| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | ACB122 | 4933622 | 4982636 | 49015 | 76 [0] | [0] 54 | [CJ019_04628]–[ycaD_3] | [CJ019_04628],aar,CJ019_04630,iscS_3,ddl_2,CJ019_04633,flhB,fliR,fliQ,fliP,CJ019_04638,fliN,fliM,CJ019_04641,CJ019_04642,CJ019_04643,cheB_4,CJ019_04645,fliJ,fliI,CJ019_04648,fliG,fliF,fliE,atoC_3,atoS,norR_4,CJ019_04655,fliS,fliD,CJ019_04658,CJ019_04659,fabH,CJ019_04661,CJ019_04662,CJ019_04663,flgI,flgH,flgG,flgF,CJ019_04668,flgE,flgD,flgC,flgB,cheR2,cheV_3,CJ019_04675,CJ019_04676,CJ019_04677,ycgR,[ycaD_3] |
TCCACCCGCGGGTCCAGCGCCGCCGACAATGGCGAACCGGCCGCCGGCATCGCCACGTGGCCCAGCGGTGCATCCTGTACCTGATGCAGGCCGGTAACCGCTTTCGGCCGAATGCGCCAGACCAGCACCAGGGCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTTCATCAGAACGCCTGCCGCCAGCGGGCCGACGCATGCACCCACACCGTAGGTCACCAACAGCATCGCCGTCAGCGATACCCGGCGCTCGCT > ACB122/4982504‑4982772 | ggcaaaagcatcagcatagacggctagccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccggCa > 5:314701‑M2/134‑135 (MQ=255) catcagcatagacggctagccagacggtggatgtccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccggCAAAGAATACg < 3:251609‑M2/11‑1 (MQ=255) catcagcatagacggctagccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccggCAAAGAATACg < 4:233805‑M2/11‑1 (MQ=255) catcagcatagacggctagccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccggCAAAGAATACg < 7:166775‑M2/11‑1 (MQ=255) gcatagacggctagccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccggCAAAGAATACgaag > 5:195209‑M2/121‑134 (MQ=255) tagacggctaggaagacggtggatgagcagctagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccggCATAGAATACGAAGAAGGc < 3:227985‑M2/19‑1 (MQ=255) tagacggctagccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccggCAAAGAATACGAAGAAGGc < 6:195209‑M2/19‑1 (MQ=255) gccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCAt > 4:322713‑M2/108‑135 (MQ=255) gccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCAt > 2:218856‑M2/108‑135 (MQ=255) ccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccggCAAAGAATACg > 5:321632‑M2/107‑117 (MQ=255) ccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccggCAAAGAATACg < 6:321632‑M2/11‑1 (MQ=255) ccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCATc > 2:130174‑M2/107‑135 (MQ=255) ccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCATc < 2:21441‑M2/29‑1 (MQ=255) tgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGc < 1:102606‑M2/41‑1 (MQ=255) gaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCAc > 6:138868‑M2/94‑136 (MQ=255) gaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCAc > 4:250254‑M2/94‑136 (MQ=255) agccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTtcat > 6:303141‑M2/86‑134 (MQ=255) cacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTTCATCAGaa < 5:138868‑M2/54‑1 (MQ=255) ggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaattttagccgtaactcggcagaagcccggCACAGAATCCGAAGAACGCATACAGCATCAGCGCGCCCAGCACGATCATCCGAACGc > 4:154309‑M2/80‑136 (MQ=255) gaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTTCATCAGAACGCCTgccgc > 4:212460‑M2/72‑135 (MQ=255) gaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTTCATCAGAACGCCTgccg < 3:295315‑M2/63‑1 (MQ=255) gaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTTCATCAGAACGCCTgccg > 2:310189‑M2/72‑134 (MQ=255) aataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTTCATCAGAACGCCTgccgc > 6:150894‑M2/71‑134 (MQ=255) taaatcatatatttacagaacgaatgtcctaatttttgccttatatcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCATCTCCGCGCCCAGCACTTTCATCAGAACGCCTGCCGCCAGCGGGCcgc > 2:340876‑M2/61‑134 (MQ=255) aaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTTCATCAGAACGCCTGCCGCCAGCGGGCCGAc < 7:225262‑M2/76‑1 (MQ=255) aatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTTCATCAGAACGCCTGCCGCCAGCGGGCCGACg > 3:306737‑M2/59‑135 (MQ=255) atatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCACCACTTTCATCAGAACGCCTGCCGCCAGCGGGCCGACGCATGc < 3:183348‑M2/82‑1 (MQ=255) tatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTTCATCAGAACGCCTGCCGCCAGCGGGCCGACGCATGc < 1:310189‑M2/82‑1 (MQ=255) atttacagaacgaatgtcctaatttttgccttatctcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTTCATCAGAACGCCTGCCGCCAGCGTGCCGACGCATGCAcc > 3:68741‑M2/51‑135 (MQ=255) cagaacgaatgtcctaatttttgccttatctcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTTCATCAGAACGCCTGCCGCCAGCGGGCCGACGCATGCACCCacac < 5:15386‑M2/90‑1 (MQ=255) agaacgaatgtcctaatttttgccttatctcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTTCATCAGAACGCCTGCCGCCAGCGGGCCGACGCATGCACCCACACCg < 3:161893‑M2/92‑1 (MQ=255) acgaatgtcctaatttttgccttatctcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTTCATCAGAACGCCTGCCGCCAGCGGGCCGACGCATGCACCCACACCGTAg > 4:45555‑M2/42‑136 (MQ=255) cgaatgtcctaatttttgccttatctcggcataaccacggCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTTCATCAGAACGCCTTCCGCCAGCGGGCCGACGCATGCACCCACACCGTAgg > 7:248281‑M2/41‑136 (MQ=255) gaatgtcctaatttttgccttatctcggcataaccccggCAAAGAATACGaagaag > 2:122980‑M2/40‑56 (MQ=255) gaatgtcctaatttttgccttatctcggcataaccccggCAAAGAATACGaagaag < 1:122980‑M2/17‑1 (MQ=255) gaatgtcctaatttttgccttatctcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTTCATCAGAACGCCTGCCGCCAGCGGGCCGAc < 6:109772‑M2/76‑1 (MQ=255) gaatgtcctaatttttgccttatctcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTTCATCAGAACGCCTGCCGCCAGCGGGCCGAc > 5:109772‑M2/40‑115 (MQ=255) gaatgtcctaatttttgccttatctcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTTCATCAGAACGCCTGCCGCCAGCGGGCCGACGCATGCACCCACACCGTAgg < 1:137259‑M2/96‑1 (MQ=255) tgtcctaatttttgccttatctcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTTCATCAGAACGCCTGCCGCCAGCGGGCCGACGCATGCACCCACACCGTAGGTCAc < 6:235875‑M2/100‑1 (MQ=255) tgtcctaatttttgccttatctcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTTCATCAGAACGCCTGCCGCCAGCGGGCCGACGCATGCACCCACACCGTAGGTCAc < 6:970‑M2/100‑1 (MQ=255) taatttttgccttatctcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTTCATCAGAACGCCTGCCGCCAGCGGGCCGACGCATGCACCCACACCGTAGGTCACCaa > 4:17309‑M2/32‑134 (MQ=255) tttttgccttatctcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTTCATCAGAACGCCTGCCGCCAGCGGGCCGACGCATGCACCCACACCGTAGGTCACCAACAGCa < 8:36531‑M2/108‑1 (MQ=255) gccttatctcggcataaccccgtCAAAGAATACGAAGAAGGCATACATCATCTGCGCGCCCAGCACTTTCATCAGAACGCCTGCCGCCAGCGGGCCGACGCATGCACCCACACCGTAGGTCAACAACAGCATCGc < 3:198148‑M2/112‑1 (MQ=255) gccttatctcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTTCATCAGAACGCCAGCCGCCAGCGGGCCGACGCATGCACCCACACCGTAGGTCACCAACAGCATCGc < 3:322713‑M2/112‑1 (MQ=255) ccttatctcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTTCATCAGAACGCCTGCCGCCAGCGGGCCGACGCATGCACCCACACCGTAGGTCACCAACAGCATCGc < 1:218856‑M2/112‑1 (MQ=255) ccttatctcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTTCATCAGAACGCCTGCCGCCAGCGGGCCGACGCATGCACCCACACCGTAGGTCACCAACAGCATCGCCg > 3:130010‑M2/23‑136 (MQ=255) ccttatctcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTTCATCAGAACGCCTGCCGCCAGCGGGCCGACGCATGCACCCACACCGTAGGTCACCAACAGCATCGCCg > 6:78931‑M2/23‑136 (MQ=255) tcggcataaccccggCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTTCATCAGAACGCCTGCCGCCAGCGGGCCGCCGCATGCACCCACACCGTAGGTCACCAACAGCATCGCCGTCAGcgc > 3:46396‑M2/16‑135 (MQ=255) accccggCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTTCATCAGAACGCCTGCCGCCAGCGGGCCGACGCATGCACCCACACCGTAGGTCACCAACAGCATCGCCGTCAGCGATACCCGgc < 3:267597‑M2/129‑1 (MQ=255) ccccggCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTTCATCAGAACGCCTGCCGCCAGCGGGCCGACGCATGCACCCACACCGTAGGTCACCAACAGCATCGCCGTCAGCGATACCCGgc < 1:130174‑M2/129‑1 (MQ=255) cggCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTTCATCAGAACGCCTGCCGCCAGCGGGCCGCCGCATGCACCCACACCGTAGGTCCCCAACAGCATCGCCGTCAGCGATACCCGGcgct > 1:64610‑M2/4‑135 (MQ=255) cggCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTTCATCAGAACGCCTGCCGCCAGCGGGCCGACGCATGCACCCACACCGTAGGTCACCAACAGCATCGCCGTCAGCGATACCCGGcgctc > 4:333909‑M2/4‑136 (MQ=255) cAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTTCATCAGCACGCCTGCCGCCAGCGGGCCGACGCATGCACCCACACCGTAGGTCACCAACAGCATCGCAGTCAGCGATACCCGGcgctcgct > 6:170675/1‑136 (MQ=255) cAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTTCATCAGAACGCCTGCCGCCAGCGGGCCGACGCATGCACCCACACCGTAGGTCACCAACAGCATCGCCGTCAGCGATACCCGGcgctcgc > 2:71579/1‑135 (MQ=255) | TCCACCCGCGGGTCCAGCGCCGCCGACAATGGCGAACCGGCCGCCGGCATCGCCACGTGGCCCAGCGGTGCATCCTGTACCTGATGCAGGCCGGTAACCGCTTTCGGCCGAATGCGCCAGACCAGCACCAGGGCAAAGAATACGAAGAAGGCATACAGCATCTGCGCGCCCAGCACTTTCATCAGAACGCCTGCCGCCAGCGGGCCGACGCATGCACCCACACCGTAGGTCACCAACAGCATCGCCGTCAGCGATACCCGGCGCTCGCT > ACB122/4982504‑4982772 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |