) | yegE → | putative diguanylate cyclase |
| RA | 2,139,910 | G→T | 100% | R1055L (CGA→CTA) | yegE → | putative diguanylate cyclase |
| RA | 2,144,474 | C→A | 90.5% | intergenic (‑8/‑192) | yegI ← / → yegJ | protein kinase‑related putative non‑specific DNA‑binding protein/uncharacterized protein |
| RA | 2,149,603 | A→T | 21.7% | E287V (GAA→GTA) | mdtB → | multidrug efflux system, subunit B |
| RA | 2,154,021 | G→A | 6.3% | D719N (GAC→AAC) | mdtC → | multidrug efflux system, subunit C |
| RA | 2,168,487 | A→T | 19.2% | D14E (GAT→GAA) | gatA ← | galactitol‑specific enzyme IIA component of PTS |
| RA | 2,168,795 | C→A | 70.5% | D336Y (GAT→TAT) | gatZ ← | D‑tagatose 1,6‑bisphosphate aldolase 2, subunit |
| RA | 2,170,708 | G→T | 8.2% | intergenic (‑25/+283) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| RA | 2,170,713 | C→A | 27.9% | intergenic (‑30/+278) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| RA | 2,170,724 | G→T | 25.4% | intergenic (‑41/+267) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| RA | 2,170,749 | G→T | 8.9% | intergenic (‑66/+242) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| RA | 2,179,205 | G→T | 65.5% | A24E (GCG→GAG) | rcnR ← | transcriptional repressor of rcnA |
| RA | 2,181,645 | A→G | 32.6% | N83N (AAT→AAC) | yehA ← | putative fimbrial‑like adhesin protein |
| RA | 2,185,860 | G→A | 22.1% | intergenic (‑159/+134) | yehD ← / ← yehE | putative fimbrial‑like adhesin protein/DUF2574 family protein |
| RA | 2,194,695 | T→A | 66.7% | L313Q (CTA→CAA) | yehI → | DUF4132 domain‑containing protein |
| RA | 2,195,449 | A→T | 92.9% | E564D (GAA→GAT) | yehI → | DUF4132 domain‑containing protein |
| RA | 2,206,521 | C→A | 14.8% | D535Y (GAT→TAT) | yehU ← | inner membrane putative sensory kinase in two‑component system with YehT |
| RA | 2,216,296 | C→A | 86.9% | I211I (ATC→ATA) | dld → | D‑lactate dehydrogenase, FAD‑binding, NADH independent |
| RA | 2,225,190 | C→T | 27.9% | G231G (GGC→GGT) | yohK → | LrgB family inner membrane protein |
| RA | 2,237,098 | G→T | 90.2% | H12N (CAT→AAT) | folE ← | GTP cyclohydrolase I |
| RA | 2,237,441 | G→T | 7.1% | R18L (CGA→CTA) | yeiG → | S‑formylglutathione hydrolase |
| RA | 2,254,517 | C→T | 14.2% | A125T (GCC→ACC) | fruA ← | fused fructose‑specific PTS enzymes: IIBcomponent/IIC components |
| RA | 2,254,766 | C→A | 5.4% | E42* (GAA→TAA) | fruA ← | fused fructose‑specific PTS enzymes: IIBcomponent/IIC components |
| RA | 2,257,823 | C→A | 8.9% | P161Q (CCG→CAG) | setB → | lactose/glucose efflux system |
| RA | 2,264,143 | G→A | 79.6% | intergenic (+119/‑62) | mepS → / → rtn | murein DD‑endopeptidase, space‑maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein/resistance protein for phages lambda and N4, putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
| RA | 2,273,246 | C→T | 5.3% | intergenic (‑7/+21) | bcr ← / ← rsuA | bicyclomycin/cysteine/sulfonamide efflux transporter/16S rRNA pseudouridine(516) synthase |
| RA | 2,289,374 | C→A | 89.7% | V142V (GTG→GTT) | ccmC ← | heme exporter subunit |
| RA | 2,298,128 | C→T | 11.1% | intergenic (+256/+459) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,298,492 | A→G | 6.8% | intergenic (+620/+95) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,303,070 | T→G | 71.5% | Q272P (CAG→CCG) | ada ← | fused DNA‑binding transcriptional dual regulator/O6‑methylguanine‑DNA methyltransferase |
| RA | 2,305,116 | C→A | 91.4% | intergenic (‑103/+9) | apbE ← / ← ompC | putative thiamine‑synthetic flavin transferase lipoprotein/outer membrane porin protein C |
| RA | 2,305,135 | T→C | 69.5% | Y365C (TAC→TGC) | ompC ← | outer membrane porin protein C |
| RA | 2,311,308 | T→A | 5.8% | Q683L (CAG→CTG) | rcsC ← | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN |
| RA | 2,330,502 | C→A | 27.1% | D800Y (GAT→TAT) | gyrA ← | DNA gyrase (type II topoisomerase), subunit A |
| RA | 2,352,573 | C→A | 93.7% | P353P (CCG→CCT) | rhmT ← | putative L‑rhamnonate transporter |
| RA | 2,352,965 | C→A | 16.7% | E223* (GAA→TAA) | rhmT ← | putative L‑rhamnonate transporter |
| RA | 2,359,673 | G→T | 93.2% | M89I (ATG→ATT) | arnB → | uridine 5'‑(beta‑1‑threo‑pentapyranosyl‑4‑ulose diphosphate) aminotransferase, PLP‑dependent |
| RA | 2,361,054 | C→A | 5.6% | H169N (CAT→AAT) | arnC → | undecaprenyl phosphate‑L‑Ara4FN transferase |
| RA | 2,362,338 | T→A | 100% | L274Q (CTG→CAG) | arnA → | fused UDP‑L‑Ara4N formyltransferase/UDP‑GlcA C‑4'‑decarboxylase |
| RA | 2,370,361:1 | +G | 93.0% | coding (711/759 nt) | menH ← | 2‑succinyl‑6‑hydroxy‑2, 4‑cyclohexadiene‑1‑carboxylate synthase |
| RA | 2,370,987 | C→A | 92.3% | E29* (GAA→TAA) | menH ← | 2‑succinyl‑6‑hydroxy‑2, 4‑cyclohexadiene‑1‑carboxylate synthase |
| RA | 2,379,310 | C→A | 17.4% | intergenic (‑109/‑29) | yfbK ← / → yfbL | Von Willebrand factor domain putative lipoprotein/putative peptidase |
| RA | 2,381,180 | G→A | 18.0% | intergenic (+264/+9) | yfbM → / ← yfbN | DUF1877 family protein/uncharacterized protein |
| RA | 2,399,210 | G→T | 71.2% | S304* (TCA→TAA) | lrhA ← | transcriptional repressor of flagellar, motility and chemotaxis genes |
| RA | 2,405,946 | T→G | 100% | Q43P (CAG→CCG) | yfbU ← | UPF0304 family protein |
| RA | 2,416,101 | C→A | 66.8% | intergenic (+21/+27) | yfcH → / ← yfcI | putative NAD‑dependent nucleotide‑sugar epimerase/transposase_31 family protein |
| RA | 2,421,405 | C→T | 5.6% | intergenic (‑135/+131) | argT ← / ← ubiX | lysine/arginine/ornithine transporter subunit/3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase |
| RA | 2,422,841 | C→A | 88.6% | D293Y (GAT→TAT) | purF ← | amidophosphoribosyltransferase |
| RA | 2,424,074 | C→T | 94.1% | D57N (GAC→AAC) | cvpA ← | colicin V production membrane protein |
| RA | 2,436,760 | G→T | 11.7% | T506T (ACG→ACT) | mnmC → | fused 5‑methylaminomethyl‑2‑thiouridine‑forming enzyme methyltransferase and FAD‑dependent demodification enzyme |
