| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | ACB122 | 4912602 | 4967483 | 54882 | 69 [1] | [0] 51 | [CJ019_04608]–[CJ019_04661] | [CJ019_04608],CJ019_04609,CJ019_04610,CJ019_04611,cheW,CJ019_04613,soj_1,motB_1,pomA,cheB1,CJ019_04618,cheZ,cheY,fliA,ylxH,CJ019_04623,srp54,flhA,rspR_2,ddlA,CJ019_04628,aar,CJ019_04630,iscS_3,ddl_2,CJ019_04633,flhB,fliR,fliQ,fliP,CJ019_04638,fliN,fliM,CJ019_04641,CJ019_04642,CJ019_04643,cheB_4,CJ019_04645,fliJ,fliI,CJ019_04648,fliG,fliF,fliE,atoC_3,atoS,norR_4,CJ019_04655,fliS,fliD,CJ019_04658,CJ019_04659,fabH,[CJ019_04661] |
TGTTGCTGCAGCACCAGCAGGCGCGCAGCGCCGACCGGGTCGTCACCGGCCGATTGGATGCGCGATTTGGAGGTGACCTGTTCGGTAATCTTGGCCAAGTTGGAGTAGTTCTGGGAGTAGCTAGTGGCGCTGGTCTCATAGAACTGAGCAGTTGAAATACGCACGGTCCGCTACTCCTTACAGGGCGTTAATCAGGGTGGAGAAGGTTTCTTGCGCCGCCTTGATGATCTGCGACGACGCTGTGTAGTAGTGCTGGAACTTCACCAGGCTG > ACB122/4967349‑4967619 | gcgaggcaaaagcatcatcatagtcggctagccagacggtggatgaccagcaagccactgcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTc < 4:89975‑M2/2‑1 (MQ=255) aaagcatcagcatagacggctagccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccgcTCATAGAACt > 3:9249‑M2/128‑137 (MQ=255) aaagcatcagcatagacggctagccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTCATAGAACt < 4:304677‑M2/10‑1 (MQ=255) aaagcatcagcatagacggctagacagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTCATAGAACt < 8:114178‑M2/10‑1 (MQ=255) catcagcatagacggctagccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTCATAGAACTgcgc > 6:180667‑M2/124‑137 (MQ=255) catcagcatagacggctagccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTCATAGAACTGAGc < 8:341915‑M2/14‑1 (MQ=255) cagcatagacggctagccagacggtggattaccagcaagccactgcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgcgttatctcggcataaccccTCATAGAACTGAGCAGt < 8:130684‑M2/17‑1 (MQ=255) ggctagccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTCATAGAACTGAGCAGTTGAAATACGc < 4:314629‑M2/27‑1 (MQ=255) ggctagccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTCATAGAACTGAGCAGTTGAAATACGc < 5:65758‑M2/27‑1 (MQ=255) gctagccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTCATAGAACTGAGCAGTTGAAATACGCa > 5:312513‑M2/110‑137 (MQ=255) gccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTCATAGAACTGAGCGGTTGAAATACGCACGGt < 7:199755‑M2/32‑1 (MQ=255) ccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTCATAg > 6:143534‑M2/105‑110 (MQ=255) ccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTCATAg < 5:143534‑M2/6‑1 (MQ=255) ccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTCATAGAACTGAGCAGTTGAAATACGCACGGTc > 2:48877‑M2/105‑137 (MQ=255) ccagacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTCATAGAACTGAGCAGTTGAAATACGCACGGTc > 4:98835‑M2/105‑137 (MQ=255) agacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTCATAGAACt > 2:85008‑M2/103‑112 (MQ=255) agacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTCATAGAACt < 1:85008‑M2/10‑1 (MQ=255) cacggtggatgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTCATAGAACTGAGCAGTTGAAATACGCACGGTCCGc < 2:169545‑M2/36‑1 (MQ=255) atgaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTCATAGAACTGAGCAGTTGAAATACGCACGGTCCGCTACTCCtt < 3:98835‑M2/44‑1 (MQ=255) gaccagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTCATAGAACTGAGCAGTTGAAATACGCACGGTCCGCTACTCCTtaa > 5:251373‑M2/92‑136 (MQ=255) cagcaagccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTCATAGAACTGAGCAGTTGAAATACGCACGGTCCGCTACTCCTTACAgg < 2:231399‑M2/49‑1 (MQ=255) agccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTCATAGAACTGAGCAGTTGAAATACGCACGGTCCGCTACTCCtt < 6:17508‑M2/44‑1 (MQ=255) agccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTCATAGAACTGAGCAGTTGAAATACGCACGGTCCGCTACTCCtt > 5:17508‑M2/84‑127 (MQ=255) agccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTCATAGAACTGAGCAGTTGAAATACGCACGGTCCGCTACTCCTTACAGGGCGtt < 4:310575‑M2/54‑1 (MQ=255) agccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTCATAGAACTGAGCAGTTGAAATACGCACGGTCCGCTACTCCTTACAGGGCGtt > 3:97257‑M2/84‑137 (MQ=255) agccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTCATAGAACTGAGCAGTTGAAATACGCACGGTCCGCTACTCCTTACAGGGCGtt > 6:274453‑M2/84‑137 (MQ=255) agccacggcctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTCATAGAACTGAGCAGTTGAAATACGCACGGTCCGCTACTCCTTACAGGGCGtt > 2:120559‑M2/84‑137 (MQ=255) ctctcgaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTCATAGAACTGAGCAGTTGAAATACGCACGGTCCGCTACTCCTTACAGGGCGTTAATCAGGGt > 8:342439‑M2/75‑137 (MQ=255) tctcgaataaacttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTCATAGAACTGAGCAGTTGAAATACGCACGGTCCGCTACTCCTTACAGGGCGTTAATCAGGGTg < 5:301812‑M2/64‑1 (MQ=255) gaataaccttttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTCATAGAACTGAGCAGTTGAAATACGCACGGTCCGCTACTCCTTACAGGGCGTTAATCAGGGTGgaga > 8:76082‑M2/70‑137 (MQ=255) tttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTCATAGAACTGAGCAGTTGAAATACg < 5:1849‑M2/26‑1 (MQ=255) tttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTCATAGAACTGAGCAGTTGAAATACg > 6:1849‑M2/61‑86 (MQ=255) tttaaatcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTCATAGAACTGAGCAGTTGAAATACGCACGGTCCGCTACTCCTTACAGGGCGTTAATCAGGGTGGAGAAGGTTTCtt < 2:82184‑M2/77‑1 (MQ=255) atcatatatttacagaacgaatgtcctaatttttgccttatctcggcataaccccTCATAGAACTGAGCAGTTGAAATACGCACGGTCCGCTACTCCTTACAGGGCGTTAATCAGGGTGGAGAAGGTTTCTTGcgcc > 8:160468‑M2/56‑137 (MQ=255) acgaatgtcctaatttttgccttatctcggcataaccccTCATAGAACTGAGCAGTTGAAATACGCACGGTCCGCTACTCCTTACAGGGCGTTAATCAGGGTGGAGAAGGTTTCTTGCGCCGCCTTGATGATCTGcg < 1:205680‑M2/98‑1 (MQ=255) cgaatgtcctaatttttgccttatctcggcataaccccTCATAGAACTGAGCAGTTGAAATACGCACGGTCCGCTACTCCTTACAGGGCGTTAATCa > 