mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 874,860 | G→A | M221I (ATG→ATA) | yliI → | aldose sugar dehydrogenase YliI |
| RA | 1,431,900 | G→A | Q1048* (CAG→TAG) | nifJ ← | pyruvate:ferredoxin (flavodoxin) oxidoreductase |
| RA | 4,322,687 | G→T | R138S (CGC→AGC) | pmrB ← | two‑component system sensor histidine kinase PmrB |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP009273 | 274990–275642 | 286996–286345 | 10704–12007 | 59 [57] | [57] 58 | [BW25113_RS01350]–[BW25113_RS01405] | [BW25113_RS01350],BW25113_RS01350,BW25113_RS23265,BW25113_RS01360,yagB,BW25113_RS26050,yagA,yagE,yagF,yagG,yagH,xynR,argF,argL,BW25113_RS23270,BW25113_RS01405,[BW25113_RS01405] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 360104 = | 50 (0.460) | 59 (0.550) | 53/494 | 2.7 | 54.6% | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | 48 (0.440) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
| * | ? | NZ_CP009273 | 1203246 = | 36 (0.330) | 67 (0.660) | 59/462 | 1.6 | 67.5% | coding (290/630 nt) | BW25113_RS05990 | protein StfP |
| ? | NZ_CP009273 | 1205075 = | 31 (0.310) | coding (40/540 nt) | BW25113_RS06005 | phage tail protein | |||||
| * | ? | NZ_CP009273 | = 1203261 | 36 (0.330) | 80 (0.790) | 73/462 | 0.7 | 71.2% | coding (305/630 nt) | BW25113_RS05990 | protein StfP |
| ? | NZ_CP009273 | = 1205058 | 31 (0.310) | coding (57/540 nt) | BW25113_RS06005 | phage tail protein | |||||
| * | ? | NZ_CP009273 | 2163653 = | NA (NA) | 99 (0.920) | 91/490 | 0.3 | 98.0% | intergenic (‑3/‑64) | BW25113_RS10890/BW25113_RS10900 | DeoR/GlpR family DNA‑binding transcription regulator/IS3‑like element IS3 family transposase |
| ? | NZ_CP009273 | 2458228 = | 2 (0.020) | coding (259/756 nt) | mlaA | phospholipid‑binding lipoprotein MlaA | |||||
| * | ? | NZ_CP009273 | = 2164909 | NA (NA) | 129 (1.200) | 106/494 | 0.1 | 100% | pseudogene (300/300 nt) | BW25113_RS10905 | DeoR family transcriptional regulator |
| ? | NZ_CP009273 | = 2458231 | 0 (0.000) | coding (256/756 nt) | mlaA | phospholipid‑binding lipoprotein MlaA | |||||
| * | ? | NZ_CP009273 | 2277591 = | 1 (0.010) | 125 (1.160) | 91/494 | 0.3 | 99.2% | intergenic (‑165/‑17) | yejK/yejL | nucleoid‑associated protein YejK/YejL family protein |
| ? | NZ_CP009273 | 2282398 = | NA (NA) | pseudogene (3/2532 nt) | yejO | autotransporter YejO | |||||
| * | ? | NZ_CP009273 | = 2277594 | 2 (0.020) | 148 (1.370) | 116/494 | 0.0 | 98.7% | intergenic (‑168/‑14) | yejK/yejL | nucleoid‑associated protein YejK/YejL family protein |
| ? | NZ_CP009273 | = 2283592 | NA (NA) | intergenic (‑68/‑387) | BW25113_RS11435/narP | IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP | |||||