| RA | 2,450,335 | C→T | 93.2% | intergenic (‑44/+159) | sixA ← / ← fadJ | phosphohistidine phosphatase/fused enoyl‑CoA hydratase and epimerase and isomerase/3‑hydroxyacyl‑CoA dehydrogenase |
| RA | 2,450,346 | G→T | 65.8% | intergenic (‑55/+148) | sixA ← / ← fadJ | phosphohistidine phosphatase/fused enoyl‑CoA hydratase and epimerase and isomerase/3‑hydroxyacyl‑CoA dehydrogenase |
| RA | 2,452,454 | G→T | 69.0% | P62Q (CCG→CAG) | fadJ ← | fused enoyl‑CoA hydratase and epimerase and isomerase/3‑hydroxyacyl‑CoA dehydrogenase |
| RA | 2,454,297 | T→G | 87.7% | E39D (GAA→GAC) | yfcZ ← | UPF0381 family protein |
| RA | 2,457,708 | G→T | 22.0% | intergenic (+159/+23) | yfdF → / ← mlaA | uncharacterized protein/ABC transporter maintaining OM lipid asymmetry, OM lipoprotein component |
| RA | 2,463,713 | T→C | 8.7% | I368I (ATT→ATC) | gtrS → | serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage |
| RA | 2,463,915 | C→A | 13.2% | Q436K (CAA→AAA) | gtrS → | serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage |
| RA | 2,474,418 | G→T | 93.4% | S413* (TCA→TAA) | emrY ← | putative multidrug efflux system |
| RA | 2,482,981 | C→A | 10.0% | E229* (GAA→TAA) | yfdV ← | putative transporter |
| RA | 2,493,283 | C→A | 18.1% | N378K (AAC→AAA) | ypdA → | sensor kinase regulating yhjX; pyruvate‑responsive YpdAB two‑component system |
| RA | 2,520,652 | C→A | 70.4% | I116I (ATC→ATA) | yfeH → | putative inorganic ion transporter |
| RA | 2,525,538 | G→T | 21.7% | A239A (GCG→GCT) | cysZ → | EI24 family inner membrane protein; putative sulfate transporter |
| RA | 2,526,745 | G→A | 6.8% | intergenic (+6/‑378) | cysK → / → ptsH | cysteine synthase A, O‑acetylserine sulfhydrolase A subunit/phosphohistidinoprotein‑hexose phosphotransferase component of PTS system (Hpr) |
| RA | 2,544,288 | C→A | 8.9% | V96V (GTG→GTT) | yfeY ← | RpoE‑regulated lipoprotein |
| RA | 2,549,676 | C→A | 65.3% | L28L (CTG→CTT) | eutL ← | putative ethanol utilization carboxysome structural protein |
| RA | 2,568,720 | C→T | 67.5% | A33T (GCC→ACC) | eutP ← | putative P‑loop NTPase ethanolamine utilization protein |
| RA | 2,576,325 | C→A | 92.1% | E171D (GAG→GAT) | nudK ← | GDP‑mannose pyrophosphatase |
| RA | 2,587,029:1 | +G | 89.7% | coding (101/699 nt) | ypfH ← | palmitoyl‑CoA esterase activity, uncertain physiological substrate |
| RA | 2,587,434 | T→A | 5.5% | L595F (TTA→TTT) | tmcA ← | elongator methionine tRNA (ac4C34) acetyltransferase |
| RA | 2,589,933 | G→A | 74.9% | T55I (ACC→ATC) | ypfJ ← | putative neutral zinc metallopeptidase |
| RA | 2,590,777 | C→T | 8.7% | P67P (CCG→CCA) | purC ← | phosphoribosylaminoimidazole‑succinocarboxamide synthetase |
| RA | 2,595,292 | C→A | 7.2% | S39* (TCG→TAG) | hyfB → | hydrogenase 4, membrane subunit |
| RA | 2,596,499 | G→A | 6.0% | G441G (GGG→GGA) | hyfB → | hydrogenase 4, membrane subunit |
| RA | 2,602,418 | C→A | 19.1% | I191I (ATC→ATA) | hyfG → | hydrogenase 4, subunit |
| RA | 2,605,882 | C→A | 8.3% | S208R (AGC→AGA) | hyfR → | hydrogenase‑4 transcriptional activator |
| RA | 2,606,516 | G→T | 92.4% | D420Y (GAC→TAC) | hyfR → | hydrogenase‑4 transcriptional activator |
| RA | 2,609,187 | C→A | 9.6% | A18A (GCG→GCT) | yfgO ← | putative UPF0118 family inner membrane permease |
| RA | 2,610,919 | C→A | 65.2% | intergenic (+3/‑18) | bepA → / → yfgD | periplasmic metalloprotease and chaperone for OM protein maintenance and assembly/putative oxidoreductase |
| RA | 2,614,168 | C→A | 91.7% | D22Y (GAT→TAT) | upp ← | uracil phosphoribosyltransferase |
| RA | 2,651,665 | G→T | 100% | G210G (GGC→GGA) | hscA ← | DnaK‑like molecular chaperone specific for IscU |
| RA | 2,664,779 | G→T | 5.5% | D66Y (GAT→TAT) | hcaB → | 2,3‑dihydroxy‑2,3‑dihydrophenylpropionate dehydrogenase |
| RA | 2,671,274 | C→A | 94.3% | T149T (ACG→ACT) | yphE ← | putative sugar transporter subunit of ABC superfamily, ATP‑binding component |
| RA | 2,674,941 | G→T | 14.0% | I388I (ATC→ATA) | yphG ← | DUF4380 domain‑containing TPR repeat protein |
| RA | 2,681,873 | T→A | 93.1% | Q97L (CAG→CTG) | glrR ← | response regulator regulating glmY sRNA in two‑component system with sensor protein GlrK |
| RA | 2,683,829 | C→A | 64.3% | R210L (CGT→CTT) | glrK ← | sensor protein kinase regulating glmY sRNA in two‑component system with response regulator GlrR |
| RA | 2,689,722 | T→G | 20.1% | L188* (TTA→TGA) | mltF → | membrane‑bound lytic transglycosylase F, murein hydrolase |
| RA | 2,707,492 | A→C | 8.1% | K413T (AAG→ACG) | srmB → | ATP‑dependent RNA helicase |
| RA | 2,711,673 | A→C | 6.0% | V72G (GTT→GGT) | yfiF ← | putative methyltransferase |
| RA | 2,715,643 | G→T | 92.4% | E778* (GAA→TAA) | pka → | protein lysine acetyltransferase |
| RA | 2,718,953 | G→T | 13.3% | I51I (ATC→ATA) | kgtP ← | alpha‑ketoglutarate transporter |
| RA | 2,719,426 | T→C | 100% | intergenic (‑321/+2) | kgtP ← / ← rrfG | alpha‑ketoglutarate transporter/5S ribosomal RNA of rrnG operon |
| RA | 2,726,786 | C→A | 66.6% | A249A (GCG→GCT) | clpB ← | protein disaggregation chaperone |
| RA | 2,730,313 | G→A | 21.6% | intergenic (+71/‑200) | bamD → / → raiA | BamABCDE complex OM biogenesis lipoprotein/cold shock protein associated with 30S ribosomal subunit |
| RA | 2,733,753 | C→T | 100% | E253K (GAG→AAG) | aroF ← | 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tyrosine‑repressible |
| RA | 2,771,358 | G→A | 85.3% | intergenic (+217/+147) | ypjF → / ← ypjA | CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system/adhesin‑like autotransporter |
| RA | 2,772,026 | G→A | 6.2% | L1354L (CTG→TTG) | ypjA ← | adhesin‑like autotransporter |
| RA | 2,775,830 | C→T | 18.4% | D86N (GAT→AAT) | ypjA ← | adhesin‑like autotransporter |
| RA | 2,779,067 | C→A | 70.2% | intergenic (‑697/+54) | ypjC ← / ← ileY | pseudogene/tRNA‑Ile |
| RA | 2,781,864 | C→T | 5.3% | pseudogene (2109/2253 nt) | ygaQ → | uncharacterized protein; putative enzyme |
| RA | 2,785,895 | G→A | 6.9% | D422N (GAT→AAT) | gabD → | succinate‑semialdehyde dehydrogenase I, NADP‑dependent |
| RA | 2,809,621 | C→A | 23.8% | D60Y (GAT→TAT) | gshA ← | glutamate‑cysteine ligase |
| RA | 2,811,408 | T→A | 5.0% | intergenic (‑189/+10) | argQ ← / ← argZ | tRNA‑Arg/tRNA‑Arg |
| RA | 2,819,086 | A→G | 7.3% | intergenic (‑151/‑105) | mltB ← / → srlA | membrane‑bound lytic murein transglycosylase B/glucitol/sorbitol‑specific enzyme IIC component of PTS |
| RA | 2,825,783 | C→T | 100% | intergenic (‑135/‑52) | norR ← / → norV | anaerobic nitric oxide reductase DNA‑binding transcriptional activator/anaerobic nitric oxide reductase flavorubredoxin |
| RA | 2,828,952 | C→A | 74.4% | T611T (ACG→ACT) | hypF ← | carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases |
| RA | 2,841,044 | C→A | 48.5% | A519A (GCG→GCT) | hycC ← | hydrogenase 3, membrane subunit |
| RA | 2,850,790 | C→A | 91.8% | I113I (ATC→ATA) | mutS → | methyl‑directed mismatch repair protein |
| RA | 2,853,682 | G→A | 6.2% | M188I (ATG→ATA) | pphB → | serine/threonine‑specific protein phosphatase 2 |
| RA | 2,853,749 | C→T | 7.6% | R211W (CGG→TGG) | pphB → | serine/threonine‑specific protein phosphatase 2 |
| RA | 2,869,269 | C→A | 6.5% | E140D (GAG→GAT) | cysD ← | sulfate adenylyltransferase, subunit 2 |
| RA | 2,873,087 | G→T | 93.5% | V15V (GTC→GTA) | ygbT ← | multifunctional endonuclease Cas1, CRISPR adaptation protein; DNA repair enzyme |
| RA | 2,876,760 | C→T | 93.9% | G246G (GGG→GGA) | casA ← | CRISP RNA (crRNA) containing Cascade antiviral complex protein |
| RA | 2,878,668 | G→T | 82.9% | V637V (GTC→GTA) | ygcB ← | R‑loop helicase‑annealase Cas3 needed for Cascade anti‑viral activity |
| RA | 2,879,449 | G→T | 27.2% | S377* (TCA→TAA) | ygcB ← | R‑loop helicase‑annealase Cas3 needed for Cascade anti‑viral activity |
| RA | 2,888,584 | G→T | 68.5% | I185I (ATC→ATA) | ygcQ ← | putative flavoprotein |
| RA | 2,897,136 | C→A | 7.3% | intergenic (+403/+970) | ygcE → / ← queE | putative kinase/7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis |
| RA | 2,901,394 | C→A | 20.2% | A544A (GCG→GCT) | pyrG ← | CTP synthetase |
| RA | 2,928,446 | G→T | 12.3% | A285S (GCT→TCT) | fucP → | L‑fucose transporter |
| RA | 2,931,717 | C→A | 93.9% | N307K (AAC→AAA) | fucK → | L‑fuculokinase |
| RA | 2,934,843 | G→T | 100% | H50N (CAT→AAT) | ygdD ← | UPF0382 family inner membrane protein |
| RA | 2,940,010 | G→A | 6.8% | N176N (AAC→AAT) | mltA ← | membrane‑bound lytic murein transglycosylase A |
| RA | 2,944,129 | C→T | 7.8% | E564E (GAG→GAA) | recD ← | exonuclease V (RecBCD complex), alpha chain |
| RA | 2,953,192 | C→A | 15.9% | D866Y (GAC→TAC) | recC ← | exonuclease V (RecBCD complex), gamma chain |
| RA | 2,959,004 | G→A | 68.3% | I131I (ATC→ATT) | lgt ← | phosphatidylglycerol‑prolipoprotein diacylglyceryl transferase |
| RA | 2,983,868 | G→T | 12.0% | intergenic (‑149/‑45) | yqeK ← / → ygeF | uncharacterized protein/pseudogene |
| RA | 2,988,774 | C→A | 12.6% | pseudogene (346/447 nt) | ygeN ← | pseudogene |
| RA | 2,989,295 | C→A | 91.0% | pseudogene (85/261 nt) | ygeN ← | pseudogene |
| RA | 2,993,211 | C→A | 92.1% | V14L (GTG→TTG) | ygeR ← | LysM domain‑containing M23 family putative peptidase; septation lipoprotein |
| RA | 2,993,699 | C→A | 57.9% | intergenic (‑449/‑5) | ygeR ← / → xdhA | LysM domain‑containing M23 family putative peptidase; septation lipoprotein/xanthine dehydrogenase, molybdenum binding subunit |
| RA | 2,998,350 | C→A | 9.0% | E266* (GAA→TAA) | ygeV ← | putative sigma‑54‑interacting transcriptional activator |
| RA | 3,001,919 | C→A | 14.4% | H351N (CAT→AAT) | ygeX → | 2,3‑diaminopropionate ammonia lyase, PLP‑dependent |
| RA | 3,009,360 | C→A | 6.2% | intergenic (+263/‑59) | mocA → / → ygfK | CTP:molybdopterin cytidylyltransferase/putative Fe‑S subunit oxidoreductase subunit |
| RA | 3,017,285 | G→T | 63.7% | D871Y (GAC→TAC) | xdhD → | putative hypoxanthine oxidase, molybdopterin‑binding/Fe‑S binding |
| RA | 3,020,489 | G→T | 13.6% | D4Y (GAC→TAC) | ygfQ → | putative purine permease |
| RA | 3,020,629 | C→A | 11.1% | I50I (ATC→ATA) | ygfQ → | putative purine permease |
| RA | 3,024,983 | C→G | 84.3% | G86G (GGC→GGG) | uacT → | uric acid permease |
| RA | 3,037,190 | C→T | 6.5% | P57L (CCA→CTA) | bglA → | 6‑phospho‑beta‑glucosidase A |
| RA | 3,039,409 | T→G | 14.7% | intergenic (‑149/+118) | ygfF ← / ← gcvP | putative NAD(P)‑dependent oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/glycine decarboxylase, PLP‑dependent, subunit (protein P) of glycine cleavage complex |
| RA | 3,044,366 | C→A | 5.8% | intergenic (‑340/+108) | gcvT ← / ← ubiI | aminomethyltransferase, tetrahydrofolate‑dependent, subunit (T protein) of glycine cleavage complex/2‑octaprenylphenol hydroxylase, FAD‑dependent |
| RA | 3,044,464 | G→A | 94.6% | intergenic (‑438/+10) | gcvT ← / ← ubiI | aminomethyltransferase, tetrahydrofolate‑dependent, subunit (T protein) of glycine cleavage complex/2‑octaprenylphenol hydroxylase, FAD‑dependent |
| RA | 3,050,591 | C→A | 17.5% | A393A (GCG→GCT) | serA ← | D‑3‑phosphoglycerate dehydrogenase |
| RA | 3,055,546 | C→A | 25.6% | I446I (ATC→ATA) | scpA → | methylmalonyl‑CoA mutase |
| RA | 3,059,429 | G→A | 10.6% | V423V (GTG→GTA) | scpC → | propionyl‑CoA:succinate CoA transferase |
| RA | 3,064,914 | G→T | 22.5% | I356I (ATC→ATA) | pgk ← | phosphoglycerate kinase |
| RA | 3,075,114 | C→A | 91.3% | intergenic (‑120/‑158) | tktA ← / → loiP | transketolase 1, thiamine triphosphate‑binding/Phe‑Phe periplasmic metalloprotease, OM lipoprotein; low salt‑inducible; heat shock protein that binds Era |
| RA | 3,076,526 | C→A | 92.8% | D211Y (GAC→TAC) | speB ← | agmatinase |
| RA | 3,080,618 | T→A | 94.2% | V185E (GTG→GAG) | metK → | S‑adenosylmethionine synthetase |
| RA | 3,084,266 | C→A | 7.3% | L187L (CTC→CTA) | endA → | DNA‑specific endonuclease I |
| RA | 3,090,144 | C→A | 8.9% | G35G (GGC→GGA) | rdgB → | dITP/XTP pyrophosphatase |