7:190639‑M2/39‑97 (MQ=255) cgaatgtcctaatttttgccttatctcggcataaccccTCATAGAACTGAGCAGTTGAAATACGCACGGTCCGCTACTCCTTACAGGGCGTTAATCa < 8:190639‑M2/59‑1 (MQ=255) acgaatttcctaattttgccttatctcggcataaccccTCATAGAACTGAGCAGTTGAAATACGCACGGTCAGCTACTCCTTACAGGGCGTTAATCAGGGTGGAGAATGTTTCTTGCGCCGCCTTGATGATCTGcga < 5:170410‑M2/99‑1 (MQ=255) gaatgtcctaattttttccttatctcggcataaccccTCATAGAACTGAGCAGTTGAAATACACACGGTCCGCTACTCCTTACAGGGCGTTAATc < 5:26477‑M2/58‑1 (MQ=255) gaatgtcctaatttttgccttatctcggcataaccccTCATAGAACTGAGCAGTTGAAATACGCACGGTCCGCTACTCCTTACAGGGCGTTAATCAGGGTGGAGAAGGTTTCTTGCGCCGCCTTGATGATCTGcgac > 3:338721‑M2/38‑137 (MQ=255) gaatgtcctaatttttgccttatctcggcataaccccTCATAGAACTGAGCAGTTGAAATACGCACGGTCCGCTACTCCTTACAGGGCGTTAATCAGGGTGGAGAAGGTTTCTTGCGCCGCCTTGATGATCTGcgac > 1:273127‑M2/38‑137 (MQ=255) gaatgtcctaatttttgccttatctcggcataaccccTCATAGAACTGAGCAGTTGAAATACGCACGGTCCGCTACTCCTTACAGGGCGTTAATCAGGGTGGAGAAGGTTTCTTGCGCCGCCTTGATGATCTGcgac > 1:268735‑M2/38‑137 (MQ=255) gaatgtcctaatttttgccttatctcggcataaccccTCATAGAACTGAGCAGTTGAAATACACACGGTCCGCTACTCCTTACAGGGCGTTAATc > 6:26477‑M2/38‑95 (MQ=255) aatgtcctaatttttgccttatctcggcataaccccTCATAGAACTGAGCAGTTGAAATACGCACGGTCCGCTACTCCTTACAGGGCGTTAATCAGGGTGGAGAAGGTTTCTTGCGCCGCCTTGATGATCTGcgacg < 6:312513‑M2/101‑1 (MQ=255) aatgtcctaatttttgccttatctcggcataaccccTCATAGAACTGAGCAGTTGAAATACGCACGGTCCGCTACTCCTTACAGGGCGTTAATCAGGGTGGAGAAGGTTTCTTGCGCCGCCTTGATGATCTGcgacg < 7:342439‑M2/101‑1 (MQ=255) aatgtcctaatttttgccttatctcggcataaccccTCATAGAACTGAGCAGTTGAAATACGCACGGTCCGCTACTCCTTACAGGGCGTTAATCAGGGTGGAGAAGGTTTCTTGCGCCGCCTTGATGATCTGcgacg < 3:276747‑M2/101‑1 (MQ=255) atttttgccttatctcggcataaccccTCATAGAACTGAGCAGTTGAAATACGCACGGCCCGCTACTCCTTACAGGGCGTTAATCAGGGTGGAGAAGGTTTCTTGCGCCGCCTTGATGATCTGCGACGACGCTgtgt > 7:333958‑M2/28‑137 (MQ=255) tttgccttatctcggcataaccccTCATAGAACTGAGCAGTTGAAATACGCACGGTCCGCTACTCCTTACAGGGCGTTAATCAGGGTGGAGAAGGTTTCTTGAGCCGCCTTGATGATCTGCGACGACGCTGTgtagt > 3:148968‑M2/25‑137 (MQ=255) gccttatctcggcataaaccaTCATAGAACTGAGCAGTTGAAATACGCACGGTCCGCTACTCCTTACAGGGAGTTAATCAGGGTGGAGAAGGTTTCTTGCGACGCCTTGATGATCTGCGACGACGCTGTGTagtagt < 3:276720‑M2/116‑1 (MQ=255) cttatctcggcataaccccTCATAGACCTGAGCAGTTGAAATACGCACGGTCAGCTACTCCTTACAGGGCGTTAATCAGGGTGGAGAAGGTTTCTTGCGCCGGCTTGATGATCTGCGACGACGCTGTGTAGTAGTGc > 5:263394‑M2/20‑137 (MQ=255) cTCATAGAACTGAGCAGTTGAAATACGCACGGTCCGCTACTCCTTACAGGGCGTTAATCAGGGTGGAGAAGGTTTCTTGCGCCGCCTTGATGATCTGCGACGACGCTGTGTAGTAGTGCTGGAACTTCACCAGGCTg > 3:115495‑M2/2‑137 (MQ=255) | TGTTGCTGCAGCACCAGCAGGCGCGCAGCGCCGACCGGGTCGTCACCGGCCGATTGGATGCGCGATTTGGAGGTGACCTGTTCGGTAATCTTGGCCAAGTTGGAGTAGTTCTGGGAGTAGCTAGTGGCGCTGGTCTCATAGAACTGAGCAGTTGAAATACGCACGGTCCGCTACTCCTTACAGGGCGTTAATCAGGGTGGAGAAGGTTTCTTGCGCCGCCTTGATGATCTGCGACGACGCTGTGTAGTAGTGCTGGAACTTCACCAGGCTG > ACB122/4967349‑4967619 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |