breseq  version 0.35.4  revision f352f80f4bc9 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence	position	mutation	annotation	gene	description
RA	44,301	(T)9→8	intergenic (+132/‑359)	oprD_1 → / → czcR_2	Porin D/Transcriptional activator protein CzcR
RA	120,983	(T)9→8	intergenic (+280/+92)	polA → / ← engB	DNA polymerase I/putative GTP‑binding protein EngB
RA	179,484	T→C	C316R (TGC→CGC)	CJ019_00182 →	hypothetical protein
RA	690,144	A→G	intergenic (+21/‑2438)	bauC → / → PP_RS08750	Putative 3‑oxopropanoate dehydrogenase/tRNA‑Val
RA	1,806,734	C→A	S11R (AGC→AGA)	yeiG →	S‑formylglutathione hydrolase YeiG
RA	3,440,343	A→C	S18R (AGC→CGC)	CJ019_03266 →	hypothetical protein
JC	4,257,352	+GCGGCCGC	intergenic (‑281/+7)	CJ019_03991 ← / ← CJ019_03994	putative ABC transporter ATP‑binding protein/hypothetical protein
RA	4,266,097	A→C	D147A (GAC→GCC)	CJ019_04001 →	putative FAD‑linked oxidoreductase
MC JC	4,963,801	Δ8,879 bp		[CJ019_04659]–[flgG]	[CJ019_04659], fabH, CJ019_04661, CJ019_04662, CJ019_04663, flgI, flgH, [flgG]
RA	5,756,060	(A)6→5	coding (781/834 nt)	CJ019_05400 →	hypothetical protein

Unassigned missing coverage evidence
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	ACB122	87980	88065	86	27 [23]	[22] 26	[CJ019_00094]–[CJ019_00095]	[CJ019_00094],[CJ019_00095]
*	*	÷	ACB122	517190	517290	101	31 [16]	[24] 26	tyrS/birA	Tyrosine‑‑tRNA ligase/Bifunctional ligase/repressor BirA
*	*	÷	ACB122	674250	674419	170	25 [21]	[24] 27	[nimR_1]–[mcpH_2]	[nimR_1],[mcpH_2]
*	*	÷	ACB122	1149276	1149477	202	26 [24]	[23] 26	[sasA_4]	[sasA_4]
*	*	÷	ACB122	1585606	1585703	98	25 [24]	[22] 25	CJ019_01493	hypothetical protein
*	*	÷	ACB122	1914556	1914645	90	25 [23]	[24] 25	[ppsC_1]–[CJ019_01830]	[ppsC_1],[CJ019_01830]
*	*	÷	ACB122	1923361	1923557	197	25 [24]	[23] 25	[apeB]	[apeB]
*	*	÷	ACB122	2288843	2288948	106	25 [23]	[24] 25	[CJ019_02172]	[CJ019_02172]
*	*	÷	ACB122	3046201	3046357	157	25 [24]	[24] 25	[rcsC_5]–[degU_2]	[rcsC_5],[degU_2]
*	*	÷	ACB122	4163779	4163866	88	25 [18]	[24] 26	katG/leuO_2	Catalase‑peroxidase/HTH‑type transcriptional regulator LeuO
*	*	÷	ACB122	4344772	4344837	66	25 [19]	[23] 26	nmoA	Nitronate monooxygenase
*	*	÷	ACB122	4732376	4732543	168	25 [24]	[24] 28	[gltA]–[CJ019_04468]	[gltA],[CJ019_04468]
*	*	÷	ACB122	4846329	4846455	127	26 [23]	[23] 29	recR/ybaB	Recombination protein RecR/Nucleoid‑associated protein YbaB
*	*	÷	ACB122	5186670	5186795	126	26 [23]	[24] 25	[CJ019_04881]	[CJ019_04881]
*	*	÷	ACB122	5193567	5193691	125	25 [23]	[24] 25	[gltR_4]–[CJ019_04888]	[gltR_4],[CJ019_04888]
*	*	÷	ACB122	5250752	5250879	128	26 [23]	[24] 27	[CJ019_04947]–[CJ019_04948]	[CJ019_04947],[CJ019_04948]
*	*	÷	ACB122	5550417	5550592	176	25 [24]	[23] 25	CJ019_05227/purA	hypothetical protein/Adenylosuccinate synthetase
*	*	÷	ACB122	5674004	5674132	129	25 [24]	[23] 25	CJ019_05328/CJ019_05329	hypothetical protein/hypothetical protein
*	*	÷	ACB122	5890374	5890489	116	27 [23]	[23] 25	CJ019_05517/czcA_3	hypothetical protein/Cobalt‑zinc‑cadmium resistance protein CzcA