mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 874,860 | G→A | M221I (ATG→ATA) | yliI → | aldose sugar dehydrogenase YliI |
| RA | 1,431,900 | G→A | Q1048* (CAG→TAG) | nifJ ← | pyruvate:ferredoxin (flavodoxin) oxidoreductase |
| MC JC | 4,094,535 | Δ96 bp | coding (274‑369/1374 nt) | cpxA ← | envelope stress sensor histidine kinase CpxA |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP009273 | 275063–275643 | 286904–286347 | 10705–11842 | 17 [16] | [16] 17 | [BW25113_RS01350]–[BW25113_RS01405] | [BW25113_RS01350],BW25113_RS01350,BW25113_RS23265,BW25113_RS01360,yagB,BW25113_RS26050,yagA,yagE,yagF,yagG,yagH,xynR,argF,argL,BW25113_RS23270,BW25113_RS01405,[BW25113_RS01405] |
| * | * | ÷ | NZ_CP009273 | 3936952–3937364 | 3938848–3937421 | 58–1897 | 17 [16] | [16] 17 | [BW25113_RS19530] | [BW25113_RS19530] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 19796 = | NA (NA) | 84 (1.290) | 76/496 | 0.0 | 98.8% | intergenic (‑1/+15) | BW25113_RS25960/BW25113_RS00100 | fimbrial family protein/IS1‑like element IS1A family transposase |
| ? | NZ_CP009273 | 3794218 = | 1 (0.020) | coding (108/699 nt) | rfaY | lipopolysaccharide core heptose(II) kinase RfaY | |||||
| * | ? | NZ_CP009273 | 360104 = | 25 (0.390) | 29 (0.450) | 27/496 | 2.0 | 47.9% | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | 38 (0.590) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
| * | ? | NZ_CP009273 | 1203246 = | 11 (0.170) | 31 (0.510) | 30/464 | 1.5 | 75.3% | coding (290/630 nt) | BW25113_RS05990 | protein StfP |
| ? | NZ_CP009273 | 1205075 = | 10 (0.160) | coding (40/540 nt) | BW25113_RS06005 | phage tail protein | |||||
| * | ? | NZ_CP009273 | = 1203261 | 11 (0.170) | 28 (0.460) | 27/464 | 1.8 | 73.4% | coding (305/630 nt) | BW25113_RS05990 | protein StfP |
| ? | NZ_CP009273 | = 1205058 | 10 (0.160) | coding (57/540 nt) | BW25113_RS06005 | phage tail protein | |||||
| * | ? | NZ_CP009273 | 2282399 = | NA (NA) | 81 (1.250) | 62/494 | 0.2 | 97.6% | pseudogene (2/2532 nt) | yejO | autotransporter YejO |
| ? | NZ_CP009273 | 3751492 = | 2 (0.030) | coding (1730/1845 nt) | selB | selenocysteine‑specific translation elongation factor | |||||
| * | ? | NZ_CP009273 | = 2283591 | NA (NA) | 140 (2.170) | 119/494 | 0.0 | 99.3% | intergenic (‑67/‑388) | BW25113_RS11435/narP | IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP |
| ? | NZ_CP009273 | = 3751497 | 1 (0.020) | coding (1725/1845 nt) | selB | selenocysteine‑specific translation elongation factor | |||||
| * | ? | NZ_CP009273 | = 3206924 | 53 (0.820) | 68 (1.090) | 63/478 | 0.1 | 58.6% | coding (519/1842 nt) | rpoD | RNA polymerase sigma factor RpoD |
| ? | NZ_CP009273 | 3207006 = | 45 (0.720) | coding (601/1842 nt) | rpoD | RNA polymerase sigma factor RpoD | |||||
| * | ? | NZ_CP009273 | 3576788 = | NA (NA) | 77 (1.190) | 73/496 | 0.1 | 100% | coding (391/417 nt) | BW25113_RS17825 | YrhA family protein |
| ? | NZ_CP009273 | = 3794226 | 0 (0.000) | coding (100/699 nt) | rfaY | lipopolysaccharide core heptose(II) kinase RfaY | |||||