New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	ACB122	= 5981427	41 (0.620)	6 (0.100)	6/218	NT	16.9%	intergenic (+65/‑624)	kefC_3/CJ019_05604	Glutathione‑regulated potassium‑efflux systemprotein KefC/hypothetical protein
	?	ACB122	5981619 =	21 (0.340)					intergenic (+257/‑432)	kefC_3/CJ019_05604	Glutathione‑regulated potassium‑efflux systemprotein KefC/hypothetical protein

CAAGGTGATGCAGACGGCCAAGGAGGCGCGGGTGGAGCTGGAGCGGTTGTTTGATTCGGATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAG  >  ACB122/5981293‑5981557                                                                                                                                       |                                                                                                                                   cAAGGTGATGCAGACGGCCAAGGAGGCGCGGGTGGAGCTGGAGCGGTTGTTTGATTCGGATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCT                                                                                                                                    >  6:368498‑M1/1‑135 (MQ=255) cAAGGTGATGCAGACGGCCAAGGAGGCGCGGGTGGAGCTGGAGCGGTGGTTTGATGCGGATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCT                                                                                                                                    <  7:250410‑M1/135‑1 (MQ=255) cAAGGGGATGCCGACGGCCAAGGAGGCGCGGGTGGAGCTGGAGCGGTTGTTTGATTCGGATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCT                                                                                                                                    <  2:16477‑M1/135‑1 (MQ=255)           cAGACGGCCAAGGAGGCGCGGGTGGAGCTGGAGCGGTTGTTTGATTCGGATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTATTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTcgatctcatg                                                                                                                          >  7:120443‑M1/1‑125 (MQ=255)            aGACGGCCAAGGAGGCGCGGGTGGAGCTGGAGCGGTGGGTTGATTAGGATGCGGCCGGGGGCCTTTTGGCGCGTGCCTTTCGGGTTGTAGTTCCTGTGAGCTTGGGCGCCGCCCGCGCGGCGCTcgctcgcatgg                                                                                                                         >  1:174556‑M1/1‑124 (MQ=255)                 gCCACGGTGGCGGGGGTGGAGCGGGTGCGGTTGTTTTATTCGGAGGCGGACTGCGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGc                                                                                                                    <  2:323903/135‑1 (MQ=37)                 gCCACGGAGGCGCGGGTGGAGCGGGCGCGGTTGTTTGATTCGGATGCGGACTGAGGCCTTTTGGCGCGGGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGc                                                                                                                    <  2:376947/135‑1 (MQ=255)                 ccccaggaggCGCGGGGGGAGCTGGAGCGGGTGTTGGATTCGGATGCGGACTGCGGCCTTTTGGCGCGTGCCTGGAGGGTTGTCGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGc                                                                                                                    <  4:460547/131‑1 (MQ=37)                        aggCGCGGGTGGAGCTGGAGCGGTTGTTTGATTCGGATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACg                                                                                                             >  4:67021/1‑135 (MQ=255)                            gcgGGTGGAGCTGGAGCGGTTGTTTGATTCTGATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTcgatctcatgggcgcccaaaaactatc                                                                                                         <  8:120443‑M1/135‑28 (MQ=255)                             cgGGTGGAGCTGGAGCGGTTGTTTGATTCGGATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTGCAACgtttag                                                                                                        >  7:354814/1‑133 (MQ=255)                             cgGGTGGAGCTGGAGCGGTTGTTTGATTCGGATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTTCgtttgt                                                                                                        >  7:335550/1‑135 (MQ=255)                               ggTGTAGCTGGAGGGGTTGTTTGATTCTGATGCGTACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCGGCGCGGCGCTTCGCGGTTAAACCCGCTCCTACgtttgttt                                                                                                      <  8:354814/135‑1 (MQ=37)                               ggTGGAGCTGGAGCGGTTGTTTGATTCGGATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTcgatctcatgggcgcccaaaaactatcg                                                                                                        >  7:302976‑M1/1‑105 (MQ=255)                               ggTGGAGCTGGAGCGGTTGTTTGATTCGGATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACgtttgttt                                                                                                      >  1:105082/1‑135 (MQ=255)                                gTGGAGCTGGAGCGGTTGTTTGATTCGGATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTc                                                                                                     <  5:368498/135‑1 (MQ=255)                                gTGGAGCTGGAGCGGTTGTTTGATTCGGATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTc                                                                                                     <  5:205181/135‑1 (MQ=255)                                gTGGAGCTGGAGCGGTTGTTGGATGCGGATGCGGCCTGAGGCCTTTTGGCGCGGGCCTTGAGGGTTGTCGTGCCTGTGAGATGGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTc                                                                                                     <  1:120145/135‑1 (MQ=25)                                     gctggagcGGTTGTTTGATTCGGATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGcc                                                                                                <  4:98201/135‑1 (MQ=255)                                     gctggagcGGTTGTTTGATTCGGATGCGGACTGAGGCCTTTTGGCGAGGGCCTTGAGGGTTGTAGGGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGTGTAAACCCGCTCCTACGTTTGTTTCGGGcc                                                                                                <  8:362634/135‑1 (MQ=255)                                     gcgggagcGGTTGTTTGATTCGGATGCGGACTGAGGCCTTTTGGCGCGGGCCTTGAGGGTTGTAGTGCCTGGGAGATTGGCCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGcc                                                                                                <  6:321989/132‑1 (MQ=255)                                       tggagcGGTTGTTTGATTCGGATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAg                                                                                              <  2:105082/135‑1 (MQ=255)                                             ggTTGTTTGATTCGGATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCT                                                                                                                                    >  4:408189‑M1/1‑91 (MQ=255)                                             ggTTGTTTGATTCGGATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCT                                                                                                                                    <  3:408189‑M1/91‑1 (MQ=255)                                                           gctgcGGACTGCGGCCTTTGGGGGCGTGCCTGGAGGGGTGCAGGGCCTGTGACAGGGGGCGCCGCGCGCGCGGCGCTcgatctcatgggcgcccaaaaactatcgccaggcacctggaagccatcctgcaattt                                                                           <  3:342305‑M1/132‑58 (MQ=255)                                                           gATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCa                                                                          <  6:160917/135‑1 (MQ=255)                                                             tGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCAcg                                                                        <  8:334925/135‑1 (MQ=255)                                                              gCGGACTGCGGCCTTTTGGCGCGTGCCTGGCGGGTTGTCGTGCCGGTGAGCTGGGGCGCCGCCCGCGCGGCGCGTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCAcgc                                                                       <  1:23572/135‑1 (MQ=21)                                                              gCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGACATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCAcgc                                                                       <  1:257796/135‑1 (MQ=255)                                                                        gCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGGTCCTTCGGTTGTTTGGGGCCAGTTATTCCTGTGGGTCGCGCACGCGAGCCCCCTg                                                             >  7:228069/1‑135 (MQ=37)                                                                        gCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTg                                                             <  3:67021/135‑1 (MQ=255)                                                                        gCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTATCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTg                                                             <  5:295190/135‑1 (MQ=255)                                                                          cTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGGGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGgc                                                           <  3:365019/135‑1 (MQ=255)                                                                          cTTTTGGCGCGGGCGTTGTGGGTTGATGTGCCTGTTAGATTGGGGGCCGCCGGGGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGgc                                                           <  5:424324/135‑1 (MQ=21)                                                                               ggCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTAGCGGGGTAACCCGCGGCTACGGTTGTTTGGGGGCCGGTATTCCTGTGGGGCGCGCCCGCGAGCCCCCGGGCGCCCg                                                      >  4:365019/1‑135 (MQ=25)                                                                                        cTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTAGCGGGTAAACCCGCGCCTAAGGTTGTTTAGGGCCAGTTATTACATTGGGGCGCGCACGCGAGCCCCCAGGCGCCCGCCGCGatat                                             >  3:82314/1‑135 (MQ=21)                                                                                         ttGAGGGTTGTAGTGCCTGGGAGATGGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTAATCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATc                                            <  8:23186/135‑1 (MQ=255)                                                                                         tggAGGGTTGTCGTGCGTGTGAGTTTGGGGGCGGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATc                                            <  1:337772/133‑1 (MQ=25)                                                                                              ggtggtAGTGGCTGTGAGATTGGGCGCCGCCCGCGCGGCGATTCGCGGGGAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCGCCTGGAGCACGCCTCGATATCGcgtc                                       <  8:344072/135‑1 (MQ=21)                                                                                               gTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTAGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGcgtc                                       >  3:346314/1‑134 (MQ=255)                                                                                                         cTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAg                                                                                              <  5:414555/69‑1 (MQ=255)                                                                                                         cTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAg                                                                                              >  6:414555/1‑69 (MQ=255)                                                                                                                     gcgcCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTcgcgcgc                <  2:337795/135‑1 (MQ=255)                                                                                                                     gcgcCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTcgcgcgc                <  8:228069/135‑1 (MQ=255)                                                                                                                     gcgcCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTcgcgcgc                <  1:365409/135‑1 (MQ=255)                                                                                                                     gcgcCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTcgcgcgc                <  4:346314/135‑1 (MQ=255)                                                                                                                     gcgcCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTcgcgcgc                <  3:149550/135‑1 (MQ=255)                                                                                                                     gcgcCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTcgcgcgc                <  4:45996/135‑1 (MQ=255)                                                                                                                       gccgccCGCGCGGCGCTcgatctcatgggcgcccaaaaactatcgccaggcacctggaagccatcctgcaagttcctgacgatcacctcgccgccatgacgcgaactcacaaaaaccatcacaaatcgtctaatt              >  4:392554‑M1/1‑17 (MQ=255)                                                                                                                          gcccgcGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTg           <  4:82314/135‑1 (MQ=255)                                                                                                                          gcccgcGCGGCGCGTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTg           <  4:432649/135‑1 (MQ=255)                                                                                                                           cccgcGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTGTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTgg          <  6:161315/135‑1 (MQ=255)                                                                                                                                   gcgcTcgatctcatgggcgcccaaaactatcgcccggcacctggaagccatcctgcaatttcctgacgatcaccacgccgccatgacgcgaactcacaaaaaccatcacaaatcgtcgaattctcagcagggtc   >  8:409262‑M1/1‑5 (MQ=255)                                                                                                                                    cgcTcgatctcatgggcgcccaaaaactatcgccaggcacctggaagccatcctgcaatttcctgacgatcacctcgccgccatgacgcgaactcacaaaaaccatcacaaatcgtctaattctcagctgggtc  >  2:260983‑M1/1‑4 (MQ=255)                                                                                                                                       |                                                                                                                                   CAAGGTGATGCAGACGGCCAAGGAGGCGCGGGTGGAGCTGGAGCGGTTGTTTGATTCGGATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAG  >  ACB122/5981293‑5981557

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.