Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NZ_CP009273	1,985,958	Δ3 bp	coding (339‑341/549 nt)	pgsA ←	CDP‑diacylglycerol‑‑glycerol‑3‑phosphate 3‑phosphatidyltransferase

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1985958	1985960	3	56 [0]	[0] 54	pgsA	CDP‑diacylglycerol‑‑glycerol‑3‑phosphate 3‑phosphatidyltransferase

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	= 1985957	0 (0.000)	54 (0.590)	51/494	1.0	100%	coding (342/549 nt)	pgsA	CDP‑diacylglycerol‑‑glycerol‑3‑phosphate 3‑phosphatidyltransferase
	?	NZ_CP009273	1985961 =	0 (0.000)					coding (338/549 nt)	pgsA	CDP‑diacylglycerol‑‑glycerol‑3‑phosphate 3‑phosphatidyltransferase

TTTGATCGTTTGCTGAAAATTACGCCGAAACGATCACTGATCAAGCAAATCTGCACGCGCAGCGCTCAAATATTGCAACATTGACCACAGAGTCAGTACCGCAGCCACAAAGAAAAGTGCAATACCGGCGTACTCAACCCAAATGTTCGGACGCCACAGCAGCCATGCCAACGCCACCATCTGGGCAGTGGTTTTCACTTTCCCAATCCAGGAGACGGCCACGCTACTGCGTTTACCCAACTCCGCCATCCATTCGCGTAGCGCAGAAATAATAATTTCACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACCAGCTGTGATAATGCTCGGTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTACTCTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCG  >  NZ_CP009273/1985717‑1986207                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                       acttttgatcgtttgctgaaaattacgccgaaacgatcactgatcaagcaaatctgcacgcgcagcgctcaaatattgcaacattgaccacagagtcagtaccgcagccacaaagaaaagtgcaataccggcgtactcaacccaaatgttcggacgccacagcagccatgccaacgccaccatctgggcagtggttttcactttcccaatccaggagacggccacgctactgcgtttacccaacGccatc                                                                                                                                                                                                                                                   >  2:237714‑M2/245‑250 (MQ=255)        atcgttgtctgaaaattacgccgaaacgatcactgatcaagcaaatctgcacgcgcagcgctcaaatattgcaacatggaccgcagagtcagtaccgcagccacaaagaaaagtgcaataccggcgtactcaacccaaatgttcggacgccacagcagccatgccaacgccaccatctgggcagtggttttcactttcccaatccaggagacggccacgctactgcgtttacccaacGCCATCCATTcgc                                                                                                                                                                                                                                            <  2:117058‑M2/13‑1 (MQ=255)           gtttgctgaaaattacgccgaaacgatcactgatcaagcaaatctgcacgcgcagcgctcaaatattgcaacattgaccacagagtcagtaccgcagccacaaagaaaagtgcaataccggcgtactcaacccaaatgttcggacgccacagcagccatgccaacgccaccatctgggcagtggttttcactttcccaatccaggagacggccacgctactgcgtttacccaacGCCATCCATTCGCGt                                                                                                                                                                                                                                          <  2:213209‑M2/15‑1 (MQ=255)                      attacgccgaaacgatcactgatcaagcaaatctgcacgcgcagcgctcaaatattgcaacattgaccacagagtcagtaccgcagccacaaagaaaagtgcaataccggcgtactcaacccaaatgttcggacgccacagcagccatgccaacgccaccatctgggcagtggttttcactttcccaatccaggagacggccacgctactgcgtttacccaacGCCATCCATTCGCGTAGCGCAGAaata                                                                                                                                                                                                                              <  1:14546‑M2/27‑1 (MQ=255)                        tacgccgaaacgatcactgatcaagcaaatctgcacgcgcagcgctcaaatattgcaacattgaccacagagtcagtaccgcagccacaacgaaaagtgcaataccggcgtactcaacccaaatgttcggacgccacagcagccatgccaacgccaccatctgggcagtggttttcactttcccaatccaggagacggccacgctactgcgtttacccaacGCCATCCATTCGAGTCGCGCAGGaataa                                                                                                                                                                                                                             >  2:508539‑M2/222‑249 (MQ=255)                         acgccgaaacgatcactgatcaagcaaatctgcacgcgcagcgctcaaatattgcaacattgaccacagagtcagtaccgcagccacaaagaaaagtgcaataccggcgtactcaacccaaatgttcggacgccacagcagccatgccaacgccaccatctgggcagtggttttcactttcccaatccaggagacggccacgctactgcgtttacccaacGCCATCCATTCGTGTAGCGCAGAaataat                                                                                                                                                                                                                            >  1:146737‑M2/221‑249 (MQ=255)                             cgaaacgatcactgatcaagcaaatctgcacgcgcagcgctcaaatattgcaacattgaccacagagtcagtaccgcagccacaaagaaaagtgcaataccggcgtactcaacccaaatgttcggacgccacagcagccatgccaacgccaccatctgggcagtggttttcactttcccaatccaggatacggccacgctactgcgtttacccaacGCCATCCATTCGCGTAGCGCAGAAATAATAAttt                                                                                                                                                                                                                       <  1:767571‑M2/34‑1 (MQ=255)                                aacgatcactgatcaagcaaatctgcacgcgcagcgctcaaatattgcaacattgaccacagagtcagtaccgcagccacaaagaaaagtgcaataccggcgtactcaacccaaatgttcggacgccacagcagccatgccaacgccaccatctgggcagtggttttcactttcccaatccaggagacggccacgctactgcgtttacccaacGCCATCCATTCGCGTAGCGCAGAAATAATAATTTCAc                                                                                                                                                                                                                    <  1:455282‑M2/37‑1 (MQ=255)                                 acgatcactgatcaagcaaatctgcacgcgcagcgctcaaatattgcaacattgaccacagagtcagtaccgcagccacaaagaaaagtgcaataccggcgtactcaacccaaatgttcggacgccacagcagccatgccaacgccaccatctgggcagtggttttcactttcccaatccaggagacggccacgctactgcgtttacccaacGCCATCCATTCGCGTAGCGCAGAAATAATAATTTCACg                                                                                                                                                                                                                   >  1:548023‑M2/213‑250 (MQ=255)                                   gatcactgatcaaacaaatctgcacgcgcagcgctcaaatattgcaacattgaccacagagtcagtaccgcagccacaaagaaaagtgcaataccggcgtactcaacccaaatgttcggacgccacagcagccatgccaacgccaccatctgggcagtggttttcactttcccaatccaggagacggccacgctactgcgtttacccaacGCCATCCATTCGCGTAGCGCAGAAATAATAATTTCACggg                                                                                                                                                                                                                 <  2:690816‑M2/40‑1 (MQ=255)                                    agacctgatcaagcaaatctgcacgcgcagcgctcaaatattgcaacattgcccacagagtcagtaccgcagccacaaataaaagtgcaataccggcgtactcaacccaaatgttcggacgccacagcagccatgccaacgccaccatctgggcagtggttttcactttcccaatccaggagacggccacgctactgcgtttacccaacGCCATCCATTCGCGTAGCGCAGAAATAATAATTTCACGGGc                                                                                                                                                                                                                <  2:726035‑M2/41‑1 (MQ=255)                                              aagcaaatctgcacgcgccgcgctcaaatagtgcaaccatgaccccagagtcagtaccgcagccacaaagaaaagtgcaataccggcgttctcaacccaaatgttcggacgccacagcagccatgccaacgccaccatctgggcagtggttttcactttcccaatccaggagacggccacgcttctgcgtttacccaacGCCATCCATTCGCGTAGCGCAGAAATAATAATGTCACGGGCGATCTTCGtt                                                                                                                                                                                                      <  2:846689‑M2/51‑1 (MQ=255)                                                 caaatctgcacgcgcagcgctcaaatattgcaacattgaccacagagtcagtaccgcagccacaaagaaaagtgcaataccggcgtactcaacccaaatgttcggacgccacagcagccatgccaacgccaccatctgggcagtggttttcactttcccaatccaggagacggccacgctactgcgtttacccaacGCCATCCATTCGCGTAGCGCAGAAATAATAATTTCACGGGCGATCATCGTTgcc                                                                                                                                                                                                   >  2:619062‑M2/197‑250 (MQ=255)                                                    atctgcacgcgcagcgctcaaatattgcaacattgaccacagagtcagtaccgcagccacaaagaaaagtgcaataccggcgtactcaacccaaatgttcggacgccacagcagccatgccaacgccaccatctgggcagtggttttcactttcccaatccaggagacggccacgctactgcgtttacccaacGCCATCCATTCGCGTAGCGCAGAAATAATAATTTCACGGGCGATCATCGTTgccgcc                                                                                                                                                                                                >  1:230263‑M2/194‑250 (MQ=255)                                                         cacgcgcagcgctcaaatattgcaacattgaccacagagtcagtaccgcagccacaaagaaaagtgcaataccggcgtactcaacccaaatgttcggacgccacagcagccatgccaacgccaccatctgggcagtggttttcactttcccaatccaggagacggccacgctactgcgtttacccaacGCCATCCATTCGCGTAGCGCAGAAATAATAATTTCACGGGCGATCATCGTTGCCGCCGGTaa                                                                                                                                                                                           >  1:150321‑M2/189‑250 (MQ=255)                                                          acgcgcagcgctcaaatattgcaacattgaccacagagtcagtaccgcagccacaaagaaaagtgcaataccggcgtactcaacccaaatgttcggacgccacagcagccatgccaacgccaccatctgggcagtggttttcactttcccaatccaggagacggccacgctactgcgtttacccaacGCCATCCATTCGCGTAGCGCAGAAATAATAATTTCACGGGCGATCATCGTTGCCGCCGGTAAt                                                                                                                                                                                          >  1:108796‑M2/188‑250 (MQ=255)                                                            gcgcagcgctcaaatattgcaacattgaccacagagtcagtaccgcagccacaaagaaaagtgcaataccggcgtactcaacccaaatgttcggacgccacagcagccatgccaacgccaccatctgggcagtggttttcactttcccaatccaggagacggccacgctactgcgtttacccaacGCCATCCATTCGCGTAGCGCAGAAATAATAATTTCACGGGCGATCATCGTTGCCGCCGGTAATGt                                                                                                                                                                                        <  1:454792‑M2/65‑1 (MQ=255)                                                             cgcagcgctcaaatattgcaacattgaccacagagtcagtaccgcagccacaaagaaaagtgcaataccggcgtactcaacccaaatgttcggacgccacagcagccatgccaacgccaccatctgggcagtggttttcactttcccaatccaggagacggccacgctactgcgtttacccaacGCCATCCATTCGCGTAGTGCAGAAATAATAATTTCACGGGCGATCATCGTTGCCGCCGGTAATGTc                                                                                                                                                                                       <  1:82602‑M2/66‑1 (MQ=255)                                                              gcagcgctaaaatattaaaacattgaccacaggaaaagtaccgcagccccaaaaaaaagtgcaatgccggcgtactcaacccatatgttcggacgccacagcagccatgccaacgccaccaactaggcagtagttttcactttcccaatccaggagacggccacgctactgcttttacccaacACCATCCATTCGCGTAGCGCAGAAAAAATAATTTCACAAGGGATCATCGTTGCCGCCTGTAATGTca                                                                                                                                                                                      <  2:733987‑M2/67‑1 (MQ=255)                                                                          tattgcaacattgaccacagagtcagtaccgcagccacaaagaaaagtgcaataccggcgtactcaacccaaatgttcggacgccacagcagccatgccaacgccaccatctgggcagtggttttcactttcccaatccaggagacggccacgctactgcgtttacccaacGCCATCCATTCGCGTAGCGCAGAAATAATAATTTCACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACCAGCtgt                                                                                                                                                                          >  2:479063‑M2/172‑250 (MQ=255)                                                                                 acattgaccacagagtcagtaccgcagccacaaagaaaagtgcaataccggcgtactcaacccaaatgttcggacgccacagcagccatgccaacgccaccatctgggcagtggttttcactttcccaatccaggagacggccacgctactgcgtttacccaacGCCATCCATTCGCGTAGCGCAGAAATAATAATTTCACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACCAGCTGTGATAATg                                                                                                                                                                   >  2:369232‑M2/165‑250 (MQ=255)                                                                                  cattgaccacagagtcagtaccgcagccacaaagaaaagtgcaataccggcgtactcaacccaaatgttcggacgccacagcagccatgccaacgccaccatctgggcagtggttttcactttcccaatccaggagacggccacgctactgcgtttacccaacGCCATCCATTCGCGTAGCGCAGAAATAATAATTTCACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACCAGCTGTGATAATGc                                                                                                                                                                  <  1:32769‑M2/87‑1 (MQ=255)                                                                                       accacagagtcagtaccgcagccacaaagaaaagtgcaataccggcgtactcaacccaaatgttcggacgccacagcagccatgccaacgccaccatctgggcagtggttttcactttcccaatccaggagacggccacgctactgcgtttacccaacGCCATCCATTCGCGTAGCGCAGAAATAATAATTTCACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACCAGCTGTGATAATGCTCGGt                                                                                                                                                             >  2:309764‑M2/159‑250 (MQ=255)                                                                                            agagtcagtaccgcagccacaaagaaaagtgcaataccggcgtactcaacccaaatgttcggacgccacagcagccatgccaacgccaccatctgggcagtggttttcactttcccaatccaggagacggccacgctactgcgtttacccaacGCCATCCATTCGCGTAGCGCAGAAATAATAATTTCACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACCAGCTGTGATAATGCTCGGTTAc                                                                                                                                                          >  1:354836‑M2/154‑248 (MQ=255)                                                                                              agtcagtaccgcagccacaaagaaaagtgcaataccggcgtactcaacccaaatgttcggacgccacagcagccatgccaacgccaccatctgggcagtggttttcactttcccaatccaggagacggccacgctactgcgtttacccaacGCCATCCATTCGCGTAGCGCAGAAATAATAATTTCACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACCAGCTGTGATAATGCTCGGTTACCAg                                                                                                                                                       >  1:887485‑M2/152‑249 (MQ=255)                                                                                                tcagtaccgcagccacaaagaaaagtgcaataccggcgtactcaacccaaatgttcggacgccacagcagccatgccaacgccaccatctgggcagtggttttcactttcccaatccaggagacggccacgctactgcgtttacccaacGCCATCCATTCGCGTAGCGCAGAAATAATAATTTCACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACCAGCTGTGATAATGCTCGGTTACCAGCAc                                                                                                                                                    >  1:88993‑M2/150‑250 (MQ=255)                                                                                                      ccgcagccacaaagaaaagtgcaataccggcgtactcaacccaaatgttcggacgccacagcagccatgccaacgccaccatctgggcagtggttttcactttcccaatccaggagacggccacgctactgcgtttacccaacGCCATCCATTCGCGTAGCGCAGAAATAATAATTTCACGGGCGATCATCGTTGCCGCCGGTAATGTCGCCCACCAGCTGTGATAATGCTCGGTTACCAGCACCATGGc                                                                                                                                              <  1:212833‑M2/107‑1 (MQ=255)                                                                                                      ccgcagccacaaagaaaagtgcaataccggcgtactcaacccaaatgttcggacgccacagcagccatgccaacgccaccatctgggcagtggttttcactttcccaatccaggagacggccacgctactgcgtttacccaacGCCATCCATTCGCGTAGCGCAGAAATAATAATTTCACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACCAGCTGTGATAATGCTCGGTTACCAGCACCATGGc                                                                                                                                              <  1:294080‑M2/107‑1 (MQ=255)                                                                                                                                        cccaacccaaattgtcggacgccacagcagccatgccaacgccaccatctgggcagtggttttcactttcccaatccaggagacggccacgctactgcgtttacccaacGCCATCCATTCGCGTAGCGCAGAAATAATAATTTCACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACCAGCTGTGATAATGCTCGGTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCa                                                                                                            <  2:740192‑M2/141‑1 (MQ=255)                                                                                                                                               caaatgttcggacgccacagcagccatgccaacgccaccatctgggcagtggttttcactttcccaatccaggggacggccacgctactgcgtttacccaacGCCATCCATTCGCGTAGCGCAGAAATAATAATTTCACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACCAGCTGTGATAATGCTCGGTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAg                                                                                                     <  2:787720‑M2/148‑1 (MQ=255)                                                                                                                                                                     gccatgccaacgccaccatctgggcagtggttttcactttcccaatccaggagacggccacgctactgcgtttacccaacGCCATCCATTCGCGTAGCGCAGAAATAATAATTTCACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACCAGCTGTGATAATGCTCGGTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTACTCTGGtt                                                                               <  2:623135‑M2/170‑1 (MQ=255)                                                                                                                                                                     gccatgccaacgccaccatctgggcagtggttttcactttcccaatccaggagacggccacgctactgcgtttacccaacGCCATCCATTCGCGTAGCGCAGAAATAATAATTTCACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACCAGCTGTGATAATGCTCGGTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTACTCTGCtt                                                                               >  2:385396‑M2/81‑250 (MQ=255)                                                                                                                                                                       catgccaacgccaccatctgggcagtggttttcactttcccaatccaggagacggccacgctactgcgtttacccaacGCCATCCATTCGCGTAGCGCAGAAATAATAATTTCACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACCAGCTGTGATAATGCTCGGTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTACTCTGGTTc                                                                              >  1:659589‑M2/79‑249 (MQ=255)                                                                                                                                                                            caacgccaccatctgggcagtggttttcactttcccaatccaggagacggccacgctactgcgtttacccaacGCCATCCATTCGCGTAGCGCAGAAATAATAATTTCACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACCAGCTGTGATAATGCTCGGTTACCAGCACCATGGCGCTAGCCCCGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTACTCTGGCACCAgcgg                                                                        >  2:159532‑M2/74‑250 (MQ=255)                                                                                                                                                                             aacgccaccatctgggcagtggttttcactttcccaatccaggagacggccacgctactgcgtttacccaacGCCATCCATTCGCGTAGCGCAGAAATAATAATTTCACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACCAGCTGTGATAATGCTCGGTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTACTCTGGTTCCAgcggc                                                                       >  1:629696‑M2/73‑250 (MQ=255)                                                                                                                                                                                    ccacctgggcagtgggttgcacttgcccaatccaggagacgccacggctactgcgtttacccaacACAATCCATTCGCGTAGCGCAGAAATAATAATGTCACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACCAGCTGTGATAATGCTCGGTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTACTCTGGTTCCAGCGGCGTGCCAg                                                                <  2:14070‑M2/185‑1 (MQ=255)                                                                                                                                                                                      atctgggcagtggttttcactttcccaatccaggagacggccacgctactgcgtttacccaacGCCATCCATTCGCGTAGCGCAGAAATAATAATTTCACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACCAGCTGTGATAATGCTCGGTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTACTCTGGTTCCAGCGGCGTGCCAGa                                                               >  2:536812‑M2/64‑249 (MQ=255)                                                                                                                                                                                       tctgggcagtggttttcactttcccaatccaggagacggccacgctactgcgtttacccaacGCCATCCATTCGCGTAGCGCAGAAATAATAATTTCACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACCAGCTGTGATAATGCTCGGTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTACTCTGGTTCCAGCGGCGTGCCAGaa                                                              >  1:876601‑M2/63‑249 (MQ=255)                                                                                                                                                                                               gtggttttcactttcccaatccaggagacggccacgctactgcgtttacccaacGCCATCCATTCGCGTAGCGCAGAAATAATAATTTCACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACCAGCTGTGATAATGCTCGGTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTACTCTGGTTCCAGCGGCGTGCCAGAAAACCATCg                                                      >  1:507904‑M2/55‑249 (MQ=255)                                                                                                                                                                                                    tttcactttcccaatccaggagacggccacgctactgcgtttacccaacGCCATCCATTCGCGTAGCGCAGAAATAATAATTTCACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACCAGCTGTGATAATGCTCGGTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTACTCTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACcag                                                >  2:142478‑M2/50‑250 (MQ=255)                                                                                                                                                                                                     ttcactttcccaatccaggagacggccacgctactgcgtttacccaacGCCATCCATTCGCGTAGCGCAGAAATAATAATTTCACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACCAGCTGTGATAATGCTCGGTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTACTCTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACcag                                                <  1:170397‑M2/201‑1 (MQ=255)                                                                                                                                                                                                        actttcccaatccaggagacggccacgctactgcgtttacccaacGCCATCCATTCGCGTAGCGCAGAAATAATAATTTCACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACCAGCTGTGATAATGCTCGGTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTACTCTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACcagtcag                                            >  2:550655‑M2/46‑250 (MQ=255)                                                                                                                                                                                                            acccaaacccgtagacagccccgctactccgtttacccaacGCCATCCATTCGCGTAGCGCAGAAATAATAATTTCACGGGCGATCATAGTTGCCGCGGGTAATGTCACCCACAAGCTGTGATAATGCTCGGTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTACTCTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAgtcagtca                                         <  2:337653‑M2/208‑1 (MQ=255)                                                                                                                                                                                                             cccaactcatgagccggccccgctactgcgtttacccagcGCGTTCCATTCGCGTAGCGCAGAAATAATAATTTCACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACCAGCTGTGATAATGCTCGGTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTACTCTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCAc                                        <  2:80784‑M2/209‑1 (MQ=255)                                                                                                                                                                                                               caatccaggagacggccacgctactgcgtttacccaacGCCATCCATTCGCGTAGCGCAGAAATAATAATTTCACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACCAGCTGTGATAATGCTCGGTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTACTCTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCAccgc                                     >  2:483469‑M2/39‑250 (MQ=255)                                                                                                                                                                                                                    caggagacggccacgctactgcgtttacccaacGCCATCCATTCGCGTAGCGCAGAAATAATAATTTCACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACCAGCTGTGATAATGCTCGGTTACCAGCACCATGGCGATAGCCACGAGCACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTACTCTGGTTCCAGCGGCGTGGCAGAAAACCAATGAACCAGTCAGTCACCACCGCGa                                >  2:508708‑M2/34‑250 (MQ=255)                                                                                                                                                                                                                    caggagacggccacgctactgcgtttacccaacGCCATCCATTCGCGTAGCGCAGAAATAATAATTTCACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACCAGCTGTGATAATGCTCGGTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTACTCTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGa                                >  1:409334‑M2/34‑250 (MQ=255)                                                                                                                                                                                                                                 cgctactgcgtttacccaacGCCATCCATTCGCGTAGCGCAGAAATAATAATTTCACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACCAGCTGTGATAATGCTCGGTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTACTCTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAg                   <  1:536812‑M2/230‑1 (MQ=255)                                                                                                                                                                                                                                   ctactgcgtttacccaacGCCATCCATTCGCGTAGCGCAGAAATAATAATTTCACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACCAGCTGTGATAATGCTCGGTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTACTCTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAgcg                 >  2:808405‑M2/19‑250 (MQ=255)                                                                                                                                                                                                                                        gcgtttacccaacGCCATCCATTCGCGTAGCGCAGAAATAATAATTTCACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACCAGCTGTGATAATGCTCGGTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTACTCTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCgcggcg            >  1:781378‑M2/14‑250 (MQ=255)                                                                                                                                                                                                                                             tacccaacGCCATCCATTCGCGTAGCGCAGAAATAATAATTTCACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACCAGCTGTGATAATGCTCGGTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTACTCTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCaaa       >  1:338835‑M2/9‑250 (MQ=255)                                                                                                                                                                                                                                                 caacGCCATCCATTCGCGTAGCGCAGAAATAATAATTTCACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCCCCAGCTGTGATAATGCTCGGTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTACTCTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGc   <  1:660959‑M2/246‑1 (MQ=255)                                                                                                                                                                                                                                                 caacGCCATCCATTCGCGTAGCGCAGAAATAATAATTTCACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACCAGCTGTGATAATGCTCGGTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTACTCTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGc   <  1:336722‑M2/246‑1 (MQ=255)                                                                                                                                                                                                                                                  aacGCCATCCATTCGCGTAGCGCAGAAATAATAATTTCACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACCAGCTGTGATAATGCTCGGTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTACTCTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCg  >  2:659542‑M2/4‑250 (MQ=255)                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                       TTTGATCGTTTGCTGAAAATTACGCCGAAACGATCACTGATCAAGCAAATCTGCACGCGCAGCGCTCAAATATTGCAACATTGACCACAGAGTCAGTACCGCAGCCACAAAGAAAAGTGCAATACCGGCGTACTCAACCCAAATGTTCGGACGCCACAGCAGCCATGCCAACGCCACCATCTGGGCAGTGGTTTTCACTTTCCCAATCCAGGAGACGGCCACGCTACTGCGTTTACCCAACTCCGCCATCCATTCGCGTAGCGCAGAAATAATAATTTCACGGGCGATCATCGTTGCCGCCGGTAATGTCACCCACCAGCTGTGATAATGCTCGGTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTACTCTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCG  >  NZ_CP009273/1985717‑1986207

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