mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 56,162 | G→T | N316K (AAC→AAA) | lptD ← | LPS assembly protein LptD |
| RA | 103,231 | G→A | C63Y (TGT→TAT) | lpxC → | UDP‑3‑O‑acyl‑N‑acetylglucosamine deacetylase |
| RA | 874,860 | G→A | M221I (ATG→ATA) | yliI → | aldose sugar dehydrogenase YliI |
| RA | 914,598 | +T | intergenic (‑58/‑93) | ybjX ← / → macA | VirK/YbjX family protein/macrolide transporter subunit MacA |
| RA | 1,431,900 | G→A | Q1048* (CAG→TAG) | nifJ ← | pyruvate:ferredoxin (flavodoxin) oxidoreductase |
| RA | 4,322,729 | C→T | E124K (GAA→AAA) | pmrB ← | two‑component system sensor histidine kinase PmrB |
| RA | 4,540,670 | T→A | A148A (GCA→GCT) | gntP ← | gluconate permease GntP |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 360104 = | 48 (0.480) | 68 (0.670) | 54/496 | 2.3 | 57.4% | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | 53 (0.530) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
| * | ? | NZ_CP009273 | = 1391495 | NA (NA) | 87 (0.860) | 78/496 | 0.6 | 97.8% | intergenic (+146/‑127) | BW25113_RS06980/ynaJ | IS5‑like element IS5 family transposase/DUF2534 family protein |
| ? | NZ_CP009273 | = 1796931 | 2 (0.020) | intergenic (‑104/‑420) | thrS/espL1 | threonine‑‑tRNA ligase/type III secretion system effector EspL1 | |||||
| * | ? | NZ_CP009273 | 1796928 = | 0 (0.000) | 93 (0.920) | 80/496 | 0.5 | 100% | intergenic (‑101/‑423) | thrS/espL1 | threonine‑‑tRNA ligase/type III secretion system effector EspL1 |
| ? | NZ_CP009273 | = 2096424 | NA (NA) | intergenic (‑68/+3) | BW25113_RS10605/wbbL | IS5‑like element IS5 family transposase/N‑acetylglucosaminyl‑diphospho‑decaprenol L‑rhamnosyltransferase WbbL | |||||
| * | ? | NZ_CP009273 | = 2283592 | NA (NA) | 142 (1.410) | 111/496 | 0.0 | 57.0% | intergenic (‑68/‑387) | BW25113_RS11435/narP | IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP |
| ? | NZ_CP009273 | = 3179496 | 107 (1.060) | intergenic (+172/‑50) | ygiL/BW25113_RS15805 | fimbrial‑like protein/IS3‑like element IS2 family transposase | |||||
| * | ? | NZ_CP009273 | 3645396 = | NA (NA) | 115 (1.140) | 95/496 | 0.1 | 96.6% | pseudogene (746/747 nt) | BW25113_RS18155 | hypothetical protein |
| ? | NZ_CP009273 | = 3800969 | 4 (0.040) | coding (526/1071 nt) | rfaQ | lipopolysaccharide core heptosyltransferase RfaQ | |||||
| * | ? | NZ_CP009273 | = 3646590 | NA (NA) | 106 (1.050) | 89/496 | 0.2 | 99.1% | pseudogene (3/379 nt) | BW25113_RS18165 | hypothetical protein |
| ? | NZ_CP009273 | 3800966 = | 1 (0.010) | coding (529/1071 nt) | rfaQ | lipopolysaccharide core heptosyltransferase RfaQ | |||||