mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 825,822 | G→A | A93V (GCT→GTT) | cecR ← | DNA‑binding transcriptional regulator CecR |
| RA | 874,860 | G→A | M221I (ATG→ATA) | yliI → | aldose sugar dehydrogenase YliI |
| RA | 1,431,900 | G→A | Q1048* (CAG→TAG) | nifJ ← | pyruvate:ferredoxin (flavodoxin) oxidoreductase |
| RA | 1,556,103 | C→G | V212V (GTG→GTC) | ddpA ← | ABC transporter substrate‑binding protein |
| JC | 3,965,402 | (CCTGGC)2→3 | coding (783/1263 nt) | wecC → | UDP‑N‑acetyl‑D‑mannosamine dehydrogenase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP009273 | 274988–275640 | 287004–286345 | 10706–12017 | 57 [56] | [56] 57 | [BW25113_RS01350]–[BW25113_RS01405] | [BW25113_RS01350],BW25113_RS01350,BW25113_RS23265,BW25113_RS01360,yagB,BW25113_RS26050,yagA,yagE,yagF,yagG,yagH,xynR,argF,argL,BW25113_RS23270,BW25113_RS01405,[BW25113_RS01405] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 360104 = | 50 (0.490) | 60 (0.590) | 51/496 | 2.7 | 53.8% | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | 53 (0.520) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
| * | ? | NZ_CP009273 | 1203246 = | 18 (0.180) | 80 (0.850) | 72/464 | 0.6 | 81.3% | coding (290/630 nt) | BW25113_RS05990 | protein StfP |
| ? | NZ_CP009273 | 1205075 = | 20 (0.210) | coding (40/540 nt) | BW25113_RS06005 | phage tail protein | |||||
| * | ? | NZ_CP009273 | = 1203261 | 18 (0.180) | 75 (0.790) | 67/464 | 0.8 | 80.3% | coding (305/630 nt) | BW25113_RS05990 | protein StfP |
| ? | NZ_CP009273 | = 1205058 | 20 (0.210) | coding (57/540 nt) | BW25113_RS06005 | phage tail protein | |||||
| * | ? | NZ_CP009273 | 2277591 = | 6 (0.060) | 120 (1.190) | 95/496 | 0.1 | 95.2% | intergenic (‑165/‑17) | yejK/yejL | nucleoid‑associated protein YejK/YejL family protein |
| ? | NZ_CP009273 | 2282398 = | NA (NA) | pseudogene (3/2532 nt) | yejO | autotransporter YejO | |||||
| * | ? | NZ_CP009273 | = 2277594 | 1 (0.010) | 94 (0.930) | 72/496 | 0.8 | 99.0% | intergenic (‑168/‑14) | yejK/yejL | nucleoid‑associated protein YejK/YejL family protein |
| ? | NZ_CP009273 | = 2283592 | NA (NA) | intergenic (‑68/‑387) | BW25113_RS11435/narP | IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP | |||||