New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3904966	200 (0.750)	13 (0.050)	10/278	NT	6.1%	intergenic (‑81/+233)	pstS/glmS	periplasmic phosphate binding protein, high‑affinity/L‑glutamine:D‑fructose‑6‑phosphate aminotransferase
	?	CP009273	4487998 =	NA (NA)					intergenic (+241/‑91)	intB/insC1	pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase/IS2 repressor TnpA

AAGGTCGCGGCGACAACAGTTGCGACGGTGGTACGCATAACTTTCATAATGTCTCCTGGGAGGATTCATAAAGCATTGTTTGTTGGCTACGAGAAGCAAAATAGGACAAACAGGTGACAGTTATATGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/3904839‑3904966 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTAC  >  CP009273/4487998‑4488129                                                                                                                                                                                                                                                                      AAGGTCGCGGCGACAACAGTTGCGACGGTGGTACGCATAACTTTCATAATGTCTCCTGGGAGGATTCATAAAGCATTGTTTGTTGGCTACGAGAAGCAAAATAGGACAAACAGGTGACAGTTATATGTTAGACTGGCCCCCTGAATCTCC                                                                                                                <  1:837168/150‑1   GGTCGCGGCGACAACAGTTGCGACGGTGGTACGCATAACTTTCATAATGTCTCCTGGGAGGATTCATAAAGCATTGTTTGTTGGCTACGAGAAGCAAAATAGGACAAACAGGTGACAGTTATATGTTAGACTGGCCCCCTGAATCTCCAG                                                                                                              >  1:4010534/1‑150   GGTCGCGGCGACAACAGTTGCGACGGTGGTACGCATAACTTTCATAATGTCTCCTGGGAGGATTCATAAAGCATTGTTTGTTGGCTACGAGAAGCAAAATAGGACAAACAGGTGACAGTTATATGTTAGACTGGCCCCCTGAATCTCCAG                                                                                                              >  1:430317/1‑150            GACAACAGTTGCGACGGTGGTACGCATAACTTTCATAATGTCTCCTGGGAGGATTCATAAAGCATTGTTTGTTGGCTACGAGAAGCAAAATAGGACAAACAGGTGACAGTTATATGTTAGACTGGCCCCCTGAATCTCCAGACAACCAAT                                                                                                     >  2:2915366/1‑150               AACAGTTGCGACGGTGGTACGCATAACTTTCATAATGTCTCCTGGGAGGATTCATAAAGCATTGTTTGTTGGCTACGAGAAGCAAAATAGGACAAACAGGTGACAGTTATATGTTAGACTGGCCCCCTGAATCTCCAGACAACCAATATC                                                                                                  <  2:2271216/150‑1               AACAGTTGCGACGGTGGTACGCATAACTTTCATAATGTCTCCTGGGAGGATTCATAAAGCATTGTTTGTTGGCTACGAGAAGCAAAATAGGACAAACAGGTGACAGTTATATGTTAGACTGGCCCCCTGAATCTCCAGACAACCAATATC                                                                                                  <  2:2271770/150‑1                          CGGTGGTACGCATAACTTTCATAATGTCTCCTGGGAGGATTCATAAAGCATTGTTTGTTGGCTACGAGAAGCAAAATAGGACAAACAGGTGACAGTTATATGTTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAG                                                                                       <  2:4383379/150‑1                                                        CTGGGAGGATTCATAAAGCATTGTTTGTTGGCTACGAGAAGCAAAATAGGACAAACAGGTGACAGTTATATGTTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAG                                                         >  1:4035178/1‑150                                                                      AAAGCATTGTTTGTTGGCTACGAGAAGCAAAATAGGACAAACAGGTGACAGTTATATGTTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAG                                           <  1:2269989/150‑1                                                                              GTTTGTTGGCTACGAGAAGCAAAATAGGACAAACAGGTGACAGTTATATGTTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGA                                   <  2:1942680/150‑1                                                                                              AAGCAAAATAGGACAAACAGGTGACAGTTATATGTTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAG                   >  2:2648125/1‑150                                                                                              AAGCAAAATAGGACAAACAGGTGACAGTTATATGTTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAG                   >  2:2648273/1‑150                                                                                                               CAGGTGACAGTTATATGTTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTAC  >  1:562639/1‑150                                                                                                                                                                                                                                                                      AAGGTCGCGGCGACAACAGTTGCGACGGTGGTACGCATAACTTTCATAATGTCTCCTGGGAGGATTCATAAAGCATTGTTTGTTGGCTACGAGAAGCAAAATAGGACAAACAGGTGACAGTTATATGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/3904839‑3904966 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTAC  >  CP009273/4487998‑4488129

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.