New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 402412	50 (1.000)	3 (0.060)	3/408	5.2	5.3%	coding (666/1416 nt)	phoA	alkaline phosphatase
	?	NC_000913	= 3565759	58 (1.170)					coding (823/2448 nt)	glgP	glycogen phosphorylase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTGGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATGGCAAAAGCCGCAGGTCTGGCGACCGGTAACGTTTCTACCGCAGAGTTGCAGGATGCCACGCCCGCTGCGCTGGTGGCACATGTGACCTCGCGCAAATGCTACGGTCCGAGCGCGACCAGTGAAAAATGTCCGGGTAACGCTCTGGAAAAAGGCGGAAAAGGATCGATTACCGAACAGCTGCTTAACGCTCGTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/402124‑402412 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccACCTACTCCGGGCGTGAGCTGCGCCTGCGTCAGGAATACTTCCTGGTTTCCTCGACCATTCAGGACATTTTAAGCCGCCATTATCAGTTGCATAAAACCTACGATAACCTGGCGGATAAAATCGCGATTCATCTCAATGATACCCATCCGGTACTGTCGATTCCTGAGATGATGCGTCTGCTGATCGATGAGCACCAATTTAGCTGGGACGACGCGTTTGAGGTGTGTTGTCAGGTCTTCTCCTACACTAACCACACGCTGATGAGCGAGGCGCTGGAAACCTGGCC  <  NC_000913/3565759‑3565473                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ATCACCAACCGCCTGGTCAACCCGTGTCAAAACCTCTAACGGCGCGCTGGGCGTCAATATTCACGAAAAAGATCACCCAACGATTCTGGAAATGGCAAAAGCCGCAGGTCTGGCGACCGGTAACGTTTCTACCGCAGGGTTGCAGGATGCCACGCCCGCTGCGCTGGTGGCACATGTGACCTCGCGCAAATGCTACGGTCCGAGCGCGACCAGTGAAAAATGTCCGGGTAACGCTCTGGAAAAAGGCGGAAAAGGATCGATTACCGAACAGCTGCTTAACGCTCGTGC                                                                                                                                                                                                                                                                                                  <  1:415108/288‑1                                                                                                                                 CTACCGCAGAGTTGCAGGATGCCACGCCCGCTGCGCTGGTGGCACATGTGACCTCGCGCAAATGCTACGGTCCGAGCGCGACCAGTGAAAAATGTCCGGGTAACGCTCTGGAAAAAGGCGGAAAAGGATCGATTACCGAACAGCTGCTTAACGCTCGTGC                                                                                                                                                                                                                                                                                                  >  1:756455/1‑160                                                                                                                                 CTACCGCAGAGTTGCAGGATGCCACGCCCGCTGCGCTGGTGGCACATGTGACCTCGCGCAAATGCTACGGTCCGAGCGCGACCAGTGAAAAATGTCCGGGTAACGCTCTGGAAAAAGGCGGAAAAGGATCGATTACCGAACAGCTGCTTAACGCTCGTGC                                                                                                                                                                                                                                                                                                  <  2:756455/160‑1                                                                                                                                                             CGCTGCGCTGGTGGCACATGTGACCTCGCGCAAATGCTACGGTCCGAGCGCGACCAGTG‑AAAATGTCCGGGTAACGCTCTGGAAAAAGGCGGAAAAGGATCGATTACCGAACAGCTGCTTAACGCTCGTGCCACCTACTCCGGGCGTGAGCTGCGCCTGCGTCAGGAATACTTCCTGGTTTCCTCGACCATTCAGGACATTTTAAGCCGCCATTATCAGTTGCATAAAACCTACGATAACCTGGCGGATAAAATCGCGATTCATCTCAA                                                                                                                                                        <  1:163473/269‑1                                                                                                                                                                      GGTGGCACATGTGACCTCGCGCAAATGCTACGGTCCGAGCGCGACCAGTG‑AAAATGTCCGGGTAACGCTCTGGAAAAAGGCGGAAAAGGATCGATTACCGAACAGCTGCTTAACGCTCGTGCCACCTACTCCGGGCGTGAGCTGCGCCTGCGTCAGGAATACTTCCTGGTTTCCTCGACCATTCAGGCCATTTTAAGCCGCCATTAGCAGTTGCATAAAACCTACGATAACCCGGAGGATAAAACCGCGATTgcatgttca                                                                                                                                                       >  2:163473/1‑252                                                                                                                                                                                                                                                                                               GCCACCTACTCCGGGCGTGGGCTGCGCCTGCGTAAGGAATACTTCCTGGTTTCCTCGACCATTCAGGACATTTTAAGCCGCCATTATCAGTTGCATAAAACCTACGATAACCTGGCGGATAAAATCGCGATTCATCTCAATGATACCCATCCGGTACTGTCGATTCCTGAGATGATGCGTCTGCTGATCGATGAGCACCAAT                                                                                          <  2:205272/202‑1                                                                                                                                                                                                                                                                                                 CACCTACTCCGGGCGTGAGCTGCGCCTGCGTCATGAATACTTCCTGGTTTGCTCGACCAATCAGGACATTTTAAGCCGCCATTATCAGTTGCATAAAACCTACGATAACCTGGCGGATAAAATCGCGATTCATCTCAATGATACCCATCCGGTACTGTCGATTCCTGAGATGATGCGTCTGCTGATCGATGAGCACCAATTTAGCTGGGACGACGCGTTTGAGTTGTGTTGTCAGGTCTTCTCCTACACTAACCACACGCTGATGAGCGAGGCGCTGGAAACCTGGCC  <  1:485218/288‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ATCAGCAACCGCCTGGTCAACCGGTGTCAAAACCTATAACGGCGCGCTGGGCGTCGATATTCACGAAAAAGATCACCCAACGATTCTGGAAATGGCAAAAGCCGCAGGTCTGGCGACCGGTAACGTTTCTACCGCAGAGTTGCAGGATGCCACGCCCGCTGCGCTGGTGGCACATGTGACCTCGCGCAAATGCTACGGTCCGAGCGCGACCAGTGAAAAATGTCCGGGTAACGCTCTGGAAAAAGGCGGAAAAGGATCGATTACCGAACAGCTGCTTAACGCTCGTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/402124‑402412 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccACCTACTCCGGGCGTGAGCTGCGCCTGCGTCAGGAATACTTCCTGGTTTCCTCGACCATTCAGGACATTTTAAGCCGCCATTATCAGTTGCATAAAACCTACGATAACCTGGCGGATAAAATCGCGATTCATCTCAATGATACCCATCCGGTACTGTCGATTCCTGAGATGATGCGTCTGCTGATCGATGAGCACCAATTTAGCTGGGACGACGCGTTTGAGGTGTGTTGTCAGGTCTTCTCCTACACTAACCACACGCTGATGAGCGAGGCGCTGGAAACCTGGCC  <  NC_000913/3565759‑3565473

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.