New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	ACB122	4383137 =	NA (NA)	5 (0.090)	5/232	NT	5.9%	intergenic (‑13/+70)	CJ019_04133/CJ019_00698	hypothetical protein/hypothetical protein
	?	ACB122	= 5388386	80 (1.430)					intergenic (‑1746/‑36)	CJ019_05070/CJ019_05072	hypothetical protein/hypothetical protein

AGAACCCCGGCGCGATGGATTCGCGTTTGACGTCACTGAGAGGGCATTCAACCCCGCCCGTGACGGTGAACTGGGCGCCATCAGCCTTGATGAAGACGGTGCCTGCGACTTTCTTGCCCATGGGCAACTCCTATCGAGTAGGAGGCGGATTCACACCCGCCGTCCTCTCACACCACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGCGGCTAAGCCGGTTAATCGTATCCAGTATCGAGACCAGCCCGAGCCG  >  ACB122/4383004‑4383263                                                                                                                                      |                                                                                                                               agaaCCCCGGCGCGATGGATTCGCGTTTGACGTCACTGAGCGGGCATTCAGCCCCGCCCGTGACGGTGGACTGGGCGCCATCAGCCGTGATGAAGACGGTGCCTGCGCCGTTCTTTCCCATGGGCAACTCCTATc                                                                                                                               >  6:190397/1‑135 (MQ=255)        cGGCGCGCTGGATTCGCGGTTTACGTCACTGAGAGGGCATTCAACCCCGCCCGGGACGGTGAACTGGGCGCCATCAGCCTTGATGAAGCCGGTGGCTGCGACTTTCTTGCCCCTGGGCAACTCCTATAGAGTagg                                                                                                                        >  6:264865/1‑135 (MQ=255)        cGGCGCGATGGATTCGCGTTTGACGTCACTGAGAGGGCATTCAACCCCGCCCGTGACGGTGAACTGGGCGCCATCAGCCTTGATGAAGACGGTGCCTGCGACTTTCTTGCCCATGGGCAACTCCTATCGAGTag                                                                                                                         >  8:250757/1‑134 (MQ=255)             cgATGGATTCGCGTTTGACGTCACTGAGAGGGCATTCAACCCCGCCCGTGACGGTGAACTGGGCGCCATCAGCCTTGATGAAGACGGTGCCTGCGACTTTCTTGCCCATGGGCAACTCCTATCGAGTAGGAGGCgg                                                                                                                  >  3:148660/1‑136 (MQ=255)                  gATTAGCGTTTTACGTGACTGAGAGGGCATTAAACCCCGCCCCTGACGGTGAACTGGGCGCCCTAAGACGTGATGAAGACGGTGGCATCGACATTAATTGCCAAGGGCAACTCCAATCGAGTAAGAAGCGGGTTc                                                                                                              >  6:362882/1‑135 (MQ=255)                   aTTCGCGTTTGACGTCACTGAGAGGGCATTCAACCCCGCCCGTGACGGTGAACTGGGCGCCATCAGCCGTGATGAAGACGGTGCCTGCGCCTTTCTTGCCCATGGGCAACTCCTATCCAGTAGGAGGCGGAGTca                                                                                                             >  5:206677/1‑135 (MQ=255)                       gcgTTTGACGTCACTGAGAGGGCATTCAACCCCGCCCGTGACGGTGAACTGGGCGCCATCAGCCTTGATGAAGACGGTGCCTGCGACTTTCTTGCCCATGGGCAACTCCTATCGAGTAGGAGGCGGATTCACAcc                                                                                                         <  2:272236/135‑1 (MQ=255)                        cgTTTGACGTCACTGAGAGGGCATTCAACCCCGCCCGTGACGGTGAACTGGGCGCCATCAGCCTTGATGAAGACGGTGCCTGCGACTTTCTTGCCCATGGGCAACTCCTATCGAGTAGGAGGCGGATTCACACccg                                                                                                       <  7:250757/136‑1 (MQ=255)                          tttGACGTCACTGAGAGGGCATTCAACCCCGCCCGTGACGGTGAACTGGGCGCCATCAGCCTTGATGAAGACGGTGCCTGCGACTTTCTTGCCCATGGGCAACTCCTATCGAGTAGGAGGCGGATTCACACccgc                                                                                                      <  1:89593/135‑1 (MQ=255)                          tttGACGTCACTGAGAGGGCATTCAACCCCGCCCGTGACGGTGAACTGGGCGCCATCAGCCTTGATGAAGACGGGGCCTGCGACTTTCTTGCCCATGGGCAACTCCTATCGAGTAGGAGGCGGATTCACACccgc                                                                                                      <  1:373852/135‑1 (MQ=255)                             gACGTCACTGAGAGGGCATTCAACCCCGCCCGTGACGGTGAACTGGGCGCCATCAGCCTTGATGAAGACGGTGCCTGCGACTTTCTTGCCCATGGGCAACTCCTATCGAGTAGGAGGCGGATTCACACccgccg                                                                                                    <  1:372616/134‑1 (MQ=255)                             gACGTCACTGAGAGGGCATTCAACCCCGCCCGTGACGGTGAACTGGGCGCCATCAGCCTTGATGAAGACGGTGCCTGCGACTTTCTTGCCCATGGGCAACTCCTATCGAGTAGGAGGCGGATTCACACccgccg                                                                                                    <  5:393441/134‑1 (MQ=255)                               cGTCACTGAGAGGGCATTCAACCCCGCCCGTGACGGTGAACTGGGCGCCATCAGCCTTGATGAAGACGGTGCCTGCGACTTTCTTGCCCATGGGCAACTCCTATCGAGTAGGAGGCGGATTCACACCCGCCGTCct                                                                                                >  4:347265/1‑136 (MQ=255)                                 gcACTGAGAGGGCATTCAACCCCGCCCGTGACGGTGAACTGGGCGCCATCAGCCTTGATGAAGACGGTGCCTGCGACTTTCTTGCCCATGGGCAACTCCTATCGAGTAGGAGGCGGATTCACACCCGCCGTCctc                                                                                               <  5:264865/134‑1 (MQ=255)                                      gagaGGGCATTCAACCCCGCCCGTGACGGTGAACTGGGCGCCATCAGCCTTGATGAAGACGGTGCCTGCGACTTTCTTGCCCATGGGCAACTCCTATCGAGTAGGAGGCGGATTCACACCCGCCGTCCTCTCacac                                                                                         <  8:115532/136‑1 (MQ=255)                                       agagGGCATTCAACCCCGCCCGTGACGGTGAACTGGGCGCCATCAGCCTTGATGAAGACGGTGCCTGCGACTTTCTTGCCCATGGGCAACTCCTATCGAGTAGGAGGCGGATTCACACCCGCCGTCCTCTcaca                                                                                          <  8:10830/134‑1 (MQ=255)                                       agagGGCATTCAACCCCGCCCGTGACGGTGAACTGGGCGCCATCAGCCTTGATGAAGACGGTGCCTGCGACTTTCTTGCCCATGGGCAACTCCTATCGAGTAGGAGGCGGATTCACACCCGCCGTCCTCTCacac                                                                                         <  4:148660/135‑1 (MQ=255)                                       agagGGCATTCAACCCCGCCCGTGACGGTGAACTGGGCGCCATCAGCCTTGATGAAGACGGTGCCTGCGACTTTCTTGCCCATGGGCAACTCCTATCGAGTAGGAGGCGGATTCACACCCGCCGTCCTCTCacac                                                                                         <  1:248885/135‑1 (MQ=255)                                          gggCATTCAACCCCGCCCGTGACGGTGAACTGGGCGCCATCAGCCTTGATGAAGACGGTGCCTGCGACTTTCTTGCCCATGGGCAACTCCTATCGAGTAGGAGGCGGATTCACACCCGCCGTCCTCTCAcaccac                                                                                      <  5:182576/135‑1 (MQ=255)                                            gCATTCAACCCCGCCCGTGACGGTGAACTGGGCGCCATCAGCCTTGATGAAGACGGTGCCTGCGACTTTCTTGCCAATGGGCAACTCCTATCGAGTAGGAGGCGGATTCACACCCGACGTCCTCTCACACCACCGt                                                                                   >  7:39442/1‑136 (MQ=255)                                              agtCAACCCCGCCCGTGACGGTGAACTGGGCGCCATCAGCCTTGATGAAGACGGTGCCTGCGACTTTCTTGCCCATGGGCAACTCCTATCGAGTAGGAGGCGGATTCACACCCGCCGTCCTCTCACACCACCGTGc                                                                                 <  3:320222/134‑1 (MQ=255)                                              aTTCAACCCCGCCCGTGACGGTGAACTGGGCGCCATCAGCCTTGATGAAGACGGTGCCTGCGACTTTCTTGCCCATGGGCAACTCCTATCGAGTAGGAGGCGGATTCACACCCGCCGTCCTCTCACACCACCGTGc                                                                                 >  3:160500/1‑136 (MQ=255)                                              aTTCAACCCCGCCCGTGACGGTGAACTGGGCGCCATCAGCCTTGATGAAGACGGTGCCTGCGACTTTCTAGCCCATGGGCAACTCCTATCGAGTAGGAGGCGGATTCACACCCGCCGTCCTCTCACACCACCGTg                                                                                  >  6:376934/1‑135 (MQ=255)                                              aTTCAACCCCGCCCGTGAAGGTGAACTGGGCGCCATCAGCCTTGATGAAGACGGTGCCTGCGACTTTCTTGCCCATGGGCAACTCCTATCGAGTAGGAGGCGGATTCACACCCGCCGTCCTCTCACACCACCGTGc                                                                                 <  3:207128/136‑1 (MQ=255)                                               ttCAACCCCGCCCGTGCCGGTGAACTGGGCGCCATCAGCCTTGATGAAGACGGTGCCTGCGACTTTCTTGCCCATGGGCAACTCCTATCGAGTAGGAGGCGGATTCACACCCGCCGTCCTCTCACACCACCGTGc                                                                                 <  1:134655/135‑1 (MQ=255)                                               ttCAACCCCGCCCGTGACGGTGAACTGGGCGCCATCAGCCTTGATGAAGACGGTGCCTGCGACTTTCTTGCCCATGGGCAACTCCTATCGAGTAGGAGGCGGATTCACACCCGCCGTCCTCTCACACCACCGTGc                                                                                 <  5:362882/135‑1 (MQ=255)                                                 cAACCCCGCCCGTGACGGTGAACTGGGCGCCATCAGCCTTGATGAAGACGGTGCCTGCGACTTTCTTGCCCATGGGCAACTCCTATCGAGTAGGAGGCGGATTCACACCCGCCGTCCTCTCACACCACCGTGCGt                                                                               <  4:374633/135‑1 (MQ=255)                                                   aCCCCGCCCGTGACGGTGAACTGGGCGCCATCAGCCTTGATGAAGACGGTGCCTGCGACTTTCTTGCCCATGGGCAACTCCTATCGAGTAGGAGGCGGATTCATACCCGCCGTCCTCTCACACCACCGTGCGTACg                                                                            <  8:185463/136‑1 (MQ=255)                                                    ccccGCCCGTGACGGTGAACTGGGCGCCATCAGCCTTGATGAAGACGGTGCCTGCGACTTTCTTGCCCATGGGCAACTCCTATCGAGTAGGAGGCGGATTCACACCCGCCGTCCTCTCACACCACCGTGCGTACg                                                                            <  6:253567/135‑1 (MQ=255)                                                        gcccgTGACGGTGAACTGGGCGCCATCAGCCTTGATGAAGACGGTGCCTGCGACTTTCTTGCCCATGGGCAACTCCTATCGAGTAGGAGGCGGATTCACACCCGCCGTCCTCTCACACCACCGTGCGTACGGTTcc                                                                       >  7:111162/1‑136 (MQ=255)                                                        gcccgTGACGGTGAACTGGGCGCCATCAGCCTTGATGAAGACGGTGCCTGCGACTTTCTTGCCCATGGGCAACTCCTATCGAGTAGGAGGCGGATTCACACCCGCCGTCCTCTCACACCACCGTGCGTACGGTTcc                                                                       <  3:265804/136‑1 (MQ=255)                                                             tGACGGTGAACTGGGCGCCATCAGCCTTGATGAAGACGGTGCCTGCGACTTTCTTGCCCATGGGCAACTCCTATCGAGTAGGAGGCGGATTCACACCCGCCGTCCTCTCACACCACCGTGCGTACGGTTCCGTac                                                                   <  1:360139/135‑1 (MQ=255)                                                              gACGGTGAACTGGGCGCCATCAGCCTTGATGAAGACGGTGCCTGCGACTTTCTTGCCCATGGGCAACTCCTATCGAGTAGGAGGCGGATTCACACCCGCCGTCCTCTCACACCACCGTGCGTACGGTTCCGTaca                                                                  <  5:314875/135‑1 (MQ=255)                                                                   tGAACTGGGCGCCATCAGCCTTGATGAAGACGGGGCCTGCGACTTTCTTGCCCATGGGCAACTCCTATCGAGTAGGAGGCGGATTCACACCCGCCGTCCTCTCACACCACCGTGCGTACGGTTCCGTACAcggcgg                                                            <  4:115919/136‑1 (MQ=255)                                                                             gcCATCAGCCTTGATGAAGACGGTGCCTGCGACTTTCTTGCCCATGGGCAACTCCTATCGAGTAGGAGGCGGATTCACACCCGCCGTCCTCTCACACCACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTAc                                                  >  7:164470/1‑136 (MQ=255)                                                                              