breseq  version 0.35.4  revision f352f80f4bc9 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence	position	mutation	annotation	gene	description
RA	44,301	(T)9→8	intergenic (+132/‑359)	oprD_1 → / → czcR_2	Porin D/Transcriptional activator protein CzcR
RA	120,983	(T)9→8	intergenic (+280/+92)	polA → / ← engB	DNA polymerase I/putative GTP‑binding protein EngB
RA	179,484	T→C	C316R (TGC→CGC)	CJ019_00182 →	hypothetical protein
JC	4,257,352	+GCGGCCGC	intergenic (‑281/+7)	CJ019_03991 ← / ← CJ019_03994	putative ABC transporter ATP‑binding protein/hypothetical protein
MC JC	4,963,095	Δ12,336 bp		[CJ019_04659]–[flgE]	[CJ019_04659], fabH, CJ019_04661, CJ019_04662, CJ019_04663, flgI, flgH, flgG, flgF, CJ019_04668, [flgE]
RA	5,226,693	G→A	I91I (ATC→ATT)	CJ019_04921 ←	hypothetical protein
RA	5,756,060	(A)6→5	coding (781/834 nt)	CJ019_05400 →	hypothetical protein

Unassigned missing coverage evidence
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	ACB122	87936	88062	127	16 [15]	[15] 16	[CJ019_00094]–[CJ019_00095]	[CJ019_00094],[CJ019_00095]
*	*	÷	ACB122	517190	517319	130	19 [13]	[14] 16	tyrS/birA	Tyrosine‑‑tRNA ligase/Bifunctional ligase/repressor BirA
*	*	÷	ACB122	607293	607392	100	16 [15]	[15] 16	dxs/ispA	1‑deoxy‑D‑xylulose‑5‑phosphate synthase/Farnesyl diphosphate synthase
*	*	÷	ACB122	674234	674381	148	16 [15]	[15] 16	[nimR_1]–[mcpH_2]	[nimR_1],[mcpH_2]
*	*	÷	ACB122	1563448	1563516	69	16 [15]	[15] 16	[pcaF_1]	[pcaF_1]
*	*	÷	ACB122	1923385	1923523	139	16 [14]	[15] 17	[apeB]	[apeB]
*	*	÷	ACB122	1925644	1925716	73	16 [15]	[15] 16	rluA/minE	Dual‑specificity RNA pseudouridine synthaseRluA/Cell division topological specificity factor
*	*	÷	ACB122	2234285	2234420	136	16 [15]	[15] 16	[gltX]	[gltX]
*	*	÷	ACB122	3046190	3046357	168	19 [14]	[14] 17	[rcsC_5]–[degU_2]	[rcsC_5],[degU_2]
*	*	÷	ACB122	3769353	3769508	156	16 [14]	[14] 16	[CJ019_03581]	[CJ019_03581]
*	*	÷	ACB122	4163771	4163886	116	16 [14]	[15] 16	katG/leuO_2	Catalase‑peroxidase/HTH‑type transcriptional regulator LeuO
*	*	÷	ACB122	4344753	4344880	128	16 [15]	[14] 17	nmoA	Nitronate monooxygenase
*	*	÷	ACB122	4732402	4732502	101	17 [15]	[15] 16	[CJ019_04468]	[CJ019_04468]
*	*	÷	ACB122	4801812	4802333	522	23 [12]	[15] 17	CJ019_04509/dsbD_2	hypothetical protein/Thiol:disulfide interchange protein DsbD
*	*	÷	ACB122	4846368	4846455	88	16 [15]	[14] 17	recR/ybaB	Recombination protein RecR/Nucleoid‑associated protein YbaB
*	*	÷	ACB122	4944867	4944994	128	16 [15]	[14] 18	[CJ019_04642]	[CJ019_04642]
*	*	÷	ACB122	5193587	5193683	97	17 [12]	[15] 16	[gltR_4]–[CJ019_04888]	[gltR_4],[CJ019_04888]
*	*	÷	ACB122	5250762	5250871	110	17 [15]	[14] 20	[CJ019_04947]–[CJ019_04948]	[CJ019_04947],[CJ019_04948]
*	*	÷	ACB122	5477735	5477851	117	16 [15]	[14] 16	[purH]	[purH]
*	*	÷	ACB122	5499113	5499298	186	17 [15]	[13] 18	[CJ019_05176]	[CJ019_05176]
*	*	÷	ACB122	5550445	5550618	174	19 [15]	[15] 16	[purA]	[purA]
*	*	÷	ACB122	5890376	5890465	90	19 [13]	[15] 16	CJ019_05517/czcA_3	hypothetical protein/Cobalt‑zinc‑cadmium resistance protein CzcA
*	*	÷	ACB122	5895760	5895859	100	16 [15]	[14] 16	[CJ019_05521]	[CJ019_05521]
*	*	÷	ACB122	5977049	5977144	96	18 [15]	[15] 19	[sasA_19]	[sasA_19]