mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 15 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3646590 | NA (NA) | 6 (0.020) | 4/278 | NT | 3.9% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | CP009273 | = 3796552 | 149 (0.560) | coding (946/1080 nt) | waaB | UDP‑D‑galactose:(glucosyl)lipopolysaccharide‑1, 6‑D‑galactosyltransferase | |||||
| * | ? | CP009273 | = 3180785 | NA (NA) | 8 (0.030) | 5/278 | NT | 3.8% | pseudogene (6/2445 nt) | yqiG | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein |
| ? | CP009273 | 3360967 = | 203 (0.760) | coding (683/717 nt) | yhcF | putative transcriptional regulator | |||||
| * | ? | CP009273 | = 3180785 | NA (NA) | 10 (0.040) | 10/278 | NT | 4.0% | pseudogene (6/2445 nt) | yqiG | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein |
| ? | CP009273 | 3284621 = | 243 (0.910) | coding (2449/2517 nt) | yraJ | putative outer membrane protein | |||||
| * | ? | CP009273 | 3179456 = | NA (NA) | 7 (0.030) | 6/276 | NT | 2.9% | intergenic (+8/‑90) | yqiG/insC1 | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein/IS2 repressor TnpA |
| ? | CP009273 | = 3284626 | 236 (0.880) | coding (2454/2517 nt) | yraJ | putative outer membrane protein | |||||
| * | ? | CP009273 | 3179455 = | NA (NA) | 5 (0.020) | 4/278 | NT | 2.3% | intergenic (+7/‑91) | yqiG/insC1 | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein/IS2 repressor TnpA |
| ? | CP009273 | = 3360971 | 208 (0.780) | coding (687/717 nt) | yhcF | putative transcriptional regulator | |||||
| * | ? | CP009273 | = 2897461 | 376 (1.400) | 3 (0.010) | 3/220 | NT | 1.1% | intergenic (+728/+645) | ygcE/queE | putative kinase/7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis |
| ? | CP009273 | 2897645 = | 264 (1.250) | intergenic (+912/+461) | ygcE/queE | putative kinase/7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis | |||||
| * | ? | CP009273 | = 2871150 | 498 (1.860) | 5 (0.020) | 5/242 | NT | 1.2% | intergenic (+173/+778) | iap/ygbF | aminopeptidase in alkaline phosphatase isozyme conversion/CRISPR adaptation ssRNA endonuclease |
| ? | CP009273 | 2871456 = | 358 (1.540) | intergenic (+479/+472) | iap/ygbF | aminopeptidase in alkaline phosphatase isozyme conversion/CRISPR adaptation ssRNA endonuclease | |||||
| * | ? | CP009273 | = 2811301 | 219 (0.820) | 4 (0.020) | 4/238 | NT | 1.7% | intergenic (‑82/+117) | argQ/argZ | tRNA‑Arg/tRNA‑Arg |
| ? | CP009273 | 2811851 = | 269 (1.170) | noncoding (58/77 nt) | argV | tRNA‑Arg | |||||
| * | ? | CP009273 | = 2310161 | 292 (1.090) | 12 (0.040) | 10/278 | NT | 3.9% | coding (506/651 nt) | rcsB | response regulator in two‑component regulatory system with RcsC and YojN |
| ? | CP009273 | = 2991050 | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||
| * | ? | CP009273 | 2086467 = | 275 (1.030) | 4 (0.020) | 3/250 | NT | 1.6% | coding (589/1071 nt) | hisC | histidinol‑phosphate aminotransferase |
| ? | CP009273 | = 2086462 | 248 (1.030) | coding (584/1071 nt) | hisC | histidinol‑phosphate aminotransferase | |||||