| RA | 3,110,751 | C→A | 73.0% | R574L (CGT→CTT) | yghJ ← | DUF4092 family putative lipoprotein peptidase |
| RA | 3,111,434 | C→A | 91.1% | A346A (GCG→GCT) | yghJ ← | DUF4092 family putative lipoprotein peptidase |
| RA | 3,120,216 | C→A | 91.3% | D389Y (GAT→TAT) | glcD ← | glycolate oxidase subunit, FAD‑linked |
| RA | 3,127,390 | G→A | 6.3% | intergenic (‑74/‑100) | yghS ← / → yghT | putative ATP‑binding protein/putative ATP‑binding protein |
| RA | 3,144,158 | C→A | 39.2% | intergenic (+253/+19) | yghA → / ← exbD | putative oxidoreductase/membrane spanning protein in TonB‑ExbB‑ExbD complex |
| RA | 3,152,613 | C→A | 9.0% | P631P (CCG→CCT) | ygiQ ← | Radical SAM superfamily protein |
| RA | 3,173,669 | G→T | 89.0% | A189A (GCG→GCT) | ygiB → | DUF1190 family protein |
| RA | 3,181,577 | G→T | 5.9% | pseudogene (798/2445 nt) | yqiG → | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein |
| RA | 3,185,542 | C→T | 7.4% | intergenic (‑244/‑25) | glgS ← / → yqiJ | motility and biofilm regulator/DUF1449 family inner membrane protein |
| RA | 3,202,506 | C→A | 7.5% | S375* (TCG→TAG) | ttdT → | L‑tartrate/succinate antiporte |
| RA | 3,204,755 | T→A | 9.9% | V97E (GTG→GAG) | dnaG → | DNA primase |
| RA | 3,224,927 | C→A | 66.1% | intergenic (+329/‑97) | ygjK → / → fadH | alpha‑glucosidase/2,4‑dienoyl‑CoA reductase, NADH and FMN‑linked |
| RA | 3,225,516 | G→T | 18.0% | E165* (GAA→TAA) | fadH → | 2,4‑dienoyl‑CoA reductase, NADH and FMN‑linked |
| RA | 3,243,810 | C→T | 15.4% | intergenic (+75/‑111) | yqjK → / → yqjF | uncharacterized protein/putative quinol oxidase subunit |
| RA | 3,245,848 | G→T | 59.7% | L62L (CTG→CTT) | yhaH → | DUF805 family inner membrane protein |
| RA | 3,247,010 | C→A | 12.6% | P188P (CCG→CCT) | yhaJ ← | LysR family putative transcriptional regulator |
| RA | 3,252,258 | C→A | 92.5% | D251Y (GAT→TAT) | tdcG ← | L‑serine dehydratase 3, anaerobic |
| RA | 3,252,867 | C→A | 6.4% | D48Y (GAT→TAT) | tdcG ← | L‑serine dehydratase 3, anaerobic |
| RA | 3,260,182 | C→A | 11.4% | M81I (ATG→ATT) | tdcA ← | tdc operon transcriptional activator |
| RA | 3,262,844 | T→A | 13.4% | S357S (TCT→TCA) | yhaC → | pentapetide repeats‑related protein |
| RA | 3,263,502 | C→T | 5.1% | intergenic (+541/+73) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,266,646 | C→A | 36.1% | G91C (GGT→TGT) | garL ← | alpha‑dehydro‑beta‑deoxy‑D‑glucarate aldolase |
| RA | 3,272,550 | G→T | 6.7% | G93V (GGG→GTG) | kbaZ → | tagatose 6‑phosphate aldolase 1, kbaZ subunit |
| RA | 3,278,427 | C→A | 18.3% | C128* (TGC→TGA) | agaC → | N‑acetylgalactosamine‑specific enzyme IIC component of PTS |
| RA | 3,301,310 | C→T | 5.8% | intergenic (‑18/+89) | yrbN ← / ← nlpI | uncharacterized protein/lipoprotein involved in osmotic sensitivity and filamentation |
| RA | 3,302,027 | G→T | 88.8% | S86* (TCG→TAG) | nlpI ← | lipoprotein involved in osmotic sensitivity and filamentation |
| RA | 3,308,823 | T→C | 8.0% | K184R (AAG→AGG) | infB ← | translation initiation factor IF‑2 |
| RA | 3,311,918 | C→T | 19.1% | intergenic (‑270/‑78) | metY ← / → argG | tRNA‑Met/argininosuccinate synthetase |
| RA | 3,314,870 | C→A | 44.2% | A35S (GCG→TCG) | yhbX ← | putative EptAB family phosphoethanolamine transferase, inner membrane protein |
| RA | 3,316,300 | C→A | 5.9% | R377L (CGT→CTT) | glmM ← | phosphoglucosamine mutase |
| RA | 3,335,071 | A→T | 13.0% | V149V (GTA→GTT) | kdsD → | D‑arabinose 5‑phosphate isomerase |
| RA | 3,345,202 | C→A | 8.5% | D395Y (GAC→TAC) | arcB ← | aerobic respiration control sensor histidine protein kinase, cognate to two‑component response regulators ArcA and RssB |
| RA | 3,347,778 | G→A | 61.6% | intergenic (‑369/‑306) | yhcC ← / → gltB | putative Fe‑S oxidoreductase, Radical SAM superfamily protein/glutamate synthase, large subunit |
| RA | 3,354,405 | C→T | 92.7% | intergenic (+430/‑130) | gltD → / → gltF | glutamate synthase, 4Fe‑4S protein, small subunit/periplasmic protein |
| RA | 3,357,615 | A→C | 12.8% | N484H (AAT→CAT) | yhcD → | putative outer membrane fimbrial subunit usher protein |
| RA | 3,365,607 | G→T | 69.4% | I109I (ATC→ATA) | nanT ← | sialic acid transporter |
| RA | 3,371,372 | G→T | 11.3% | I65I (ATC→ATA) | rpsI ← | 30S ribosomal subunit protein S9 |
| RA | 3,373,985 | C→A | 93.3% | intergenic (+37/‑117) | yhcB → / → degQ | DUF1043 family inner membrane‑anchored protein/serine endoprotease, periplasmic |
| RA | 3,375,260 | G→T | 93.8% | D387Y (GAT→TAT) | degQ → | serine endoprotease, periplasmic |
| RA | 3,380,336 | C→A | 15.1% | A404A (GCG→GCT) | aaeB ← | p‑hydroxybenzoic acid efflux system component |
| RA | 3,388,112 | G→T | 8.8% | I502I (ATC→ATA) | yhdP ← | DUF3971‑AsmA2 domains protein |
| RA | 3,396,082 | G→T | 87.4% | R204S (CGT→AGT) | csrD ← | targeting factor for csrBC sRNA degradation |
| RA | 3,405,662 | C→A | 10.4% | I217I (ATC→ATA) | yhdJ → | DNA adenine methyltransferase, SAM‑dependent |
| RA | 3,409,129 | C→A | 8.4% | F246L (TTC→TTA) | acrF → | multidrug efflux system protein |
| RA | 3,409,403 | C→A | 11.8% | H338N (CAC→AAC) | acrF → | multidrug efflux system protein |
| RA | 3,411,456 | C→A | 27.9% | P1022Q (CCG→CAG) | acrF → | multidrug efflux system protein |
| RA | 3,422,390 | C→A | 8.9% | intergenic (‑269/‑205) | rrsD ← / → yrdA | 16S ribosomal RNA of rrnD operon/bacterial transferase hexapeptide domain protein |
| RA | 3,433,260 | G→T | 7.0% | I33I (ATC→ATA) | rplQ ← | 50S ribosomal subunit protein L17 |
| RA | 3,440,151 | G→T | 89.5% | I31I (ATC→ATA) | rpsN ← | 30S ribosomal subunit protein S14 |
| RA | 3,440,444 | G→T | 91.7% | S118S (TCC→TCA) | rplE ← | 50S ribosomal subunit protein L5 |
| RA | 3,440,832 | T→C | 35.5% | N99D (AAC→GAC) | rplX ← | 50S ribosomal subunit protein L24 |
| RA | 3,449,569 | C→A | 11.3% | I211I (ATC→ATA) | gspC → | general secretory pathway component, cryptic |
| RA | 3,455,111 | C→A | 11.0% | A95A (GCC→GCA) | gspH → | putative general secretory pathway component, cryptic |
| RA | 3,455,867 | C→A | 94.6% | I55I (ATC→ATA) | gspJ → | putative general secretory pathway component, cryptic |
| RA | 3,466,043 | C→A | 6.7% | A277A (GCG→GCT) | fusA ← | protein chain elongation factor EF‑G, GTP‑binding |
| RA | 3,473,139 | G→T | 93.5% | I276I (ATC→ATA) | kefB ← | potassium:proton antiporter |
| RA | 3,479,542 | C→A | 8.3% | H22N (CAT→AAT) | crp → | cAMP‑activated global transcription factor, mediator of catabolite repression |
| RA | 3,479,769 | A→T | 70.7% | E97D (GAA→GAT) | crp → | cAMP‑activated global transcription factor, mediator of catabolite repression |
| RA | 3,488,966 | G→C | 32.7% | A533P (GCC→CCC) | nirB → | nitrite reductase, large subunit, NAD(P)H‑binding |
| RA | 3,489,397 | C→A | 30.2% | F676L (TTC→TTA) | nirB → | nitrite reductase, large subunit, NAD(P)H‑binding |
| RA | 3,498,206 | C→T | 6.7% | intergenic (+64/+88) | frlR → / ← yhfS | putative DNA‑binding transcriptional regulator/FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein |
| RA | 3,498,214 | T→G | 12.1% | intergenic (+72/+80) | frlR → / ← yhfS | putative DNA‑binding transcriptional regulator/FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein |
| RA | 3,498,239 | A→C | 10.3% | intergenic (+97/+55) | frlR → / ← yhfS | putative DNA‑binding transcriptional regulator/FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein |
| RA | 3,501,571 | C→A | 32.4% | G127C (GGC→TGC) | php ← | phosphotriesterase homology protein |
| RA | 3,507,749 | G→T | 30.2% | H224N (CAT→AAT) | rpe ← | D‑ribulose‑5‑phosphate 3‑epimerase |
| RA | 3,519,657 | G→T | 100% | intergenic (‑149/‑171) | nudE ← / → yrfF | adenosine nucleotide hydrolase; substrates include Ap3A, Ap2A, ADP‑ribose, NADH/inner membrane protein |
| RA | 3,520,789 | G→T | 17.1% | R321L (CGA→CTA) | yrfF → | inner membrane protein |
| RA | 3,527,739 | C→A | 6.8% | F521L (TTC→TTA) | pck → | phosphoenolpyruvate carboxykinase |
| RA | 3,543,959 | G→T | 90.4% | A625E (GCG→GAG) | malP ← | maltodextrin phosphorylase |
| RA | 3,561,574 | C→A | 94.0% | W372L (TGG→TTG) | glgC ← | glucose‑1‑phosphate adenylyltransferase |
| RA | 3,595,522 | C→A | 24.1% | D196Y (GAC→TAC) | ftsE ← | putative ABC superfamily transporter ATP‑binding subunit |
| RA | 3,622,519 | C→A | 14.8% | R127L (CGA→CTA) | rbbA ← | ribosome‑associated ATPase: ATP‑binding protein/ATP‑binding membrane protein |
| RA | 3,632,965 | A→G | 27.5% | L39S (TTG→TCG) | uspB ← | universal stress (ethanol tolerance) protein B |
| RA | 3,662,660 | T→C | 33.4% | intergenic (‑112/‑292) | yhjA ← / → treF | putative cytochrome C peroxidase/cytoplasmic trehalase |
| RA | 3,668,380 | A→C | 6.9% | I79L (ATT→CTT) | yhjE → | MFS superfamily sugar transport 1 family protein |
| RA | 3,679,301 | T→G | 89.9% | Q1078P (CAG→CCG) | bcsC ← | cellulose synthase subunit |
| RA | 3,679,324 | C→A | 94.7% | M1070I (ATG→ATT) | bcsC ← | cellulose synthase subunit |
| RA | 3,680,910 | G→T | 33.0% | H542N (CAT→AAT) | bcsC ← | cellulose synthase subunit |
| RA | 3,681,219 | C→A | 11.8% | A439S (GCG→TCG) | bcsC ← | cellulose synthase subunit |
| RA | 3,717,788 | C→A | 71.5% | P297P (CCG→CCT) | glyQ ← | glycine tRNA synthetase, alpha subunit |
| RA | 3,721,485 | T→G | 9.5% | Y416S (TAC→TCC) | xylB ← | xylulokinase |
| RA | 3,738,431 | C→A | 91.8% | P90T (CCA→ACA) | yiaN → | 2,3‑diketo‑L‑gulonate TRAP transporter large permease protein |
| RA | 3,744,506 | C→A | 27.6% | G241G (GGG→GGT) | yiaT ← | putative outer membrane protein |
| RA | 3,762,852 | C→A | 8.9% | pseudogene (148/327 nt) | yibV → | pseudogene |
| RA | 3,774,382 | T→G | 16.6% | intergenic (+5/‑193) | lldD → / → trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| RA | 3,780,155 | C→A | 6.7% | I512I (ATC→ATA) | gpmM → | phosphoglycero mutase III, cofactor‑independent |
| RA | 3,785,915 | G→T | 93.6% | intergenic (‑4/+271) | kbl ← / ← yibB | glycine C‑acetyltransferase/YibB family protein, function unknown |
| RA | 3,808,726 | C→A | 5.5% | E135* (GAG→TAG) | pyrE ← | orotate phosphoribosyltransferase |
| RA | 3,810,195 | C→A | 92.6% | R54S (CGT→AGT) | yicC → | UPF0701 family protein |
| RA | 3,811,734 | T→G | 12.0% | A205A (GCT→GCG) | dinD → | DNA damage‑inducible protein |
| RA | 3,816,601 | A→T | 100% | H281L (CAC→CTC) | spoT → | bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase |
| RA | 3,818,010 | C→A | 93.1% | H46N (CAT→AAT) | trmH → | tRNA mG18‑2'‑O‑methyltransferase, SAM‑dependent |
| RA | 3,822,340 | A→C | 13.2% | Q12H (CAA→CAC) | xanP → | xanthine permease |
| RA | 3,825,702 | C→A | 91.9% | K732N (AAG→AAT) | yicI ← | putative alpha‑glucosidase |
| RA | 3,826,705 | T→A | 8.1% | Y398F (TAC→TTC) | yicI ← | putative alpha‑glucosidase |
| RA | 3,827,647 | A→C | 5.8% | L84R (CTC→CGC) | yicI ← | putative alpha‑glucosidase |
| RA | 3,830,197 | C→A | 70.1% | intergenic (+281/‑116) | yicT → / → setC | pseudogene/putative arabinose efflux transporter |
| RA | 3,830,311 | G→T | 83.4% | intergenic (+395/‑2) | yicT → / → setC | pseudogene/putative arabinose efflux transporter |
| RA | 3,837,177 | C→T | 13.5% | intergenic (‑28/‑147) | yicO ← / → ade | putative adenine permease/cryptic adenine deaminase |
| RA | 3,844,801 | C→A | 5.2% | M448I (ATG→ATT) | ilvB ← | acetolactate synthase 2 large subunit |
| RA | 3,849,854 | A→T | 25.3% | H27L (CAC→CTC) | yidI → | inner membrane protein |
| RA | 3,850,839 | G→T | 18.0% | P309Q (CCG→CAG) | yidJ ← | sulfatase/phosphatase superfamily protein |
| RA | 3,860,159 | C→A | 93.7% | P33P (CCG→CCT) | ibpB ← | heat shock chaperone |
| RA | 3,888,527 | G→T | 10.9% | L172L (CTG→CTT) | chrR → | chromate reductase, Class I, flavoprotein |
| RA | 3,904,487 | G→T | 23.4% | I133I (ATC→ATA) | pstS ← | periplasmic phosphate binding protein, high‑affinity |
| RA | 3,907,094 | G→A | 11.5% | intergenic (‑66/+96) | glmS ← / ← glmU | L‑glutamine:D‑fructose‑6‑phosphate aminotransferase/fused N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase |
