| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | ACB122 | 4933622 | 4982636 | 49015 | 76 [0] | [0] 54 | [CJ019_04628]–[ycaD_3] | [CJ019_04628],aar,CJ019_04630,iscS_3,ddl_2,CJ019_04633,flhB,fliR,fliQ,fliP,CJ019_04638,fliN,fliM,CJ019_04641,CJ019_04642,CJ019_04643,cheB_4,CJ019_04645,fliJ,fliI,CJ019_04648,fliG,fliF,fliE,atoC_3,atoS,norR_4,CJ019_04655,fliS,fliD,CJ019_04658,CJ019_04659,fabH,CJ019_04661,CJ019_04662,CJ019_04663,flgI,flgH,flgG,flgF,CJ019_04668,flgE,flgD,flgC,flgB,cheR2,cheV_3,CJ019_04675,CJ019_04676,CJ019_04677,ycgR,[ycaD_3] |
CGATGGATCGCTGACTTCCCACGCATCGATAACACACTTGTAAGTGATGGCGTACCTCTGAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCATGACCTCACATATATTCAGCGATACTGGGCCTGGGTGTATCTATGATTGTAATTTTTGCAGTGAACGCCGCAGCATTGCCGGAAACATCCAGGACATACAAGGCGCCCCACGACGACTCTACAATCAACTCAAC > ACB122/4933490‑4933756 | cGATGGATCGCTGACTTCCCACGCATCGATAACACACTTGTAAGTGATGGCGTACCTCTGAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatgg > 5:138782‑M2/1‑132 (MQ=255)cGATGGATCGCTGACTTCCCACGCATCGATAACACACTTGTAAGTGATGGCGTACCTCTGAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatgg > 6:234488‑M2/1‑132 (MQ=255) aTCGCTGACTTCCCACGCATCGATAACACACTTGTAAGTGATGGCGTACCTCTGAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcat < 8:197180‑M2/136‑11 (MQ=255) aTCGCTGACTTCCCACGCATCGATAACACACTTGTAAGTGATGGCGTACCTCTGAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcat < 5:237998‑M2/136‑11 (MQ=255) aCTTCCCACGCATCGATAACACACTTGTAAGTGATGGCGTACCTCTGAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgcc < 7:94890‑M2/132‑14 (MQ=255) ccACGCATCGATAACACACTTGTAAGTGATGGCGTACCTCTGAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataag > 4:151257‑M2/1‑114 (MQ=255) cATCGATAACACACTTGTAAGTGATGGCGTACCTCTGAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaa > 1:106889‑M2/1‑109 (MQ=255) cccacttGTAAGTGATGGCGTACCTCTGAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggaca > 3:198245‑M2/3‑100 (MQ=255) acacTTGTAAGTGATGGCGTACCTCTGAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacat > 6:237998‑M2/1‑99 (MQ=255) aaacttGTTAGTGATGGCGTACCTGTGACGCGCGAAGAATTAGCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCTAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacat > 6:301450‑M2/3‑99 (MQ=255) acTTGTAAGTGATGGCGTACCTCTGAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattc < 4:326602‑M2/136‑40 (MQ=255) ttGTAAGTGATGGCGTACCTCTGAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgt < 6:148067‑M2/136‑42 (MQ=255) tAAGTGATGGCGTACCTCTGAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttct < 6:164466‑M2/136‑45 (MQ=255) tAAGTGATGGCGTACCTCTGAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttct < 5:295602‑M2/136‑45 (MQ=255) agagATGGCGTACCTCTGAAGCTCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctct > 4:34970‑M2/1‑90 (MQ=255) aGTGATGGCGTACCTCTGAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctct > 6:254588‑M2/1‑90 (MQ=255) tGGCGTACCTCTGAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagct > 4:197994‑M2/1‑85 (MQ=255) ggCGTACCTCTGAATCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCTAGTGGCGCatggggtcattccgagataaggcaaacattaggacattcgttctctaagat < 1:291484‑M2/135‑52 (MQ=255) cGTACCTCTGAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctatt < 3:47928‑M2/136‑55 (MQ=255) cGTACCTCTGAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctagt < 5:225738‑M2/136‑55 (MQ=255) cGTACCTCTGAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagatat < 2:292577‑M2/135‑54 (MQ=255) cGTACCTCTGAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacat < 5:190518‑M2/119‑38 (MQ=255) cGTACCTCTGAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacat > 8:126402‑M2/1‑82 (MQ=255) cGTACCTCTGAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacat < 7:126402‑M2/119‑38 (MQ=255) cGTACCTCTGAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacat > 6:190518‑M2/1‑82 (MQ=255) cGTACCTCTGAAGCGCGACGAATAACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCTCattgggtcatgccgagataaggcaaaaattaggacattcgttctctaagctatt < 5:2486‑M2/136‑55 (MQ=255) ctctGAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatt < 4:223619‑M2/136‑60 (MQ=255) aaGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaac > 5:288963‑M2/1‑72 (MQ=255) aGCGCGACGAATTACCCTCAGTGGTCGGTACATTTTGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaa < 6:210109‑M2/133‑63 (MQ=255) aGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacg > 8:286707‑M2/1‑71 (MQ=255) cgcgACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgag > 4:127591‑M2/1‑69 (MQ=255) cgaATTTCCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagat > 5:24197‑M2/1‑64 (MQ=255) cgaATTACCCTCAGTGGTCGGTACATTTGGGTTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatgggggcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagat > 6:130465‑M2/1‑64 (MQ=255) cgaATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCTCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagat < 4:88760‑M2/136‑73 (MQ=255) cgaATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagat > 7:197180‑M2/1‑64 (MQ=255) cgaATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtaga < 2:291947‑M2/135‑72 (MQ=255) cgaATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtaga < 2:7434‑M2/135‑72 (MQ=255) cgaATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCAGTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaaataggacattcgttctctaagctattgtatttaaacgagtagat < 8:70034‑M2/136‑73 (MQ=255) aCCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaa > 4:303646‑M2/1‑58 (MQ=255) cccTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctaatgtatttaaacgagtagattagaa > 2:300618‑M2/1‑57 (MQ=255) cTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccc > 4:169362‑M2/1‑55 (MQ=255) tCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccct < 5:317414‑M2/136‑83 (MQ=255) ggTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctc > 1:222056‑M2/1‑49 (MQ=255) ggTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctc < 2:245114‑M2/135‑87 (MQ=255) ggTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgc < 1:329860‑M2/133‑85 (MQ=255) gTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcag > 5:134346‑M2/1‑48 (MQ=255) gTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaa < 2:161294‑M2/135‑92 (MQ=255) gTACATTTGGGGTCACCGCTTCATTTGATGGTTTCGAGGGGCGAatggggtcatgccgagataaggcataaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaa > 8:65838‑M2/1‑44 (MQ=255) gggTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgct > 1:161294‑M2/1‑35 (MQ=255) gggTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaa > 7:52183‑M2/1‑35 (MQ=255) gggTCACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaa < 8:52183‑M2/61‑27 (MQ=255) cACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgcctagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgc < 5:65212‑M2/136‑106 (MQ=255) cACCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgc > 3:187289‑M2/1‑31 (MQ=255) aCCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaatcgagtagattagatgccctcctcagcaaagactgcttcgcgcc < 4:282181‑M2/136‑107 (MQ=255) aCCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgctc < 1:172419‑M2/135‑106 (MQ=255) aCCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgcc < 7:269655‑M2/136‑107 (MQ=255) aCCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgcc < 7:275911‑M2/136‑107 (MQ=255) aCCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgc < 1:198061‑M2/135‑106 (MQ=255) aCCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccc < 1:39455‑M2/111‑82 (MQ=255) aCCGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccc > 2:39455‑M2/1‑30 (MQ=255) ccGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgccc > 6:2486‑M2/1‑29 (MQ=255) cGCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgccca > 4:84545‑M2/1‑28 (MQ=255) gCTTCATTTGATGTTTTCGAGGGGCGCatgtggtcatgccgagataaggcaaaaattaggacattcgttctctaag > 4:50922‑M2/1‑27 (MQ=255) gCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgcccaa < 5:129816‑M2/136‑110 (MQ=255) gCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgccca < 1:163815‑M2/135‑109 (MQ=255) gCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgc < 1:151950‑M2/132‑106 (MQ=255) gCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgc > 2:151950‑M2/1‑27 (MQ=255) gCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgaccaa < 6:129495‑M2/136‑110 (MQ=255) gCTTCATTTGATGTTTTCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaag < 3:50922‑M2/76‑50 (MQ=255) gTTTTCGAGGGGCCCatggggtcatgccgagataaggcaaaaattatgacattagttctctaagctattgtatttaaacgagtagattagaacccctgctcagcaaagactgcttcgcgcccaatcgcttcctcc < 6:95292‑M2/135‑121 (MQ=255) ttttCGAGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgcccaatcgcttcagccat > 5:148067‑M2/1‑14 (MQ=255) aGGGGCGCatggtgtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgcccaatcgcttcagccatccattg > 5:160445‑M2/1‑8 (MQ=255) aGGGGCGCatggggtcatgccgagataaggcaaaaattaggacattagttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgcccaatcgcttcagccatccattg > 6:32529‑M2/1‑8 (MQ=255) cgcatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgcccaatcgcttcagccatccattgaggaa > 5:143679‑M2/1‑3 (MQ=255) cgcatggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgcccaatcgcttcagccatccattgagg < 7:308866‑M2/134‑132 (MQ=255) catggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgcccaatcgcttcagccatccattgaggaagg < 6:116379‑M2/136‑136 (MQ=255) | CGATGGATCGCTGACTTCCCACGCATCGATAACACACTTGTAAGTGATGGCGTACCTCTGAAGCGCGACGAATTACCCTCAGTGGTCGGTACATTTGGGGTCACCGCTTCATTTGATGTTTTCGAGGGGCGCATGACCTCACATATATTCAGCGATACTGGGCCTGGGTGTATCTATGATTGTAATTTTTGCAGTGAACGCCGCAGCATTGCCGGAAACATCCAGGACATACAAGGCGCCCCACGACGACTCTACAATCAACTCAAC > ACB122/4933490‑4933756 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |