| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | ACB122 | 4912602 | 4967483 | 54882 | 69 [1] | [0] 51 | [CJ019_04608]–[CJ019_04661] | [CJ019_04608],CJ019_04609,CJ019_04610,CJ019_04611,cheW,CJ019_04613,soj_1,motB_1,pomA,cheB1,CJ019_04618,cheZ,cheY,fliA,ylxH,CJ019_04623,srp54,flhA,rspR_2,ddlA,CJ019_04628,aar,CJ019_04630,iscS_3,ddl_2,CJ019_04633,flhB,fliR,fliQ,fliP,CJ019_04638,fliN,fliM,CJ019_04641,CJ019_04642,CJ019_04643,cheB_4,CJ019_04645,fliJ,fliI,CJ019_04648,fliG,fliF,fliE,atoC_3,atoS,norR_4,CJ019_04655,fliS,fliD,CJ019_04658,CJ019_04659,fabH,[CJ019_04661] |
AGCACTGCCAATCTCAACCCCGCCAGCCTGGCCGTGACTATGCCGGCTTTGGCGCGCAGCGCACTGGGCATGCTCGAGCGGGTCAGCCCCAAGCCGCAGCCGGGCGCGTTCCCATTACCGTCGCGCCTGCTCAAGGCCCTGGAAGAGGAAGGCGACCTGCAACAGCTGCTGCGCCTGGCTGCCGCTGCCGTTTCACGCTTGCAGAGCCACGCCATGAGCAGCCTGCAACAAACCGGCACGCTGGAAAACGGCAACCTGCAGACCACCTGGC > ACB122/4912467‑4912737 | aGCACTGCCAATCTCAACCCCGCCAGCCTGGCCGTGACTATGCCGGCTTTGGCGCGCAGCGCACTGGGCATTCTCGAGCGGGTCAGCCCCAAGCCGCAGCCGGGCGCGTTCCCATTACCGTCGCGCCTGCTCAAGgg > 5:122605‑M2/1‑135 (MQ=255)aGCACTGCCAATCTCAACCCCGCCAGCCTGGCCGTGACTATGCCGGCTTTGGCGCGCAGCGCACTGGGCATGCTCGAGCGGGTCAGCCCCAAGCCGCAGCCGGGCGCGTTCCCATTACCGTCGCGCCTGCTCAAGgg > 8:88701‑M2/1‑135 (MQ=255) tGCCAATCTCAACCCCGCCAGCCTGGCCGTGACTATGCCGGCTTTGGCGCGCAGCGCACTGGGCATGCTCGAGCGGGTCAGCCCCAAGCCGCAGCCGGGCGCGTTCCCATTACCGTCGCGCCTGCTCAAGggggtca > 5:46747‑M2/1‑130 (MQ=255) gCCAATCTCAACCCCGCCAGCCTGGCCGTGACTATGCCGGCTTTGGCGCGCAGCGCACTGGGCATGCTCGAGCGGGTCAGCCCCAAGCCGCAGCCGGGCGCGTTCCCATTACCGTCGCGCCTGCTCAAGggggtcat < 6:77287‑M2/137‑9 (MQ=255) ccAATCTCAACCCCGCCAGCCTGGCCGTGACTATGCCGGCTTTGGCGCGCAGCGCACTGGGCATGCTCGAGCGGGTCAGCCCCAAGCCGCAGCCGGGCGCGTTCCCATTACCGTCGCGCCTGCTCAAGggggtcatg < 4:342371‑M2/137‑10 (MQ=255) tctcAACCCCGCCAGCCTGGCCGTGACTATGCCGGCTTTGGCGCGCAGCGCACTGGGCATGCTCGAGCGGGTCAGCCCCAAGCCGCAGCCGGGCGCGTTCCCATTACCGTCGCGCCTGCTCAAGggggtcatgccga < 2:222904‑M2/137‑14 (MQ=255) aaCCCCGCCAGCCTGGCCGTGACTATGCCGGCTTTGGCGCGCAGCGCACTGGGCATGCTCGAGCGGGTCAGCCCCAAGCCGCCGCCGGGCGCGGTCCCATTACCGTCGCGCCTGCTCAAGgggggcctgccgagata < 6:21797‑M2/137‑18 (MQ=255) ccccGCCAGCCTGGCCGTGACTATGCCGGCTTTGGCGCGCAGCGCACTGGGCATGCTCGAGCGGGTCAGCCCCAAGCCGCAGCCGGGCGCGTTCCCATTACCGTCGCGCCTGCTCAAGggggtcatgccgagataag > 4:262816‑M2/1‑118 (MQ=255) cGCCAGCCTGGCCGTGACTATGCCGGCTTTGGCGCGCAGCGCACTGGGCATGCTCGAGCGGGTCAGCCCCAAGCCGCAGCCGGGCGCGTTCCCATTACCGTCGCGCCTGCTCAAGggggtcatgccgagataaggca < 7:300317‑M2/137‑23 (MQ=255) cGCCAGCCTGGCCGTGACTATGCCGGCTTTGGCGCGCAGCGCACTGGGCATGCTCGAGCGGGTCAGCCCCAAGCCGCAGCCGGGCGCGTTCCCATTACCGTCGCGCCTGCTCAAGggggtcatgccgagataaggca < 7:64324‑M2/137‑23 (MQ=255) gCCTGGCCGTGACTATGCCGGCTTTGGCGCGCAGCGCACTGGGCATGCTCGAGCGGGTCAGCCCCAAGCCGCCGCCGGGCGCGGTCCCATTACCGTCGCGCCCGCTCAAGggggtcatgccgagagaaggcaaaaat < 7:144230‑M2/137‑28 (MQ=255) gCCTGGCCGTGACTATGCCGGCTTTGGCGCGCAGCGCACTGGGCATGCTCGAGCGGGTCAGCCCCAAGCCGCAGCCGGGCGCGTTCCCATTACCGTCGCGCCTGCTCAAGggggtcatgccgagataaggcaaaaat < 5:346577‑M2/137‑28 (MQ=255) gCCTGGCCGTGACTATGCCGGCTTTGGCGCGCAGCGCACTGGGCATGCTCGAGCGGGTCAGCCCCAAGCCGCAGCCGGGCGCGTTCCCATTACCGTCGCGCCGGCTCAAGggggtcatgccgagataaggcaaaaat < 7:13452‑M2/137‑28 (MQ=255) gCCTGGCCGTGACTATGCCGGCTTTGGCGCGCAGCGCACTGGGCATGCTCGAGCGGGTCAGCCCCAAGCCGCAGCCGGGCGCGTTCCCATTACCGTCGCGCCGGCTCAAGggggtcatgccgagataaggcaaaaat < 8:319770‑M2/137‑28 (MQ=255) tGGCCGTGACTATGCCGGCTTTGGCGCGCAGCGCACTGGGCATGCTCGAGCGGGTCAGCCCCAAGCCGCAGCCGGGCGCGTTCCCATTACCGTCGCGCCTGCTCAAGggggtcatgccgagataaggcaaaaattat < 6:185286‑M2/137‑31 (MQ=255) tGGCCGTGACTATGCCGGCTTTGGCGCGCAGCGCACTGGGCATGCTCGAGCGGGTCAGCCCCAAGCCGCAGCCGGGCGCGTTCCCATTACCGTCGCGCCTGCTCAAGggggtcatgccgagataaagcaaaaattag < 6:80618‑M2/137‑31 (MQ=255) cGTGACTATGCCGG‑TTTGGCGCGCAGCGCACTGGGCATGCTCGAGCGGGTCAGCCCCAAGCCGCAGCCGGGCGCGTTCCCATTACCGTCGCGCCTGCTCAAGggggtcatgccgagataaggcaaaaattaggacat > 7:115894‑M2/1‑102 (MQ=255) gTGACTATGCCGGCTTTGGCGCGCAGCGCACTGGGCATGCTCGAGCGGGTCAGCCCCAAGCCGCAGCCGGGCGCGTTCCCATTACCGTCGCGCCTGCTCAAGggggtcatgccgagataaggcaaaaattaggacat > 3:143539‑M2/1‑102 (MQ=255) cTATGCCGGCTTTGGCGCGCAGCGCACTGGGCATGCTCGAGCGGGTCAGCCCCAAGCCGCAGCCGGGCGCGTTCCCATTACCGTCGCGCCTGCTCAAGggggtcatgccgagataaggcaaaaattaggacattcgt > 6:335823‑M2/1‑98 (MQ=255) cTATGCCGGCTTTGGCGCGCAGCGCACTGGGCATGCTCGAGCGGGTCAGCCCCAAGCCGCAGCCGGGCGCGTTCCCATTACCGTCGCGCCTGCTCAAGggggtcatgccgagataaggcaaaaattaggacattcgt > 8:80351‑M2/1‑98 (MQ=255) aTGCCGGCTTTGGCGCGCAGCGCACTGGGCATGCTCGAGCGGGTCAGCCCCAAGCCGCAGCCGGGCGCGTTCCCATTACCGTCGCGCCTGCTCAAGggggtcatgccgagataaggcaaaaattaggacattcgttg < 4:147726‑M2/137‑42 (MQ=255) aTGCCGGCTTTGGCGCGCAGCGCACTGGGCATGCTCGAGCGGGTCAGCCCCAAGCCCCAGCCGGGCGCGTTCCCAGTACCGTCGCGCCTGCTCAAGGCCCTGGAAGCGGAAGGCGACCTGCAAAAGCTGCTGCGCCt > 7:86756/1‑137 (MQ=255) tGCCGGCTTTGGCGCGCAGCGCACTGGGCATGCTCGAGCGGGTCAGCCCCAAGCCGCAGCCGGGCGCGTTCCCATTACCGTCGCGCCTGCTCAAGggggtcatgccgagataaggcaaaaattaggacattcgttct > 7:9951‑M2/1‑95 (MQ=255) gCTTTGGCGCGCAGCGCACTGGGCATGCTCGAGCGGGTCAGCCCCAAGCCGCAGCCGGGCGCGTTCCCATTACCGTCGCGCCTGCTCAAGggggtcatgccgagataaggcaaaaattaggacattcgttctctaag > 7:274437‑M2/1‑90 (MQ=255) gCTTTGGCGCGCAGCGCACTGGGCATGCTCGAGCGGGTCAGCCCCAAGCCGCAGCCGGGCGCGTTCCCATTACCGTCGCGCCTGCTCAAGggggtcatgccgagataaggcaaaaattaggacattcgttctctaag > 6:346577‑M2/1‑90 (MQ=255) gCTTTGGCGCGCAGCGCACTGGGCATGCTCGAGCGGGTCAGCCCCAAGCCGCAGCCGGGCGCGTTCCCATTACCGTCGCGCCTGCTCAAGggggtcatgccgagataaggcaaaaattaggacattcgttctctaag > 3:196907‑M2/1‑90 (MQ=255) tttGGCGCGCAGCGCACTGGGCATGCTCGAGCGGGTCAGCCCCAAGCCGCAGCCGGGCGCGTTCCCATTACCGTCGCGCCTGCTCAAGggggtcatgccgagataaggcaaaaattaggacattcgttctctaagct > 4:291917‑M2/1‑88 (MQ=255) gcagcgcaCTTGGCATGCTCGAGCGGGTCAGCCCCAAGCCGCAGCCGGGCGCGTTCCCATTACCGTCGCGCCTGCTCAAGggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatt > 6:216252‑M2/1‑80 (MQ=255) gcaCTGGGCATGCTCGAGCGGGTCAGCCCCAAGCCGCAGCCGGGCGCGTTCCCATTACCGTCGCGCCTGCTCAAGggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaac > 4:166040‑M2/1‑75 (MQ=255) gcaCTGGGCATGCTCGAGCGGGTCAGCCCCAAGCCGCAGCCGGGCGCGTTCCCATTACCGTCGCGCCTGCTCAAGggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaac > 5:152419‑M2/1‑75 (MQ=255) tGGGCATGCTCGAGCGGGTCAGCCCCAAGCCGCAGCCGGGCGCGTTCCCATTACCGTCGCGCCTGCTGAAGggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagt < 1:88004‑M2/137‑67 (MQ=255) cATGCTCGAGCGGGTCAGCCCCAAGCCGCAGCCGGGCGCGTTCCCATTACCGTCGCGCCTGCTCAAGggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagat > 7:157355‑M2/1‑67 (MQ=255) gCTCGAGCGGGTCAGCCCCAAGCCGCAGCCGGGCGCGTTCCCATTACCGTCGCGCCTGCTCAAGggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattag > 2:195468‑M2/1‑64 (MQ=255) cTCGAGCGGGTCAGCCCCAAGCCGCAGCCGGGCGCGTTCCCATTACCGTCGCGCCTGCTCAAGggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtattttaacgagtagattaga < 8:126011‑M2/137‑75 (MQ=255) cGAGCGGGTCAGCCCCAAGCCGCAGCCGGGCGCGTTCCCATTACAGTCGCGCCTGCTCAAGggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattataag < 4:261887‑M2/137‑77 (MQ=255) gCGGGTCAGCCCCAAGCCGCAGCCGGGCGCGTTCCCATTACCGTCGCGCCTGCTCAAGggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccc > 5:167323‑M2/1‑58 (MQ=255) gCGGGTCAGCCCCAAGCCGCAGCCGGGCGCGTTCCCATTACCGTCGCGCCTGCTCAAGggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccc > 7:324438‑M2/1‑58 (MQ=255) gCGGGGCAGCCCCAAGCCGCAGCCGGGCGCGTTCCCATTACCGTCGCGCCTGCTCAAGggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccc > 4:310637‑M2/1‑58 (MQ=255) gggTCAGCCCCAAGCCGCAGCCGGGCGCGGTCCCATTACCGTCGCGCCTGCTCAAGggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctg < 5:270264‑M2/137‑82 (MQ=255) ggTCAGCCCCAAGCCGCAGCCGGGCGCGTTCCCATTACCGTCGCGCCTGCTCAAGggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgc > 3:342371‑M2/1‑55 (MQ=255) gTCAGCCCCAAGCCGCAGCCGGGCGCGTTCCCATTACCGTCGCGCCTGCTCAAGggggtcatgccgagataaggcaaaaattaggacattcgt > 6:159365‑M2/1‑54 (MQ=255) gTCAGCCCCAAGCCGCAGCCGGGCGCGTTCCCATTACCGTCGCGCCTGCTCAAGggggtcatgccgagataaggcaaaaattaggacattcgt < 5:159365‑M2/93‑40 (MQ=255) tCAGCCCCAAGCCGCAGCCGGGCGCGTTCCCATTACCGTCGCGCCTGCTCAAGggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctc > 8:207950‑M2/1‑53 (MQ=255) aGCCCCAAGCCGCAGCCGGGCGCGTTCCCATTACCGTCGCGCCTGCTCAAGggggtcatgccgagataaggcaaaaattaggacattcgttctctaagct > 6:78999‑M2/1‑51 (MQ=255) aGCCCCAAGCCGCAGCCGGGCGCGTTCCCATTACCGTCGCGCCTGCTCAAGggggtcatgccgagataaggcaaaaattaggacattcgttctctaagct < 5:78999‑M2/100‑50 (MQ=255) aGCCCCAAGCCGCAGCCGGGCGCGTTCCCATTACCGTCGCGCCTGCTCAAGggggtcatgccgagataaggcaaaaattaggacattccttctctaagctagtgtatttaaaagagtagattatcagccctgctcag < 8:324438‑M2/137‑87 (MQ=255) aGCCCCAAGCCGCAGCCGGGCGCGTTCCCATTACCGTCGCGCCTGCTCAAGggggtcatgccgagataag < 5:117769‑M2/70‑20 (MQ=255) aGCCCCAAGCCGCAGCCGGGCGCGTTCCCATTACCGTCGCGCCTGCTCAAGggggtcatgccgagataag > 6:117769‑M2/1‑51 (MQ=255) cGCAGCCGGGCGCGTTCCCATTACCGTCGCGCCTGCTCAAGggggtcatgccgagataaggcaaaaattatgacattagttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgc < 3:75592‑M2/137‑97 (MQ=255) cGCAGCCGGGCGCGTTCCCATTACCGTCGCGCCTGCTCAAGggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgc < 8:299115‑M2/137‑97 (MQ=255) cGCAGCCGGGCGCGTTCCCATTACCGTCGCGCCTGCTCAAGggggtcatgccgagataaggcaaaaattaggacattagttctctaagctattgtatttaaaagagtagattagaagccctccacagcaaagacaga < 8:32131‑M2/137‑97 (MQ=255) cGCAGCCGGGCGCGTTCCCATTACCGTCGCGCCTGCGCAAGggggtcatgccgagataaggcaaaaattaggacattcgttctctaagttattgtttttttacgagtagattagtatccctgctgaggaaagactgg < 6:231035‑M2/137‑97 (MQ=255) ccGGGCGCGTTCCCATTACCGTCGCGCCTGCTCAAGggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgc < 5:284888‑M2/137‑102 (MQ=255) ccGGGCGCGTTCCCATTACCGTCGCGCCTGCTCAAGggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccc > 6:103927‑M2/1‑36 (MQ=255) ccGGGCGCGTTCCCATTACCGTCGCGCCTGCTCAAGggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccc < 5:103927‑M2/115‑80 (MQ=255) gggCGCGTTCCCATTACCGTCGCGCCTGCTCAAGggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttatacgagtagattagaagccctgctcagcaaagactgcttcgcgc > 1:307045‑M2/1‑34 (MQ=255) ccATTACCGTCGCGCCTGCTCAAGggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgcccaatcgctt > 6:245862‑M2/1‑24 (MQ=255) aTTACCGTCGCGCCTGCTCAAGggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgcccaatcgcttca > 7:299115‑M2/1‑22 (MQ=255) aTTACCGTCGCGCCTGCTCAAGggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgcccaatcgcttca > 5:306905‑M2/1‑22 (MQ=255) ttACCGTCGCGCCTGCTCAAGggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgcccaatcgcttcag > 2:230491‑M2/1‑21 (MQ=255) gcCTGCTCAAGggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgcccaatcgcttcagccatccattg > 8:165059‑M2/1‑11 (MQ=255) gcCTGCTCAAGggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgcccaatcgcttcagccatccattg > 5:237989‑M2/1‑11 (MQ=255) gcCTGCTCAAGggggtcatgccgagataaggcaaaaattaggacattagttctctaagctattgtatttaaacgagtagattagaagccctgctaagcaaagactgcttcgagcccaatcgcttcagccatccattg < 5:48945‑M2/137‑127 (MQ=255) gcCTGCTCAAGggggtcatgcccagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagacctgctcagcaaagactgcttcgcgcccaaacgcttcagccatccaatg < 5:285013‑M2/137‑127 (MQ=255) gcCTGCTCAACggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgcccaatcgcttcagccattcattg < 5:159299‑M2/137‑127 (MQ=255) gCTCAAGggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgcccaatcgcttcagccatccattgagga < 7:121966‑M2/137‑131 (MQ=255) cTCAAGggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgcccaatcgcttcagccatccattgaggaa > 1:239194‑M2/1‑6 (MQ=255) cTCAAGggggtcatgccgagataaggcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgcccaatcgcttcagccatccattgaggaa > 8:121966‑M2/1‑6 (MQ=255) gggggtcatgccgagataatgcaaaaattaggacattcgttctctaagctattgtatttaaacgagtagattagaagccctgctcagcaaagactgcttcgcgcccaatcgcttcagccatccattgaggaaggttt > 3:109087‑M2/1‑1 (MQ=255) | AGCACTGCCAATCTCAACCCCGCCAGCCTGGCCGTGACTATGCCGGCTTTGGCGCGCAGCGCACTGGGCATGCTCGAGCGGGTCAGCCCCAAGCCGCAGCCGGGCGCGTTCCCATTACCGTCGCGCCTGCTCAAGGCCCTGGAAGAGGAAGGCGACCTGCAACAGCTGCTGCGCCTGGCTGCCGCTGCCGTTTCACGCTTGCAGAGCCACGCCATGAGCAGCCTGCAACAAACCGGCACGCTGGAAAACGGCAACCTGCAGACCACCTGGC > ACB122/4912467‑4912737 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |