| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | ACB122 | 4933622 | 4982636 | 49015 | 60 [0] | [0] 55 | [CJ019_04628]–[ycaD_3] | [CJ019_04628],aar,CJ019_04630,iscS_3,ddl_2,CJ019_04633,flhB,fliR,fliQ,fliP,CJ019_04638,fliN,fliM,CJ019_04641,CJ019_04642,CJ019_04643,cheB_4,CJ019_04645,fliJ,fliI,CJ019_04648,fliG,fliF,fliE,atoC_3,atoS,norR_4,CJ019_04655,fliS,fliD,CJ019_04658,CJ019_04659,fabH,CJ019_04661,CJ019_04662,CJ019_04663,flgI,flgH,flgG,flgF,CJ019_04668,flgE,flgD,flgC,flgB,cheR2,cheV_3,CJ019_04675,CJ019_04676,CJ019_04677,ycgR,[ycaD_3] |
GGCGATGGATCGCTGACTTCCCACGCATCGATAACACACTTGTAAGTGATGGCGTACCTCTGAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCATGACCTCACATATATTCAGCGATACTGGGCCTGGGTGTATCTATGATTGTAATTTTTGCAGTGAACGCCGCAGCATTGCCGGAAACATCCAGGACATACAAGGCGCCCCACGACGACTCTACAATCAACTCA > ACB122/4933488‑4933754 | ggCGATGGATCGCTTACTTCCCACGCATCGATAACACACTTGTAAGTGATGGCGTAACTCTGAAGCGCGACGAATTAAACTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCTAGGGGCGCa < 7:221151‑M2/135‑2 (MQ=255) tGGATCGCTGACTTCCCACGCATCGATAACACACTTGTAAGTGATGGCGTACCTCTGAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatgggg < 2:103163‑M2/135‑7 (MQ=255) gACTTCCCACGCATCGATAACACACTTGTAAGTGATGGCGTACCTCTGAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgc < 8:55931‑M2/132‑13 (MQ=255) aCTTCCCCCGCATCGATAACACACTTGTAAGTGATGGCGTACCTCTGAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCAGATGATGTTTTCGAGGGGCGCatggggtcatgc < 5:121573‑M2/131‑13 (MQ=255) aCTTCCCACGCATCGAAAACACACTTCTAAGTGATGGCGTACCTCTGAAGAGAGACGAATTACCATCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGTCGCatggggtcatgccga < 8:40257‑M2/134‑16 (MQ=255) gacGCATCGATAACACACTTGTAAGTGAGGGCGTACCTCTGAAGCGCGACGAATTACCCTCAGTGGTCGGGACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataag > 5:269944‑M2/2‑113 (MQ=255) cACGCATCGATAACACACTTGTAAGTGATGGCGTACCTCTGAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataag > 4:26436‑M2/1‑113 (MQ=255) aTAACACACTTGTAAGTGATGGCGTACCTCTGAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGGCACCGCTTCATTTGATGTTTTCGAGGGGCGCatgggggcatgccgagataaggcaaaaatta > 8:267032‑M2/1‑104 (MQ=255) ttGTAAGTGATGGCGTACCTCTGAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcg < 7:56324‑M2/135‑41 (MQ=255) aaGTGATGGCGTACCTCTGAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttct < 3:207666‑M2/135‑45 (MQ=255) gATGGCGTACCTCTGAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggcgtcatgccgagataaggcaaaaattaggacattcgttctctaa < 1:308607‑M2/135‑49 (MQ=255) tGGCGTACCTCTGAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaag > 6:31843‑M2/1‑85 (MQ=255) ggCGTACCTCTGAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaatta > 5:132267‑M2/1‑84 (MQ=255) ggCGTACCTCTGAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaatta < 6:132267‑M2/115‑32 (MQ=255) cGTACCTCTGAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctat < 1:186115‑M2/135‑54 (MQ=255) cGTACCTCTGAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctat < 8:266234‑M2/135‑54 (MQ=255) tctGAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatt > 5:40773‑M2/1‑76 (MQ=255) ctGAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatt < 2:327775‑M2/134‑60 (MQ=255) tgagcgactAATTACCCTCAGTGGTCGGTACATTTGGGGTCACGGATTCATTTGATGTTTTCGAGGGGCGCatggtgtaatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaac > 8:221151‑M2/4‑71 (MQ=255) aGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaac > 6:73534‑M2/1‑71 (MQ=255) cgcgACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacga < 4:148237‑M2/135‑67 (MQ=255) cgaATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGCTGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtattgaaacgagtaga < 1:330922‑M2/135‑72 (MQ=255) cgaATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtaga < 1:12920‑M2/135‑72 (MQ=255) cgaATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtaga < 6:268240‑M2/135‑72 (MQ=255) cgaATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtaga < 7:329647‑M2/135‑72 (MQ=255) cgaATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtaga < 5:194647‑M2/135‑72 (MQ=255) cgaATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtaga < 8:250491‑M2/135‑72 (MQ=255) cgaATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtaga < 8:376010‑M2/135‑72 (MQ=255) cgaATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtaga < 1:43867‑M2/135‑72 (MQ=255) cgaATTACCCTCAGTGGTCGGTACATTTGGGGTCAACGCTTCAGTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattagtacattcgttctctaagcaattgtatttacacgagtag < 8:285638‑M2/134‑71 (MQ=255) cgaATTACCCTCAGTGGTCGGTACATTTGCTGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtaga < 5:109152‑M2/135‑72 (MQ=255) gaATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatgggttcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagat > 2:12920‑M2/1‑63 (MQ=255) aTTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtaga < 6:170922‑M2/132‑72 (MQ=255) tCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccc > 8:116156‑M2/1‑54 (MQ=255) tCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccc > 6:60839‑M2/1‑54 (MQ=255) tCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccc > 3:261641‑M2/1‑54 (MQ=255) gTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccct > 4:109448‑M2/1‑51 (MQ=255) ggTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgc < 2:247716‑M2/133‑85 (MQ=255) ggTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgc < 7:82606‑M2/133‑85 (MQ=255) tCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctca < 5:150906‑M2/134‑88 (MQ=255) aCATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaag < 1:317612‑M2/135‑94 (MQ=255) tGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgc < 1:217641‑M2/135‑99 (MQ=255) tGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctct < 7:248587‑M2/83‑47 (MQ=255) tGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctct > 8:248587‑M2/1‑37 (MQ=255) aCCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgc > 5:77397‑M2/1‑30 (MQ=255) aCCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgc > 6:140616‑M2/1‑30 (MQ=255) aCCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgc < 1:140870‑M2/135‑106 (MQ=255) aCCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgc < 7:364287‑M2/135‑106 (MQ=255) aCCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttcactaagctattgtatttaaacgagtagataagaagccctgctcagcaaagactgcttcgcgc < 3:164953‑M2/135‑106 (MQ=255) aCCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccaagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgc < 1:242133‑M2/135‑106 (MQ=255) gCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgccca < 4:207042‑M2/135‑109 (MQ=255) gCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgag < 2:164472‑M2/43‑17 (MQ=255) gCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgag > 1:164472‑M2/1‑27 (MQ=255) tttGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgcccaatcgct > 7:266234‑M2/1‑21 (MQ=255) aTGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgcccaatcgcttca > 5:279986‑M2/1‑17 (MQ=255) ggggCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgcccaatcgcttcagacatccattg > 3:148237‑M2/1‑7 (MQ=255) gcatggggtcatgccgagataagtcaaatattaggacattcgttctctaagctattgtatttatacgagtagattagaagccctgctcagcaaagactgcttcgcgcccaatcgcttcagccatccattgaggaa > 2:308607‑M2/1‑2 (MQ=255) gcatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgcccaatcgcttcagccatccattgaggaa > 1:327775‑M2/1‑2 (MQ=255) gcatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgcccaatcgcttcagccatccattgaggaa > 1:77136‑M2/1‑2 (MQ=255) gcatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgcccaatcgcttcagccatccattgaggaa > 1:103163‑M2/1‑2 (MQ=255) | GGCGATGGATCGCTGACTTCCCACGCATCGATAACACACTTGTAAGTGATGGCGTACCTCTGAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCATGACCTCACATATATTCAGCGATACTGGGCCTGGGTGTATCTATGATTGTAATTTTTGCAGTGAACGCCGCAGCATTGCCGGAAACATCCAGGACATACAAGGCGCCCCACGACGACTCTACAATCAACTCA > ACB122/4933488‑4933754 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |