mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 39 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | ACB122 | 5,165,184 | 0 | T | G | 56.2% | 3.0 / 14.2 | 20 | intergenic (+137/+46) | puuB_6/fadD_1 | Gamma‑glutamylputrescine oxidoreductase/Long‑chain‑fatty‑acid‑‑CoA ligase |
| * | ACB122 | 3,491,337 | 0 | G | C | 56.0% | 20.4 / 34.4 | 25 | intergenic (‑699/+22) | CJ019_03306/CJ019_03307 | hypothetical protein/hypothetical protein |
| * | ACB122 | 5,688,637 | 0 | A | C | 54.8% | 2.1 / 16.9 | 31 | S236R (AGC→CGC) | pyrC' | Dihydroorotase‑like protein |
| * | ACB122 | 3,440,348 | 0 | T | G | 54.2% | 1.4 / 12.6 | 28 | A19A (GCT→GCG) | CJ019_03266 | hypothetical protein |
| * | ACB122 | 5,974,062 | 0 | T | G | 54.2% | 19.0 / 29.8 | 38 | L684R (CTG→CGG) | sasA_19 | Adaptive‑response sensory‑kinase SasA |
| * | ACB122 | 3,440,363 | 0 | A | C | 53.8% | 6.5 / 21.6 | 27 | A24A (GCA→GCC) | CJ019_03266 | hypothetical protein |
| * | ACB122 | 2,856,865 | 0 | T | G | 52.9% | 5.2 / 14.1 | 17 | W290G (TGG→GGG) | hdfR_4 | HTH‑type transcriptional regulator HdfR |
| * | ACB122 | 2,856,872 | 0 | T | G | 52.9% | 7.4 / 14.8 | 17 | L292W (TTG→TGG) | hdfR_4 | HTH‑type transcriptional regulator HdfR |
| * | ACB122 | 3,626,079 | 0 | A | C | 52.2% | 9.8 / 22.1 | 23 | N165T (AAC→ACC) | hcf136_3 | Ycf48‑like protein |
| * | ACB122 | 3,229,202 | 0 | A | C | 52.0% | 1.1 / 11.9 | 25 | T414P (ACC→CCC) | garD_1 | Galactarate dehydratase (L‑threo‑forming) |
| * | ACB122 | 5,688,645 | 0 | T | G | 51.4% | 10.8 / 24.1 | 35 | R238R (CGT→CGG) | pyrC' | Dihydroorotase‑like protein |
| * | ACB122 | 4,385,002 | 0 | G | C | 50.0% | 1.5 / 10.0 | 18 | intergenic (‑374/+96) | CJ019_00698/CJ019_04138 | hypothetical protein/hypothetical protein |
| * | ACB122 | 5,684,634 | 0 | A | C | 47.2% | 28.6 / 11.5 | 36 | P118P (CCA→CCC) | CJ019_05336 | hypothetical protein |
| * | ACB122 | 2,780,706 | 0 | A | T | 46.4% | 2.5 / 14.6 | 28 | intergenic (+96/‑29) | ahpC_2/ahpF | Alkyl hydroperoxide reductase C/Alkyl hydroperoxide reductase subunit F |
| * | ACB122 | 1,157,983 | 0 | A | C | 44.9% | 33.9 / 11.5 | 49 | S162A (TCG→GCG) | hexR_1 | HTH‑type transcriptional regulator HexR |
| * | ACB122 | 2,679,357 | 0 | T | G | 43.2% | 47.0 / 14.8 | 45 | E474D (GAA→GAC) | rcsC_4 | Sensor histidine kinase RcsC |
| * | ACB122 | 411,339 | 0 | C | A | 37.0% | 56.9 / 10.1 | 47 | F24L (TTC→TTA) | kdkA_1 | 3‑deoxy‑D‑manno‑octulosonic acid kinase |
| * | ACB122 | 5,525,883 | 0 | A | C | 36.7% | 62.6 / 10.3 | 49 | intergenic (‑53/+102) | livH_5/braC_2 | High‑affinity branched‑chain amino acidtransport system permease protein LivH/Leucine‑, isoleucine‑, valine‑, threonine‑, and alanine‑binding protein |
| * | ACB122 | 502,328 | 0 | T | G | 35.2% | 97.7 / 10.7 | 71 | intergenic (‑268/‑100) | estP/trpG | Esterase EstP/Anthranilate synthase component 2 |
| * | ACB122 | 1,482,014 | 0 | T | G | 34.7% | 59.6 / 10.3 | 49 | V173G (GTG→GGG) | CJ019_01397 | GTP cyclohydrolase 1 type 2 |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | ACB122 | 1734821 = | 75 (1.090) | 3 (0.050) | 3/236 | 6.8 | 4.3% | coding (148/753 nt) | CJ019_01633 | hypothetical protein |
| ? | ACB122 | = 5091718 | 63 (0.990) | coding (1513/1962 nt) | acs | Acetyl‑coenzyme A synthetase | |||||