mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 197,270 | T→C | F101S (TTT→TCT) | skp → | molecular chaperone Skp |
| RA | 248,997 | T→C | F70F (TTT→TTC) | yafO → | type II toxin‑antitoxin system mRNA interferase toxin YafO |
| RA | 791,492 | C→T | P59S (CCC→TCC) | modB → | molybdate ABC transporter permease subunit |
| RA | 874,860 | G→A | M221I (ATG→ATA) | yliI → | aldose sugar dehydrogenase YliI |
| RA | 1,431,900 | G→A | Q1048* (CAG→TAG) | nifJ ← | pyruvate:ferredoxin (flavodoxin) oxidoreductase |
| RA | 1,446,404 | A→G | V499A (GTT→GCT) | paaZ ← | phenylacetic acid degradation bifunctional protein PaaZ |
| RA | 1,865,003 | C→A | T121K (ACA→AAA) | cdgI → | GGDEF domain‑containing protein |
| RA | 2,961,644 | G→T | Y50* (TAC→TAA) | ptsP ← | phosphoenolpyruvate‑‑protein phosphotransferase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP009273 | 387326–388421 | 397243 | 8823–9918 | 17 [16] | [0] 54 | [BW25113_RS01920]–[phoA] | [BW25113_RS01920],BW25113_RS01920,BW25113_RS01930,iprA,ampH,sbmA,yaiW,yaiY,yaiZ,ddlA,BW25113_RS25915,iraP,[phoA] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 360104 = | 27 (0.450) | 29 (0.490) | 27/496 | 1.7 | 46.4% | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | 40 (0.670) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
| * | ? | NZ_CP009273 | = 388422 | NA (NA) | 54 (0.910) | 50/494 | 0.3 | 100% | intergenic (‑65/‑7) | BW25113_RS01920/BW25113_RS01930 | IS3‑like element IS3 family transposase/autotransporter outer membrane beta‑barrel domain‑containing protein |
| ? | NZ_CP009273 | 397244 = | 0 (0.000) | coding (42/1416 nt) | phoA | alkaline phosphatase | |||||
| * | ? | NZ_CP009273 | = 1090958 | NA (NA) | 77 (1.300) | 66/494 | 0.1 | 98.7% | intergenic (‑65/‑3) | BW25113_RS05345/BW25113_RS05355 | IS3‑like element IS3 family transposase/ACP S‑malonyltransferase |
| ? | NZ_CP009273 | = 3794169 | 1 (0.020) | coding (157/699 nt) | rfaY | lipopolysaccharide core heptose(II) kinase RfaY | |||||
| * | ? | NZ_CP009273 | = 2164908 | NA (NA) | 69 (1.170) | 61/494 | 0.1 | 100% | intergenic (+29/+1) | BW25113_RS10900/BW25113_RS10905 | IS3‑like element IS3 family transposase/DeoR family transcriptional regulator |
| ? | NZ_CP009273 | 3794166 = | 0 (0.000) | coding (160/699 nt) | rfaY | lipopolysaccharide core heptose(II) kinase RfaY | |||||