mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 874,860 | G→A | M221I (ATG→ATA) | yliI → | aldose sugar dehydrogenase YliI |
| RA | 1,431,900 | G→A | Q1048* (CAG→TAG) | nifJ ← | pyruvate:ferredoxin (flavodoxin) oxidoreductase |
| RA | 1,912,168 | G→A | M134I (ATG→ATA) | yebT → | lipid‑binding membrane homeostasis protein YebT |
| RA | 2,277,556 | (A)8→7 | intergenic (‑130/‑52) | yejK ← / → yejL | nucleoid‑associated protein YejK/YejL family protein |
| RA | 2,458,425 | Δ1 bp | coding (62/756 nt) | mlaA ← | phospholipid‑binding lipoprotein MlaA |
| RA | 4,322,729 | C→T | E124K (GAA→AAA) | pmrB ← | two‑component system sensor histidine kinase PmrB |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 360104 = | 46 (0.600) | 55 (0.710) | 48/494 | 1.3 | 53.7% | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | 49 (0.630) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
| * | ? | NZ_CP009273 | 1203246 = | 15 (0.190) | 50 (0.690) | 47/462 | 1.1 | 85.5% | coding (290/630 nt) | BW25113_RS05990 | protein StfP |
| ? | NZ_CP009273 | 1205075 = | 3 (0.040) | coding (40/540 nt) | BW25113_RS06005 | phage tail protein | |||||
| * | ? | NZ_CP009273 | = 1203261 | 15 (0.190) | 60 (0.830) | 54/462 | 0.6 | 87.6% | coding (305/630 nt) | BW25113_RS05990 | protein StfP |
| ? | NZ_CP009273 | = 1205058 | 3 (0.040) | coding (57/540 nt) | BW25113_RS06005 | phage tail protein | |||||
| * | ? | NZ_CP009273 | 1748707 = | 1 (0.010) | 102 (1.320) | 76/494 | 0.1 | 99.0% | coding (28/627 nt) | ydhY | ferredoxin‑like protein |
| ? | NZ_CP009273 | 2095230 = | NA (NA) | pseudogene (1/354 nt) | wbbL | N‑acetylglucosaminyl‑diphospho‑decaprenol L‑rhamnosyltransferase WbbL | |||||
| * | ? | NZ_CP009273 | = 1748710 | 1 (0.010) | 100 (1.290) | 74/494 | 0.1 | 99.0% | coding (25/627 nt) | ydhY | ferredoxin‑like protein |
| ? | NZ_CP009273 | = 2283592 | NA (NA) | intergenic (‑68/‑387) | BW25113_RS11435/narP | IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP | |||||