mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 22 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | ACB122 | 3,440,367 | 0 | T | G | 68.0% | ‑4.7 / 14.5 | 26 | W26G (TGG→GGG) | CJ019_03266 | hypothetical protein |
| * | ACB122 | 3,440,363 | 0 | A | C | 57.7% | 4.3 / 18.4 | 26 | A24A (GCA→GCC) | CJ019_03266 | hypothetical protein |
| * | ACB122 | 5,989,859 | 0 | C | G | 54.5% | 3.1 / 12.0 | 11 | intergenic (‑313/+28) | nfdA/CJ019_05610 | N‑substituted formamide deformylase/Arylesterase |
| * | ACB122 | 1,835,849 | 0 | T | G | 52.6% | 7.3 / 19.0 | 19 | R667R (CGA→CGC) | barA | Signal transduction histidine‑protein kinaseBarA |
| * | ACB122 | 1,740,407 | 0 | T | G | 46.5% | 4.6 / 15.6 | 43 | E53A (GAG→GCG) | CJ019_01643 | hypothetical protein |
| * | ACB122 | 3,875,878 | 0 | A | C | 40.0% | 80.9 / 14.8 | 70 | T298P (ACC→CCC) | ttgI_2 | Toluene efflux pump outer membrane protein TtgI |
| * | ACB122 | 1,537,415 | 0 | C | G | 34.5% | 36.6 / 15.2 | 30 | A388G (GCG→GGG) | mdfA | Multidrug transporter MdfA |
| * | ACB122 | 5,223,159 | 0 | G | C | 34.2% | 42.6 / 12.3 | 38 | intergenic (‑133/+43) | cntO_7/CJ019_04917 | Metal‑pseudopaline receptor CntO/hypothetical protein |
| * | ACB122 | 2,970,036 | 0 | G | C | 31.2% | 63.9 / 15.5 | 48 | intergenic (+99/+50) | CJ019_02800/exuT | hypothetical protein/Hexuronate transporter |
| * | ACB122 | 1,537,421 | 0 | T | G | 30.0% | 40.2 / 14.6 | 30 | V390G (GTG→GGG) | mdfA | Multidrug transporter MdfA |
| * | ACB122 | 1,115,447 | 0 | C | G | 29.8% | 110.5 / 20.8 | 70 | S243W (TCG→TGG) | lptG | Lipopolysaccharide export system permeaseprotein LptG |
| * | ACB122 | 5,384,407 | 0 | C | G | 29.5% | 77.6 / 12.9 | 44 | intergenic (+528/‑330) | CJ019_05064/CJ019_05067 | putative protein/hypothetical protein |
| * | ACB122 | 1,115,444 | 0 | T | G | 27.5% | 112.8 / 11.2 | 69 | L242R (CTT→CGT) | lptG | Lipopolysaccharide export system permeaseprotein LptG |
| * | ACB122 | 138,210 | 0 | A | T | 26.9% | 84.6 / 12.1 | 53 | V105E (GTA→GAA) | CJ019_00146 | hypothetical protein |
| * | ACB122 | 4,667,099 | 0 | G | T | 25.4% | 95.4 / 10.3 | 63 | L161L (CTC→CTA) | chrR | Quinone reductase |
| * | ACB122 | 1,348,427 | 0 | C | G | 23.9% | 169.2 / 14.0 | 72 | M1I (ATG→ATC) † | CJ019_01261 | hypothetical protein |
| * | ACB122 | 3,699,098 | 0 | A | T | 23.0% | 153.9 / 13.6 | 74 | *418K (TAA→AAA) | nicP_7 | Porin‑like protein NicP |
| * | ACB122 | 169,705 | 0 | A | C | 21.7% | 29.5 / 11.0 | 23 | intergenic (+669/+3018) | PP_RS08750/fhuA_1 | tRNA‑Val/Ferrichrome outer membrane transporter/phagereceptor |
| * | ACB122 | 6,125,257 | 0 | T | C | 21.6% | 89.6 / 11.5 | 60 | T418A (ACC→GCC) | copA_4 | Copper resistance protein A |
| * | ACB122 | 3,465,434 | 0 | T | G | 21.3% | 150.3 / 12.0 | 89 | H38P (CAC→CCC) | fcuA_1 | Ferrichrome receptor FcuA |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | ACB122 | = 1877650 | 59 (0.830) | 11 (0.150) | 10/260 | 4.5 | 12.4% | intergenic (‑927/‑24) | CJ019_01796/CJ019_01797 | hypothetical protein/hypothetical protein |
| ? | ACB122 | 2492665 = | 97 (1.360) | coding (1491/2436 nt) | iutA | Ferric aerobactin receptor | |||||
| * | ? | ACB122 | = 5981427 | 41 (0.580) | 7 (0.100) | 7/244 | 5.3 | 15.3% | intergenic (+65/‑624) | kefC_3/CJ019_05604 | Glutathione‑regulated potassium‑efflux systemprotein KefC/hypothetical protein |
| ? | ACB122 | 5981619 = | 39 (0.580) | intergenic (+257/‑432) | kefC_3/CJ019_05604 | Glutathione‑regulated potassium‑efflux systemprotein KefC/hypothetical protein | |||||
| * | ? | ACB122 | = 5981413 | 43 (0.600) | 3 (0.040) | 3/244 | 7.3 | 6.8% | intergenic (+51/‑638) | kefC_3/CJ019_05604 | Glutathione‑regulated potassium‑efflux systemprotein KefC/hypothetical protein |
| ? | ACB122 | 5981635 = | 42 (0.630) | intergenic (+273/‑416) | kefC_3/CJ019_05604 | Glutathione‑regulated potassium‑efflux systemprotein KefC/hypothetical protein | |||||