| RA | 3,907,559 | A→T | 20.0% | P334P (CCT→CCA) | glmU ← | fused N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase |
| RA | 3,910,894 | C→A | 88.3% | M244I (ATG→ATT) | atpG ← | F1 sector of membrane‑bound ATP synthase, gamma subunit |
| RA | 3,911,608 | C→A | 6.1% | E6D (GAG→GAT) | atpG ← | F1 sector of membrane‑bound ATP synthase, gamma subunit |
| RA | 3,916,830 | C→A | 66.8% | D71Y (GAT→TAT) | rsmG ← | 16S rRNA m(7)G527 methyltransferase, SAM‑dependent; glucose‑inhibited cell‑division protein |
| RA | 3,919,832 | T→A | 15.0% | intergenic (‑17/+73) | mioC ← / ← asnC | FMN‑binding protein MioC/transcriptional activator of asnA; autorepressor |
| RA | 3,921,982 | T→A | 5.9% | T328S (ACT→TCT) | viaA ← | stimulator of RavA ATPase activity; von Willebrand factor domain protein |
| RA | 3,926,774 | G→T | 11.2% | D22Y (GAT→TAT) | rbsD → | putative cytoplasmic sugar‑binding protein |
| RA | 3,926,831 | G→T | 33.8% | D41Y (GAT→TAT) | rbsD → | putative cytoplasmic sugar‑binding protein |
| RA | 3,927,123 | C→A | 16.6% | T138K (ACG→AAG) | rbsD → | putative cytoplasmic sugar‑binding protein |
| RA | 3,927,918 | G→T | 12.8% | D261Y (GAT→TAT) | rbsA → | fused D‑ribose transporter subunits of ABC superfamily: ATP‑binding components |
| RA | 3,928,395 | G→T | 8.7% | D420Y (GAT→TAT) | rbsA → | fused D‑ribose transporter subunits of ABC superfamily: ATP‑binding components |
| RA | 3,932,409 | G→T | 12.0% | D275Y (GAT→TAT) | rbsR → | transcriptional repressor of ribose metabolism |
| RA | 3,952,842 | A→C | 10.9% | intergenic (+37/+50) | ilvC → / ← ppiC | ketol‑acid reductoisomerase, NAD(P)‑binding/peptidyl‑prolyl cis‑trans isomerase C (rotamase C) |
| RA | 3,960,036 | G→A | 100% | R87H (CGC→CAC) | rho → | transcription termination factor |
| RA | 3,966,854 | C→A | 33.2% | R325S (CGT→AGT) | rffG → | dTDP‑glucose 4,6‑dehydratase |
| RA | 3,969,710 | G→T | 20.5% | G25C (GGT→TGT) | wzxE → | O‑antigen translocase |
| RA | 3,988,075 | T→A | 30.6% | V65E (GTG→GAG) | yifL → | putative lipoprotein |
| RA | 3,991,234 | T→A | 7.5% | L231* (TTG→TAG) | yigB → | 5‑amino‑6‑(5‑phospho‑D‑ribitylamino)uracil phosphatase; pyrimidine phosphatase; riboflavin synthesis |
| RA | 3,994,076 | A→T | 74.8% | L114* (TTA→TAA) | yigE ← | DUF2233 family protein |
| RA | 3,994,247 | A→T | 93.9% | V57E (GTG→GAG) | yigE ← | DUF2233 family protein |
| RA | 4,009,705 | G→A | 94.1% | intergenic (‑176/‑86) | ysgA ← / → udp | putative carboxymethylenebutenolidase/uridine phosphorylase |
| RA | 4,037,406 | T→A | 9.9% | intergenic (+2/‑153) | dsbA → / → yihF | periplasmic protein disulfide isomerase I/DUF945 family protein |
| RA | 4,056,018 | T→A | 93.4% | F138I (TTC→ATC) | yihN → | MFS transporter family protein |
| RA | 4,062,424 | G→T | 91.2% | I71I (ATC→ATA) | yihQ ← | alpha‑glucosidase |
| RA | 4,066,133 | T→G | 93.4% | S267R (AGC→CGC) | yihU ← | gamma‑hydroxybutyrate dehydrogenase, NADH‑dependent |
| RA | 4,068,208 | C→A | 100% | G60G (GGC→GGA) | yihW → | DeoR family putative transcriptional regulator |
| RA | 4,079,023 | A→G | 5.1% | S54P (TCC→CCC) | fdoG ← | formate dehydrogenase‑O, large subunit |
| RA | 4,085,600 | G→T | 26.9% | Q43K (CAA→AAA) | frvB ← | putative PTS enzyme, IIB component/IIC component |
| RA | 4,094,362 | C→A | 92.9% | W181L (TGG→TTG) | cpxA ← | sensory histidine kinase in two‑component regulatory system with CpxR |
| RA | 4,097,822 | G→T | 92.8% | E115* (GAA→TAA) | pfkA → | 6‑phosphofructokinase I |
| RA | 4,118,210 | G→T | 11.2% | T38T (ACC→ACA) | metJ ← | transcriptional repressor, S‑adenosylmethionine‑binding |
| RA | 4,127,022 | T→G | 92.0% | E188D (GAA→GAC) | yijF ← | DUF1287 family protein |
| RA | 4,176,823 | G→T | 85.7% | D516Y (GAC→TAC) | rpoC → | RNA polymerase, beta prime subunit |
| RA | 4,177,037 | T→A | 14.5% | L587Q (CTG→CAG) | rpoC → | RNA polymerase, beta prime subunit |
| RA | 4,178,401 | G→T | 12.8% | D1042Y (GAC→TAC) | rpoC → | RNA polymerase, beta prime subunit |
| RA | 4,187,518 | G→T | 20.1% | D230Y (GAT→TAT) | nudC → | NADH pyrophosphatase |
| RA | 4,211,576 | G→T | 67.9% | S280R (AGC→AGA) | arpA ← | ankyrin repeat protein |
| RA | 4,211,803 | G→A | 89.4% | P205S (CCT→TCT) | arpA ← | ankyrin repeat protein |
| RA | 4,213,666 | C→A | 6.4% | intergenic (‑110/‑90) | iclR ← / → metH | transcriptional repressor/homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent |
| RA | 4,230,913 | A→T | 86.3% | W424R (TGG→AGG) | xylE ← | D‑xylose transporter |
| RA | 4,242,023 | G→T | 18.7% | pseudogene (1135/1323 nt) | yjbI → | pseudogene, SopA‑related, pentapeptide repeats‑containing |
| RA | 4,250,324 | G→A | 22.9% | A26T (GCA→ACA) | yjbL → | uncharacterized protein |
| RA | 4,265,064 | C→A | 35.0% | intergenic (‑95/‑335) | yjcB ← / → yjcC | putative inner membrane protein/putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
| RA | 4,271,025 | T→A | 13.0% | I373N (ATC→AAC) | yjcE → | putative cation/proton antiporter |
| RA | 4,274,926 | A→C | 73.5% | I72M (ATT→ATG) | yjcH ← | DUF485 family inner membrane protein |
| RA | 4,279,051 | G→T | 15.0% | E454* (GAG→TAG) | nrfA → | nitrite reductase, formate‑dependent, cytochrome |
| RA | 4,290,080 | G→T | 88.1% | I256I (ATC→ATA) | mdtP ← | outer membrane factor of efflux pump |
| RA | 4,297,846 | C→A | 91.2% | M150I (ATG→ATT) | alsE ← | allulose‑6‑phosphate 3‑epimerase |
| RA | 4,303,614 | T→A | 86.2% | *150R (TGA→AGA) | rpiB → | ribose 5‑phosphate isomerase B/allose 6‑phosphate isomerase |
| RA | 4,306,969 | T→A | 10.8% | N23Y (AAC→TAC) | phnM ← | ribophosphonate triphosphate hydrolase |
| RA | 4,312,246 | C→A | 17.6% | intergenic (‑7/+14) | phnF ← / ← phnE | putative DNA‑binding transcriptional regulator of phosphonate uptake and biodegradation/defective phosphonate ABC transporter permease;transport; Transport of small molecules: Anions; membrane channel protein component of Pn transporter; membrane component of ABC superfamily |
| RA | 4,312,726 | G→T | 23.4% | pseudogene (322/426 nt) | phnE ← | defective phosphonate ABC transporter permease;transport; Transport of small molecules: Anions; membrane channel protein component of Pn transporter; membrane component of ABC superfamily |
| RA | 4,315,964 | T→C | 6.3% | intergenic (‑406/+252) | yjdN ← / ← yjdM | metalloprotein superfamily protein/zinc‑ribbon family protein |
| RA | 4,341,023 | A→T | 32.9% | Y153N (TAC→AAC) | dcuS ← | sensory histidine kinase in two‑component regulatory system with DcuR, regulator of anaerobic fumarate respiration |
| RA | 4,344,298 | G→T | 5.8% | I79I (ATC→ATA) | lysU ← | lysine tRNA synthetase, inducible |
| RA | 4,353,585 | C→T | 6.2% | L425L (TTG→TTA) | dsbD ← | fused thiol:disulfide interchange protein: activator of DsbC/conserved protein |
| RA | 4,356,174 | A→T | 27.4% | I139I (ATT→ATA) | dcuA ← | C4‑dicarboxylate antiporter |
| RA | 4,365,977 | T→A | 9.7% | A154A (GCT→GCA) | efp → | polyproline‑specific translation elongation factor EF‑P |
| RA | 4,382,806 | T→A | 12.6% | Q360L (CAA→CTA) | queG ← | epoxyqueuosine reductase, cobalamine‑stimulated; queosine biosynthesis |
| RA | 4,388,902 | G→T | 93.8% | A558A (GCG→GCT) | mutL → | methyl‑directed mismatch repair protein |
| RA | 4,396,598 | A→T | 92.8% | E43V (GAA→GTA) | rnr → | exoribonuclease R, RNase R |
| RA | 4,417,551 | A→C | 29.9% | pseudogene (41/402 nt) | ytfA → | pseudogene, related to transcriptional regulators |
| RA | 4,432,682 | G→T | 20.9% | E162* (GAA→TAA) | tamA → | translocation and assembly module for autotransporter export, outer membrane subunit |
| RA | 4,458,254 | T→A | 92.8% | V271V (GTT→GTA) | mgtA → | magnesium transporter |
| RA | 4,458,609 | G→T | 93.2% | D390Y (GAT→TAT) | mgtA → | magnesium transporter |
| RA | 4,460,286 | G→T | 6.0% | intergenic (+148/+58) | mgtA → / ← ridA | magnesium transporter/enamine/imine deaminase, reaction intermediate detoxification |
| RA | 4,461,726 | C→A | 6.3% | D163Y (GAC→TAC) | pyrB ← | aspartate carbamoyltransferase, catalytic subunit |
| RA | 4,464,572 | G→T | 11.2% | intergenic (+38/‑107) | bdcR → / → tabA | transcriptional repressor for divergent bdcA/biofilm modulator regulated by toxins; DUF386 family protein, cupin superfamily |
| RA | 4,468,165 | A→G | 57.7% | intergenic (‑37/‑125) | argI ← / → rraB | ornithine carbamoyltransferase 1/protein inhibitor of RNase E |
| RA | 4,469,550 | G→A | 85.7% | A2T (GCT→ACT) | yjgN → | DUF898 family inner membrane protein |
| RA | 4,470,017 | G→A | 93.6% | M157I (ATG→ATA) | yjgN → | DUF898 family inner membrane protein |
| RA | 4,471,490 | G→T | 5.3% | P722Q (CCG→CAG) | valS ← | valyl‑tRNA synthetase |
| RA | 4,489,542 | A→T | 13.7% | pseudogene (810/942 nt) | yjgX ← | pseudogene fragment |
| RA | 4,505,438 | C→A | 6.8% | D353Y (GAC→TAC) | fecA ← | ferric citrate outer membrane transporter |
| RA | 4,506,776 | C→A | 10.9% | P253P (CCG→CCT) | fecR ← | FecI pro‑sigma factor; transmembrane signal transducer for ferric citrate transport; periplasmic FecA:ferric citrate sensor and cytoplasmic FecI ECF sigma factor activator |
| RA | 4,511,877 | G→A | 16.8% | intergenic (‑40/+67) | yjhF ← / ← yjhG | putative transporter/putative dehydratase |
| RA | 4,512,693 | T→A | 100% | K407* (AAG→TAG) | yjhG ← | putative dehydratase |
| RA | 4,516,734 | G→T | 26.7% | F207L (TTC→TTA) | sgcE ← | putative epimerase |
| RA | 4,525,234 | G→A | 87.5% | pseudogene (415/1029 nt) | yjhR → | pseudogene, helicase family; putative frameshift suppressor |
| RA | 4,531,143 | A→T | 100% | I124F (ATT→TTT) | fimB → | tyrosine recombinase/inversion of on/off regulator of fimA |
| RA | 4,534,644 | C→A | 6.2% | S175Y (TCT→TAT) | fimC → | periplasmic chaperone |
| RA | 4,555,156 | G→T | 33.6% | A171E (GCG→GAG) | yjiM ← | putative 2‑hydroxyglutaryl‑CoA dehydratase |
| RA | 4,556,296 | C→T | 14.6% | Q256Q (CAG→CAA) | yjiN ← | zinc‑type alcohol dehydrogenase‑like protein |
| RA | 4,558,657 | G→T | 6.1% | intergenic (‑321/‑158) | mdtM ← / → yjiP | multidrug efflux system protein/pseudogene, transposase_31 family protein |
| RA | 4,562,043 | C→A | 93.6% | intergenic (+311/‑188) | yjiS → / → yjiT | DUF1127 family protein/pseudogene |
| RA | 4,584,381 | G→T | 94.0% | I53I (ATC→ATA) | yjjL ← | L‑galactonate transporter |
| RA | 4,585,338 | A→T | 32.3% | S111T (TCT→ACT) | yjjM ← | yjjMN operon transcriptional activator |
| RA | 4,601,014 | T→C | 11.7% | intergenic (+194/‑199) | prfC → / → osmY | peptide chain release factor RF‑3/periplasmic protein |
| RA | 4,604,616 | C→A | 8.2% | G249C (GGC→TGC) | yjjW ← | putative pyruvate formate lyase activating enzyme |
| RA | 4,605,290 | A→T | 11.1% | L24Q (CTG→CAG) | yjjW ← | putative pyruvate formate lyase activating enzyme |
| JC | 4,618,549 | Δ116 bp | 5.8% | intergenic (+185/+8) | nadR → / ← yjjK | trifunctional protein: nicotinamide mononucleotide adenylyltransferase, ribosylnicotinamide kinase, transcriptional repressor/putative transporter subunit of ABC superfamily: ATP‑binding component |
| RA | 4,622,314 | T→A | 7.2% | W589R (TGG→AGG) | slt → | lytic murein transglycosylase, soluble |
| RA | 4,625,288 | T→C | 27.0% | intergenic (‑161/‑50) | rob ← / → creA | right oriC‑binding transcriptional activator, AraC family/putative periplasmic protein |
| RA | 4,626,235 | G→T | 10.5% | E138* (GAA→TAA) | creB → | response regulator in two‑component regulatory system with CreC |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP009273 | 373834 | 375142 | 1309 | 150 [147] | [147] 149 | frmA–[frmR] | frmA,[frmR] |
| * | * | ÷ | CP009273 | 4100613 | 4101509 | 897 | 151 [144] | [148] 150 | [cdh]–tpiA | [cdh],tpiA |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 360104 = | 162 (0.670) | 178 (0.740) | 102/278 | NT | 52.4% | intergenic (‑38/+557) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | = 360286 | NA (NA) | intergenic (‑220/+375) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor | |||||
| * | ? | CP009273 | = 360278 | NA (NA) | 38325 (168.860) +TTAATTAA |
204/262 | NT | 99.5% | intergenic (‑212/+383) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | = 361823 | 218 (0.900) | coding (831/834 nt) | mhpR | mhp operon transcriptional activator | |||||
| * | ? | CP009273 | 360652 = | 207 (0.860) | 38174 (237.660) +46 bp |
186/186 | NT | 99.6% | intergenic (‑586/+9) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | = 1317577 | 210 (0.870) | coding (101/882 nt) | yciV | PHP domain protein | |||||
| * | ? | CP009273 | = 361823 | 218 (0.900) | 22 (0.100) +TTAATTAA |
13/262 | NT | 10.1% | coding (831/834 nt) | mhpR | mhp operon transcriptional activator |
| ? | CP009273 | 4033991 = | 200 (0.830) | noncoding (115/120 nt) | rrfA | 5S ribosomal RNA of rrnA operon | |||||
| * | ? | CP009273 | 376714 = | NA (NA) | 5 (0.020) | 5/276 | NT | NA | pseudogene (2/416 nt) | yaiX | pseudogene, interrupted by IS2A, acetyltransferase homolog; nonfunctional; interruped by IS2; putative transferase |
| ? | CP009273 | = 378045 | NA (NA) | intergenic (+10/+2) | insD1/yaiX | IS2 transposase TnpB/pseudogene, interrupted by IS2A, acetyltransferase homolog; nonfunctional; interruped by IS2; putative transferase | |||||
| * | ? | CP009273 | 376716 = | NA (NA) | 31 (0.130) | 22/278 | NT | 15.7% | intergenic (‑1/‑91) | yaiX/insC1 | pseudogene, interrupted by IS2A, acetyltransferase homolog; nonfunctional; interruped by IS2; putative transferase/IS2 repressor TnpA |
| ? | CP009273 | = 386403 | 167 (0.690) | pseudogene (697/1458 nt) | yaiT | pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein | |||||
| * | ? | CP009273 | 376716 = | NA (NA) | 225 (0.930) | 125/278 | NT | 96.6% | intergenic (‑1/‑91) | yaiX/insC1 | pseudogene, interrupted by IS2A, acetyltransferase homolog; nonfunctional; interruped by IS2; putative transferase/IS2 repressor TnpA |
| ? | CP009273 | 566411 = | 8 (0.030) | coding (63/552 nt) | ybcL | inactive polymorphonuclear leukocyte migration suppressor; DLP12 prophage; secreted protein, UPF0098 family | |||||
| * | ? | CP009273 | = 378046 | NA (NA) | 41 (0.170) | 31/278 | NT | 19.4% | intergenic (+11/+1) | insD1/yaiX | IS2 transposase TnpB/pseudogene, interrupted by IS2A, acetyltransferase homolog; nonfunctional; interruped by IS2; putative transferase |
| ? | CP009273 | 386399 = | 170 (0.710) | pseudogene (693/1458 nt) | yaiT | pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein | |||||
| * | ? | CP009273 | = 378046 | NA (NA) | 184 (0.760) | 111/278 | NT | 95.8% | intergenic (+11/+1) | insD1/yaiX | IS2 transposase TnpB/pseudogene, interrupted by IS2A, acetyltransferase homolog; nonfunctional; interruped by IS2; putative transferase |
| ? | CP009273 | = 566415 | 8 (0.030) | coding (67/552 nt) | ybcL | inactive polymorphonuclear leukocyte migration suppressor; DLP12 prophage; secreted protein, UPF0098 family | |||||
| * | ? | CP009273 | 776825 = | 137 (0.570) | 22 (0.090) +G |
6/276 | NT | 12.2% | noncoding (1/76 nt) | lysZ | tRNA‑Lys |
| ? | CP009273 | = 2514488 | 181 (0.750) | noncoding (216/1345 nt) | IS186 | repeat region | |||||
| * | ? | CP009273 | 1203246 = | 16 (0.070) | 190 (0.890) | 114/246 | NT | 92.7% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | 1205075 = | 16 (0.080) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 1203261 | 17 (0.070) | 196 (0.920) | 110/246 | NT | 92.7% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | = 1205058 | 16 (0.080) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | 1462167 = | NA (NA) | 11 (0.050) | 10/278 | NT | NA | noncoding (1331/1331 nt) | IS2 | repeat region |
| ? | CP009273 | = 1463498 | NA (NA) | pseudogene (1/53 nt) | ydbA | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 | |||||
| * | ? | CP009273 | 1462167 = | NA (NA) | 10 (0.040) | 9/278 | NT | NA | noncoding (1331/1331 nt) | IS2 | repeat region |
| ? | CP009273 | = 1463499 | NA (NA) | pseudogene (2/53 nt) | ydbA | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 | |||||
| * | ? | CP009273 | 1635219 = | 7 (0.030) | 158 (0.670) | 95/274 | NT | 95.8% | intergenic (‑377/+377) | essQ/cspB | Qin prophage; putative S lysis protein/Qin prophage; cold shock protein |
| ? | CP009273 | = 2063752 | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||
| * | ? | CP009273 | = 1635223 | 6 (0.020) | 200 (0.830) | 113/278 | NT | 97.1% | intergenic (‑381/+373) | essQ/cspB | Qin prophage; putative S lysis protein/Qin prophage; cold shock protein |
| ? | CP009273 | = 1645805 | NA (NA) | intergenic (+11/‑3) | insD1/intQ | IS2 transposase TnpB;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related/pseudogene, Qin prophage; phage integrase family;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 1645804 | NA (NA) | 21 (0.090) | 17/276 | NT | 9.8% | intergenic (+10/‑4) | insD1/intQ | IS2 transposase TnpB;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related/pseudogene, Qin prophage; phage integrase family;Phage or Prophage Related |
| ? | CP009273 | = 2309096 | 194 (0.810) | coding (2130/2673 nt) | rcsD | phosphotransfer intermediate protein in two‑component regulatory system with RcsBC | |||||
| * | ? | CP009273 | 2309091 = | 189 (0.780) | 45 (0.190) | 31/278 | NT | 19.2% | coding (2125/2673 nt) | rcsD | phosphotransfer intermediate protein in two‑component regulatory system with RcsBC |
| ? | CP009273 | = 2991050 | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||
| * | ? | CP009273 | 2989719 = | NA (NA) | 14 (0.060) +C |
6/276 | NT | NA | pseudogene (1/399 nt) | ygeO | pseudogene, orgA homolog, part of T3SS PAI ETT2 remnant |
| ? | CP009273 | = 2991050 | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||
| * | ? | CP009273 | 3179453 = | NA (NA) | 4 (0.020) | 3/278 | NT | NA | intergenic (+5/‑93) | yqiG/insC1 | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein/IS2 repressor TnpA |
| ? | CP009273 | = 3180785 | NA (NA) | pseudogene (6/2445 nt) | yqiG | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein | |||||