ccATCAGCCTTGATGAAGACGGTGCCTGCGACTTTCTTGCCCATGGGCAACTCCTATCGAGTAGGAGGCGGATTCACACCCGCCGTCCTCTCACACCACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTAc                                                  >  6:264248/1‑135 (MQ=255)                                                                                  cAGCCTTGATGAAGACGGTGCCTGCGACTTTCTTGCCCATGGGCAACTCCTATCGAGTAGGAGGCGGATTCACACCCGCCGTCCTCTCACACCACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGCGGc                                             >  3:135505/1‑136 (MQ=255)                                                                                   aGCCTTGATGAAGACGGTGCCTGCGACTTTCTTGCCCATGGGCAACTCCTATCGAGTAGGAGGCGGATTCACACCCGCCGTCCTCTCACACCACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGCGGCt                                            <  7:7000/136‑1 (MQ=255)                                                                                    gCCTTGATGAAGACGGTGCCTGCGACTTTCTTGCCCATGGGCAACTCCTATCGAGTAGGAGGCGGATTCACACCCGCCGTCCTCTCACACCACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGCGGCt                                            <  1:46813/135‑1 (MQ=255)                                                                                       ttGATGAAGACGGTGCCTGCGACTTTCTTGCCCATGGGCAACTCCTATCGAGTAGGAGGCGGATTCACACCCGCCGTCCTCTCACACCACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGCGGCTAAGc                                        >  4:328291/1‑136 (MQ=255)                                                                                           tgaAGACGGTGCCTGCGACTTTCTTGCCCATGGGCAACTCCTATCGAGTAGGAGGCGGATTCACACCCGCCGTCCTCTCACACCACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGCGGCTAAGCCGGt                                    <  8:13580/136‑1 (MQ=255)                                                                                            gaAGACGGTGCCTGCGACTTTCTTGCCCATGGGCAACTCCTATCGAGTAGGAGGCGGATTCACACCCGCCGTCCTCTCACACCACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGCGGCTAAGCCgg                                     >  1:79616/1‑134 (MQ=255)                                                                                               gACGGTGCCTGCGACTTTCTTGCCCATGGGCAACTCCTATCGAGTAGGAGGCGGATTCACACCCGCCGTCCTCTCACACCACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGCGGCTAAGCCGGTTAAt                                <  8:14506/136‑1 (MQ=255)                                                                                                  ggTGCCTGCGACTTTCTTGCCCATGGGCAACTCCTATCGTGTAGGAGGCGGATTCACACCCGCCGTCCTCTCACACCACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGCGGCTAAGCCGGTTAATCg                              >  3:270722/1‑135 (MQ=255)                                                                                                  ggTGCCTGCGACTTTCTTGCCCATGGGCAACTCCTATCGAGTAGGAGGCGGATTCACACCCGCCGTCCTCTCACACCACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGCGGCTAAGCCGGTTAATCg                              >  3:238864/1‑135 (MQ=255)                                                                                                    tGCCTGCGACTTTCTTGCCCATGGGCAACTCCTATCGTGTAGGAGGCGGATTCACACCCGCCGTCCTCTCACACCACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGCGGCTAAGCCGGTTAATCGTAt                           <  4:270722/136‑1 (MQ=255)                                                                                                    tGCCTGCGACTTTCTTGCCCATGGGCAACTCCTATCGAGTAGGAGGCGGATTCACACCCGCCGTCCTCTCACACCACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGCGGCTAAGCCGGTTAATCGTAt                           <  8:164470/136‑1 (MQ=255)                                                                                                       cTGCGACTTTCTTGCCCATGGGCAACTCCTATCGAGTAGGAGGCGGATTCACACccg                                                                                                       <  6:203321/57‑1 (MQ=255)                                                                                                       cTGCGACTTTCTTGCCCATGGGCAACTCCTATCGAGTAGGAGGCGGATTCACACccg                                                                                                       >  5:203321/1‑57 (MQ=255)                                                                                                       cTGCGACTTTCTTGCCCATGGGCAACTCCTATCGAGTAGGAGGCGGATTCACACCCGCCGTCCTCTCACACCACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGCGGCTAAGCCGGTTAATCGTAt                           >  6:296345/1‑133 (MQ=255)                                                                                                         gCGACTTTCTTGCCCATGGGCAACTCCTATCGAGTAGGAGGCGGATTCACACCCGCCGTCCTCTCACACCACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGCGGCTAAGCCGGTTAATCGTATCCAg                       >  7:312769/1‑135 (MQ=255)                                                                                                            aCTTTCTTGCCCATGGGCAACTCCTATCGAGTAGGAGGCGGATTCACACCCGCCGTCCTCTCACACCACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGCTGCTAAGCCGGGTAATCGTATCCAGTATc                   >  7:240759/1‑136 (MQ=255)                                                                                                             cTTTCTTGCCCATGGGCAACTCCTATCGAGTAGGAGGCGGATTCACACCCGCCGTCCTCTCACACCACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGCGGCTAAGCCGGTTAATCGTATCCAGTATCg                  <  8:111162/136‑1 (MQ=255)                                                                                                              tttCTTGCCCATGGGCTACTCCTCTCGAGTAGGAGGCGGATTCACACCCGCCGTCCTCTCACACCACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGCGGCTAAGCCGGTTAATCGTATCCAGTATCg                  <  6:262555/135‑1 (MQ=255)                                                                                                                tCTTGCCCATGGGCAACTCCTATCGAGTAGGAGGCGGATTCACACCCGCCGTCCTCTCACACCACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGCGGCTAAGCCGGTTAATCGTATCCAGTATCga                 <  4:65282/134‑1 (MQ=255)                                                                                                                 cTTGCCCATGGGCAACTCCTATCGAGTAGGAGGCGGATTCACACCCGCCGTCCTCTCACACCACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGCGGCTAAGCCGGTTAATCGTATCCAGTATCga                 <  1:262908/133‑1 (MQ=255)                                                                                                                 cTTGACCATGTGCAACTCCTATCGAGTAGGAGGCGTATTCACACCCGCCGTCCTCTCACACCACCGTGCGTACGGTTCCGTACACGGCTGTTCAGGTTACGCGGCTAAGCCGGTTAATCGTATCCAGTATCga                 <  1:268442/133‑1 (MQ=255)                                                                                                                             cAACTCCTATCGAGTAGGAGGCGGATTCACACCCGCCGTCCTCTCACACCACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGCGGCTAAGCCGGTTAATCGTATCCAGTATCGAGACCAGCCCGAGCCg  >  7:133160/1‑136 (MQ=37)                                                                                                                                      |                                                                                                                               AGAACCCCGGCGCGATGGATTCGCGTTTGACGTCACTGAGAGGGCATTCAACCCCGCCCGTGACGGTGAACTGGGCGCCATCAGCCTTGATGAAGACGGTGCCTGCGACTTTCTTGCCCATGGGCAACTCCTATCGAGTAGGAGGCGGATTCACACCCGCCGTCCTCTCACACCACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGCGGCTAAGCCGGTTAATCGTATCCAGTATCGAGACCAGCCCGAGCCG  >  ACB122/4383004‑4383263

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.