mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 119,672 | Δ1 bp | coding (169/2664 nt) | aceE → | pyruvate dehydrogenase (acetyl‑transferring), homodimeric type |
| RA | 874,860 | G→A | M221I (ATG→ATA) | yliI → | aldose sugar dehydrogenase YliI |
| RA | 914,207 | A→T | C112S (TGT→AGT) | ybjX ← | VirK/YbjX family protein |
| RA | 1,431,900 | G→A | Q1048* (CAG→TAG) | nifJ ← | pyruvate:ferredoxin (flavodoxin) oxidoreductase |
| RA | 3,443,330 | C→G | R88P (CGT→CCT) | rplV ← | 50S ribosomal protein L22 |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP009273 | 275005–275642 | 286998–286346 | 10705–11994 | 53 [52] | [52] 53 | [BW25113_RS01350]–[BW25113_RS01405] | [BW25113_RS01350],BW25113_RS01350,BW25113_RS23265,BW25113_RS01360,yagB,BW25113_RS26050,yagA,yagE,yagF,yagG,yagH,xynR,argF,argL,BW25113_RS23270,BW25113_RS01405,[BW25113_RS01405] |
| * | * | ÷ | NZ_CP009273 | 387271–388428 | 397243 | 8816–9973 | 54 [52] | [0] 116 | [BW25113_RS01920]–[phoA] | [BW25113_RS01920],BW25113_RS01920,BW25113_RS01930,iprA,ampH,sbmA,yaiW,yaiY,yaiZ,ddlA,BW25113_RS25915,iraP,[phoA] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 270860 | NA (NA) | 76 (0.770) | 67/496 | 0.9 | 80.8% | intergenic (‑68/‑176) | BW25113_RS01325/mmuP | IS5‑like element IS5 family transposase/S‑methylmethionine permease |
| ? | NZ_CP009273 | 651861 = | 18 (0.180) | intergenic (‑437/‑152) | dcuC/pagP | anaerobic C4‑dicarboxylate transporter DcuC/lipid IV(A) palmitoyltransferase PagP | |||||
| * | ? | NZ_CP009273 | 360104 = | 53 (0.540) | 64 (0.650) | 53/496 | 2.0 | 54.2% | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | 55 (0.560) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
| * | ? | NZ_CP009273 | = 388422 | NA (NA) | 114 (1.170) | 97/494 | 0.1 | 100% | intergenic (‑65/‑7) | BW25113_RS01920/BW25113_RS01930 | IS3‑like element IS3 family transposase/autotransporter outer membrane beta‑barrel domain‑containing protein |
| ? | NZ_CP009273 | 397244 = | 0 (0.000) | coding (42/1416 nt) | phoA | alkaline phosphatase | |||||
| * | ? | NZ_CP009273 | = 651864 | 17 (0.170) | 89 (0.910) | 77/496 | 0.5 | 84.0% | intergenic (‑440/‑149) | dcuC/pagP | anaerobic C4‑dicarboxylate transporter DcuC/lipid IV(A) palmitoyltransferase PagP |
| ? | NZ_CP009273 | 683307 = | NA (NA) | intergenic (‑104/+146) | gltI/BW25113_RS03405 | glutamate/aspartate ABC transporter substrate‑binding protein GltI/IS5‑like element IS5 family transposase | |||||
| * | ? | NZ_CP009273 | 2282398 = | NA (NA) | 103 (1.050) | 80/496 | 0.4 | 98.1% | pseudogene (3/2532 nt) | yejO | autotransporter YejO |
| ? | NZ_CP009273 | 3793740 = | 2 (0.020) | coding (586/699 nt) | rfaY | lipopolysaccharide core heptose(II) kinase RfaY | |||||
| * | ? | NZ_CP009273 | = 2283591 | NA (NA) | 114 (1.170) | 87/494 | 0.2 | 99.1% | intergenic (‑67/‑388) | BW25113_RS11435/narP | IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP |
| ? | NZ_CP009273 | = 3793744 | 1 (0.010) | coding (582/699 nt) | rfaY | lipopolysaccharide core heptose(II) kinase RfaY | |||||