Missing coverage evidence... | ||||||||||
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seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | ACB122 | 4933622 | 4982636 | 49015 | 60 [0] | [0] 55 | [CJ019_04628]–[ycaD_3] | [CJ019_04628],aar,CJ019_04630,iscS_3,ddl_2,CJ019_04633,flhB,fliR,fliQ,fliP,CJ019_04638,fliN,fliM,CJ019_04641,CJ019_04642,CJ019_04643,cheB_4,CJ019_04645,fliJ,fliI,CJ019_04648,fliG,fliF,fliE,atoC_3,atoS,norR_4,CJ019_04655,fliS,fliD,CJ019_04658,CJ019_04659,fabH,CJ019_04661,CJ019_04662,CJ019_04663,flgI,flgH,flgG,flgF,CJ019_04668,flgE,flgD,flgC,flgB,cheR2,cheV_3,CJ019_04675,CJ019_04676,CJ019_04677,ycgR,[ycaD_3] |
CACCCGCGGGTCCAGCGCCGCCGACAATGGCGAACCGGCCGCCGGCATCGCCACGTGGCCCAGCGGTGCATCCTGTACCTGATGCAGGCCGGTAACCGCTTTCGGCCGAATGCGCCAGACCAGCACCAGGGCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTTCATCAGAACGCCTGCCGCCAGCGGGCCGACGCATGCACCCACACCGTAGGTCACCAACAGCATCGCCGTCAGCGATACCCGGCGCT > ACB122/4982506‑4982768 | caaaagcatcagcatagacggctagccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccggc > 4:22233‑M2/132‑132 (MQ=255) aaagcatcagcatagacggctagccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccggCAAAg > 6:68076‑M2/130‑134 (MQ=255) aaagcatcagcatagacggctagccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccggCAAAGa > 3:92941‑M2/130‑135 (MQ=255) atcagcatagacggctagccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccggCAAAGAATACg < 5:26433‑M2/11‑1 (MQ=255) atcagcatagacggctagccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccggCAAAGAATACg < 1:160939‑M2/11‑1 (MQ=255) agacggctagccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccggCAAAGAATACGAAGAAGGc < 6:175205‑M2/19‑1 (MQ=255) ccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaccgaatgtcctaatttttgccttatctcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCATc > 6:159041‑M2/107‑135 (MQ=255) ccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaactaatgtcctaatttttgccttttctcggcatatccccggCAAAGAATACGAAGAAGGCATACAGCATc > 4:337794‑M2/107‑135 (MQ=255) ccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCATc > 1:12405‑M2/107‑135 (MQ=255) ccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCATc > 5:202918‑M2/107‑135 (MQ=255) ccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCATc > 4:136776‑M2/107‑135 (MQ=255) ccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCATc > 2:117251‑M2/107‑135 (MQ=255) ccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCATc > 1:5447‑M2/107‑135 (MQ=255) cggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCATCTgcgc < 4:350768‑M2/34‑1 (MQ=255) tgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGc < 6:216285‑M2/41‑1 (MQ=255) agcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACtt > 3:261992‑M2/90‑134 (MQ=255) agccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTtcatc > 3:188662‑M2/86‑135 (MQ=255) agccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTtca > 2:174907‑M2/86‑133 (MQ=255) gaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTTCATCAGAACGCCTgccg > 6:354363‑M2/72‑134 (MQ=255) aatcatatatttacagaacgaatgtcctaattttttccttatctcggcataaccccttCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTTCATCAGAACGCCTGCCGCCAGCGGGCCGAc < 4:90739‑M2/76‑1 (MQ=255) aatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTTCATCAGAACGCCTGCCGCCAGCGGGCCGAc > 6:125299‑M2/59‑134 (MQ=255) aatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTTCATCAGAACGCCTGCCGCCAGCGGGCCGAc > 6:83330‑M2/59‑134 (MQ=255) aatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTTCATCAGAACGCCTGCCGCCAGCGGGCCGAc < 3:33047‑M2/76‑1 (MQ=255) aatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTTCATCAGAACGCCTGCCGCCAGCGGGCCGAc < 4:72478‑M2/76‑1 (MQ=255) aatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTTCATCAGAACGCCTGCCGCCAGCGGGCCGAc < 2:249954‑M2/76‑1 (MQ=255) aatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTTCATCAGAACGCCTGCCGCCAGCGGGCCGAc < 1:26199‑M2/76‑1 (MQ=255) tcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTTCATCAGAACGCCTGCCGCCAGCGGGCCGACGCa < 4:273493‑M2/79‑1 (MQ=255) tatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTTCATCAGAACGCCTGCCGCCAGCGGGCCGACGCATg < 3:22233‑M2/81‑1 (MQ=255) tatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTTCATCAGAACGCCTGCCGCCAGCGGGCCGACGCATGc < 3:77361‑M2/82‑1 (MQ=255) atatttacagaacgaatgtcctaatttttgccttatctcggcataaccccggCAAAGAATACCAAGAAGGCATACAGCATCTGCGCGCCCAGCCCTAACATCAGAACTCATGCCGCCAGCGGGCCGACGCATGCa > 5:82545‑M2/53‑135 (MQ=255) tatttacataacgaatgtcctaatttttgccttatctcggcataacaccggAAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTTCATCAGAAAGCCTGCAGCCAGCGGGACGACGAATGCAc > 1:227218‑M2/52‑135 (MQ=255) tatttacagaacgaatgtcctaatttttgccttatctcggcataaccccggc < 4:267819‑M2/1‑1 (MQ=255) tatttacagaacgaatgtcctaatttttgccttatctcggcataaccccggc > 3:267819‑M2/52‑52 (MQ=255) tatttacagaacgaatgtcctaatttttgccttatctcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTTCATCAGAACGCCTGCCGCCAGCGGGCCGACGCATGCAc > 4:44621‑M2/52‑135 (MQ=255) atttacagaacgaatgtcctaatttttgccttatctcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTTCATCAGACCGCCTGCCGCCAGCGGGCCGCCGCATGCAcc > 6:115115‑M2/51‑135 (MQ=255) atttacagaacgaatgtcctaatttttgccttatctcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTTCATCAGAACGCCTGCCGCCAGCGGGCCGACGCATGCAc < 6:202918‑M2/84‑1 (MQ=255) ttacagaacgaatgtcctaatttttgccttatctcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTTCATCAGAACGCCTGCCGCCAGCGGGCCGACGCATGCACCca < 1:174907‑M2/87‑1 (MQ=255) agaacgaatgtcctaatttttgccttatctcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTTCATCAGAACGCCTGCCGCCAGCGGGCCGACGCATGCACCCacac < 4:188662‑M2/90‑1 (MQ=255) gaatgtcctaatttttgccttatctcggcataaccccggCAAAGAATACg < 2:153315‑M2/11‑1 (MQ=255) gaatgtcctaatttttgccttatctcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTTCATCAGAACGCCTGCCGCCAGCGGGCCGACGCATGCACCCACACCGTAgg > 4:33833‑M2/40‑135 (MQ=255) gaatgtcctaatttttgccttatctcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTTCATCAGAACGCCTGCCGCCAGCGGGCCGACGCATGCACCCACACCGTAgg > 2:67081‑M2/40‑135 (MQ=255) gaatgtcctaatttttgccttatctcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCATCAGCTCGCCCAGCACTTTCATCAGAACGCCTGCCGCCATCGGGCCGACGCATGCACCCACACCGTAg > 6:70113‑M2/40‑134 (MQ=255) gaatgtcctaatttttgccttatctcggcataacccaggCAAAGAATACg > 1:153315‑M2/40‑50 (MQ=255) gtcctaatttttgccttatctcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTTCATCAGAACGCCTGCCGCCAGCGGGCCGACGCATGCACCCACACCGTAGGTCAc < 3:200914‑M2/100‑1 (MQ=255) tgccttatctcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTTCATCAGAACGCCTGCCGCCAGCGGGCCGACGCATGCACCCACACCGTAGGTCACCAACAGCATc < 4:92941‑M2/110‑1 (MQ=255) ccttatctcggcataaccccggCAAAGAATACGACGAAGGCATACAGCATCTGCGCGCCCAGCACATTCATCAGAACGCCTGCCGCCAGCGGGCCGACGCATGCACCCACACCGTAGGTCACCAACAGCATCGc < 8:348226‑M2/112‑1 (MQ=255) ccttatctcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTTCATCAGAACGCCTGCCGCCAGCGGGCCGACGCATGCACCCACACCGTAGGTCACCAACAGCATCGcc > 5:264844‑M2/23‑135 (MQ=255) ccttatctcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTTCATCAGAACGCCTGCCGCCAGCGGGCCGACGCATGCACCCACACCGTAGGTCACCAACAGCATCGc < 1:117251‑M2/112‑1 (MQ=255) ccttatctcggcataaccccgcCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTTCATCAGAACGCCTGCCGCCAGCGGGCCGACGCATGCACCCACACCGTAGGTCACCAACAGCATCGc < 5:381405‑M2/112‑1 (MQ=255) cttatctcggcataaccccggCAAAGCATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTTCATCAGAACGCCTGCCGCCAGCGGGCCGCCGCATGCACCCACACCGTAGGTCACCAACAGCATCGCCg > 5:200210‑M2/22‑135 (MQ=255) cttatctcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTTCATCAGAACGCCTGCCGCCAGCGGGCCGACGCATGCACCCACACCGTAGGTCACCAACAGCATCGCCg > 5:213917‑M2/22‑135 (MQ=255) ctcggcataaccccgtCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTTCATCAGAACGCCTGCCGCCAGCGGGCCGACGCATGCACCCACACCGTAGGTCACCAACAGCATCGCCGTCAg < 7:159557‑M2/118‑1 (MQ=255) cggcataaccccggCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTTCATCAGAACGCCTGCCGCCAGCGGGCCGACGCATGCACCCACACCGTAGGTCACCAACAGCATCGCCGTCAGCg > 7:302633‑M2/15‑134 (MQ=255) taaccccggCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTTCATCAGAACGCCTGCCGCCAGCGGGCCGACGCATGCACCCACACCGTAGGTCACCAACAGCATCGCCGTCAGCGATAccc > 6:171317‑M2/10‑135 (MQ=255) cggCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTTCATCAGAACGCCTGCCGCCAGCGGGCCGACGCATGCACCCACACCGTAGGTCACCAACAGCATCGCCGTCAGCGATACCCGGCGCt > 6:300839‑M2/4‑135 (MQ=255) | CACCCGCGGGTCCAGCGCCGCCGACAATGGCGAACCGGCCGCCGGCATCGCCACGTGGCCCAGCGGTGCATCCTGTACCTGATGCAGGCCGGTAACCGCTTTCGGCCGAATGCGCCAGACCAGCACCAGGGCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTTCATCAGAACGCCTGCCGCCAGCGGGCCGACGCATGCACCCACACCGTAGGTCACCAACAGCATCGCCGTCAGCGATACCCGGCGCT > ACB122/4982506‑4982768 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |