mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| MC JC | 708,896 | (AACACC)2→1 | coding (454‑459/546 nt) | seqA → | replication initiation negative regulator SeqA |
| JC | 767,825 | Δ4 bp | coding (912‑915/1569 nt) | cydA → | cytochrome ubiquinol oxidase subunit I |
| RA | 874,860 | G→A | M221I (ATG→ATA) | yliI → | aldose sugar dehydrogenase YliI |
| RA | 1,431,900 | G→A | Q1048* (CAG→TAG) | nifJ ← | pyruvate:ferredoxin (flavodoxin) oxidoreductase |
| MC JC | 1,909,389 | Δ5 bp | coding (399‑403/699 nt) | proQ ← | RNA chaperone ProQ |
| MC JC | 1,985,958 | Δ3 bp | coding (339‑341/549 nt) | pgsA ← | CDP‑diacylglycerol‑‑glycerol‑3‑phosphate 3‑phosphatidyltransferase |
| RA | 3,275,282 | C→A | intergenic (+298/‑53) | BW25113_RS16255 → / → agaS | amidohydrolase family protein/AgaS family sugar isomerase |
| RA | 3,794,560 | C→A | G267V (GGT→GTT) | rfaJ ← | lipopolysaccharide 1,2‑glucosyltransferase RfaJ |
| RA | 3,800,777 | C→A | E240* (GAA→TAA) | rfaQ ← | lipopolysaccharide core heptosyltransferase RfaQ |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 360104 = | 46 (0.500) | 44 (0.480) | 38/496 | 1.8 | 46.6% | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | 55 (0.600) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
| * | ? | NZ_CP009273 | 1203246 = | 12 (0.130) | 57 (0.660) | 53/464 | 0.8 | 87.5% | coding (290/630 nt) | BW25113_RS05990 | protein StfP |
| ? | NZ_CP009273 | 1205075 = | 5 (0.060) | coding (40/540 nt) | BW25113_RS06005 | phage tail protein | |||||
| * | ? | NZ_CP009273 | = 1203261 | 12 (0.130) | 37 (0.430) | 35/464 | 1.8 | 82.0% | coding (305/630 nt) | BW25113_RS05990 | protein StfP |
| ? | NZ_CP009273 | = 1205058 | 5 (0.060) | coding (57/540 nt) | BW25113_RS06005 | phage tail protein | |||||