mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 874,860 | G→A | M221I (ATG→ATA) | yliI → | aldose sugar dehydrogenase YliI |
| RA | 1,431,900 | G→A | Q1048* (CAG→TAG) | nifJ ← | pyruvate:ferredoxin (flavodoxin) oxidoreductase |
| RA | 3,336,711 | G→T | E173* (GAG→TAG) | lptC → | LPS export ABC transporter periplasmic protein LptC |
| JC | 3,962,943 | (CAGC)2→3 | coding (553/1047 nt) | wzzE → | ECA polysaccharide chain length modulation protein |
| RA | 3,965,993 | Δ1 bp | coding (112/1068 nt) | rffG → | dTDP‑glucose 4,6‑dehydratase |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 360104 = | 46 (0.630) | 44 (0.610) | 36/494 | 2.4 | 49.7% | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | 43 (0.590) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
| * | ? | NZ_CP009273 | 1203246 = | 6 (0.080) | 66 (0.970) | 65/462 | 0.2 | 90.0% | coding (290/630 nt) | BW25113_RS05990 | protein StfP |
| ? | NZ_CP009273 | 1205075 = | 9 (0.130) | coding (40/540 nt) | BW25113_RS06005 | phage tail protein | |||||
| * | ? | NZ_CP009273 | = 1203261 | 6 (0.080) | 53 (0.780) | 46/462 | 1.0 | 87.9% | coding (305/630 nt) | BW25113_RS05990 | protein StfP |
| ? | NZ_CP009273 | = 1205058 | 9 (0.130) | coding (57/540 nt) | BW25113_RS06005 | phage tail protein | |||||