mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | ACB122 | 3,440,363 | 0 | A | C | 54.5% | 5.6 / 16.7 | 23 | A24A (GCA→GCC) | CJ019_03266 | hypothetical protein |
| * | ACB122 | 3,316,655 | 0 | T | G | 52.2% | 9.0 / 19.8 | 23 | T99P (ACG→CCG) | CJ019_03117 | hypothetical protein |
| * | ACB122 | 5,688,637 | 0 | A | C | 47.9% | 1.3 / 17.5 | 48 | S236R (AGC→CGC) | pyrC' | Dihydroorotase‑like protein |
| * | ACB122 | 5,022,943 | 0 | C | A | 36.6% | 53.6 / 17.0 | 41 | intergenic (+52/‑447) | doeA/proP_6 | Ectoine hydrolase/Proline/betaine transporter |
| * | ACB122 | 1,488,128 | 0 | G | T | 32.4% | 54.1 / 14.3 | 38 | T124N (ACC→AAC) | decR_2 | DNA‑binding transcriptional activator DecR |
| * | ACB122 | 6,038,658 | 0 | C | A | 31.1% | 74.0 / 16.5 | 61 | A37S (GCC→TCC) | puuD_3 | Gamma‑glutamyl‑gamma‑aminobutyrate hydrolasePuuD |
| * | ACB122 | 5,384,407 | 0 | C | G | 30.0% | 43.2 / 12.4 | 30 | intergenic (+528/‑330) | CJ019_05064/CJ019_05067 | putative protein/hypothetical protein |
| * | ACB122 | 1,537,415 | 0 | C | G | 27.3% | 29.9 / 10.7 | 22 | A388G (GCG→GGG) | mdfA | Multidrug transporter MdfA |
| * | ACB122 | 434,376 | 0 | G | . | 25.0% | 49.7 / 14.2 | 20 | coding (207/1173 nt) | bioF | 8‑amino‑7‑oxononanoate synthase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | ACB122 | 726600 = | 34 (0.700) | 4 (0.080) | 3/258 | 5.8 | 8.8% | intergenic (+87/+471) | PP_RS08755/ndh | tRNA‑Asp/NADH dehydrogenase |
| ? | ACB122 | = 2264534 | 49 (1.010) | intergenic (+3/‑63) | PP_RS08750/PP_RS08755 | tRNA‑Val/tRNA‑Asp | |||||
| * | ? | ACB122 | 726600 = | 34 (0.700) | 4 (0.080) +A |
3/258 | 5.8 | 16.4% | intergenic (+87/+471) | PP_RS08755/ndh | tRNA‑Asp/NADH dehydrogenase |
| ? | ACB122 | = 1891898 | 7 (0.140) | intergenic (+2/‑12) | PP_RS08750/PP_RS08755 | tRNA‑Val/tRNA‑Asp | |||||
| * | ? | ACB122 | 726600 = | 34 (0.700) | 4 (0.080) +A |
3/258 | 5.8 | 15.5% | intergenic (+87/+471) | PP_RS08755/ndh | tRNA‑Asp/NADH dehydrogenase |
| ? | ACB122 | = 1891562 | 10 (0.200) | intergenic (+2/‑12) | PP_RS08750/PP_RS08755 | tRNA‑Val/tRNA‑Asp | |||||